HEADER DNA BINDING PROTEIN 14-APR-24 9EZZ TITLE BACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR CBF/NF-Y/ARCHAEAL HISTONE DOMAIN- COMPND 3 CONTAINING PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*GP*GP*GP*CP*T)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*AP*GP*CP*CP*C)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS HD100; SOURCE 3 ORGANISM_TAXID: 264462; SOURCE 4 GENE: BD0055; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS BACTERIAL HISTONE, PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HU,R.ALBRECHT,M.D.HARTMANN REVDAT 4 09-OCT-24 9EZZ 1 JRNL REVDAT 3 21-AUG-24 9EZZ 1 JRNL REVDAT 2 03-JUL-24 9EZZ 1 REMARK REVDAT 1 26-JUN-24 9EZZ 0 JRNL AUTH Y.HU,S.SCHWAB,S.DEISS,P.ESCUDEIRO,T.VAN HEESCH,J.D.JOINER, JRNL AUTH 2 J.VREEDE,M.D.HARTMANN,A.N.LUPAS,B.H.ALVAREZ,V.ALVA,R.T.DAME JRNL TITL BACTERIAL HISTONE HBB FROM BDELLOVIBRIO BACTERIOVORUS JRNL TITL 2 COMPACTS DNA BY BENDING. JRNL REF NUCLEIC ACIDS RES. V. 52 8193 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38864377 JRNL DOI 10.1093/NAR/GKAE485 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 645 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 888 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 889 REMARK 3 NUCLEIC ACID ATOMS : 205 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.45000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.273 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1152 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1053 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1594 ; 1.271 ; 1.526 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2429 ; 1.327 ; 1.737 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 129 ; 5.083 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ;37.446 ;24.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 187 ;13.182 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;15.662 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 169 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1137 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 218 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 501 ; 1.007 ; 2.507 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 500 ; 1.003 ; 2.502 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 626 ; 1.710 ; 3.736 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 627 ; 1.709 ; 3.742 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 649 ; 1.143 ; 3.004 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 640 ; 1.096 ; 2.915 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 953 ; 1.787 ; 4.349 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1288 ; 6.651 ;31.000 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1283 ; 6.618 ;30.762 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 1647 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8087 -5.0607 24.9096 REMARK 3 T TENSOR REMARK 3 T11: 0.2838 T22: 0.1217 REMARK 3 T33: 0.0322 T12: -0.0520 REMARK 3 T13: -0.0100 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 5.3536 L22: 2.0661 REMARK 3 L33: 12.2973 L12: 0.9387 REMARK 3 L13: -5.7761 L23: -2.4292 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: 0.4564 S13: -0.0245 REMARK 3 S21: 0.1265 S22: 0.0579 S23: 0.0395 REMARK 3 S31: -0.1986 S32: 0.1450 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7921 -3.5089 23.3433 REMARK 3 T TENSOR REMARK 3 T11: 0.3636 T22: 0.1200 REMARK 3 T33: 0.0109 T12: -0.0440 REMARK 3 T13: -0.0305 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 10.9819 L22: 1.5927 REMARK 3 L33: 4.9708 L12: 1.3197 REMARK 3 L13: -5.4554 L23: -0.7486 REMARK 3 S TENSOR REMARK 3 S11: -0.0685 S12: 0.2361 S13: 0.0120 REMARK 3 S21: -0.0147 S22: 0.0452 S23: 0.0872 REMARK 3 S31: -0.1917 S32: 0.0690 S33: 0.0233 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 6 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9567 -5.9953 -3.3209 REMARK 3 T TENSOR REMARK 3 T11: 0.3797 T22: 0.3535 REMARK 3 T33: 0.3163 T12: 0.0156 REMARK 3 T13: 0.0098 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 7.2908 L22: 2.1389 REMARK 3 L33: 3.4259 L12: 3.6610 REMARK 3 L13: 2.7612 L23: 0.5818 REMARK 3 S TENSOR REMARK 3 S11: -0.3176 S12: -0.0820 S13: 0.1774 REMARK 3 S21: -0.1344 S22: -0.0281 S23: -0.0362 REMARK 3 S31: -0.4550 S32: -0.0304 S33: 0.3456 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5238 -10.7465 2.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.3632 T22: 0.5968 REMARK 3 T33: 0.3122 T12: 0.0026 REMARK 3 T13: -0.0590 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 12.7007 L22: 12.0725 REMARK 3 L33: 11.6468 L12: -11.1452 REMARK 3 L13: -9.3476 L23: 5.0238 REMARK 3 S TENSOR REMARK 3 S11: -1.0592 S12: -0.0539 S13: -0.9415 REMARK 3 S21: 1.1063 S22: -0.0059 S23: 0.3992 REMARK 3 S31: 0.7364 S32: 0.3815 S33: 1.0651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9EZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12919 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 31.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.890 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.33 REMARK 200 R MERGE FOR SHELL (I) : 2.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, 0.2 M LICL AND REMARK 280 20% PEG 6K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.15800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.91350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.11150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.91350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.15800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.11150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 64 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 63 REMARK 465 LEU B 64 REMARK 465 DC C 1 REMARK 465 DT C 7 REMARK 465 DT C 8 REMARK 465 DA C 9 REMARK 465 DA C 10 REMARK 465 DC C 11 REMARK 465 DG C 12 REMARK 465 DG C 13 REMARK 465 DG C 14 REMARK 465 DG C 15 REMARK 465 DC C 16 REMARK 465 DT C 17 REMARK 465 DT C 18 REMARK 465 DT C 19 REMARK 465 DA C 20 REMARK 465 DA C 21 REMARK 465 DT D 1 REMARK 465 DT D 2 REMARK 465 DA D 3 REMARK 465 DA D 4 REMARK 465 DG D 10 REMARK 465 DT D 11 REMARK 465 DT D 12 REMARK 465 DA D 13 REMARK 465 DA D 14 REMARK 465 DA D 15 REMARK 465 DG D 16 REMARK 465 DC D 17 REMARK 465 DC D 18 REMARK 465 DC D 19 REMARK 465 DG D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 13 CE NZ REMARK 470 LYS A 18 CE NZ REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 52 CD CE NZ REMARK 470 LYS B 10 CE NZ REMARK 470 LYS B 12 NZ REMARK 470 LYS B 13 CE NZ REMARK 470 LYS B 16 CE NZ REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 47 CE NZ REMARK 470 LYS B 52 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 P DG C 2 O3' DT C 6 4445 1.59 REMARK 500 P DA D 5 O3' DC D 9 4545 1.59 REMARK 500 OP1 DG C 2 O3' DT C 6 4445 1.96 REMARK 500 O5' DG C 2 O3' DT C 6 4445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8CMP RELATED DB: PDB REMARK 900 PROTEIN WITHOUT DNA DBREF 9EZZ A 1 64 UNP Q6MRM1 Q6MRM1_BDEBA 1 64 DBREF 9EZZ B 1 64 UNP Q6MRM1 Q6MRM1_BDEBA 1 64 DBREF 9EZZ C 1 21 PDB 9EZZ 9EZZ 1 21 DBREF 9EZZ D 1 20 PDB 9EZZ 9EZZ 1 20 SEQADV 9EZZ GLY A -1 UNP Q6MRM1 EXPRESSION TAG SEQADV 9EZZ HIS A 0 UNP Q6MRM1 EXPRESSION TAG SEQADV 9EZZ GLY B -1 UNP Q6MRM1 EXPRESSION TAG SEQADV 9EZZ HIS B 0 UNP Q6MRM1 EXPRESSION TAG SEQRES 1 A 66 GLY HIS MET ALA GLU VAL LEU VAL VAL THR SER LYS VAL SEQRES 2 A 66 LYS LYS LEU ILE LYS GLU LYS GLY GLN MET ASN THR SER SEQRES 3 A 66 ALA GLU THR ILE ASP VAL LEU SER LYS ALA ILE GLU GLN SEQRES 4 A 66 LEU CYS LEU LYS GLY VAL GLU SER ALA LYS ALA ASP GLY SEQRES 5 A 66 ARG LYS THR VAL MET ALA ARG ASP ILE VAL ILE ASP HIS SEQRES 6 A 66 LEU SEQRES 1 B 66 GLY HIS MET ALA GLU VAL LEU VAL VAL THR SER LYS VAL SEQRES 2 B 66 LYS LYS LEU ILE LYS GLU LYS GLY GLN MET ASN THR SER SEQRES 3 B 66 ALA GLU THR ILE ASP VAL LEU SER LYS ALA ILE GLU GLN SEQRES 4 B 66 LEU CYS LEU LYS GLY VAL GLU SER ALA LYS ALA ASP GLY SEQRES 5 B 66 ARG LYS THR VAL MET ALA ARG ASP ILE VAL ILE ASP HIS SEQRES 6 B 66 LEU SEQRES 1 C 21 DC DG DG DG DC DT DT DT DA DA DC DG DG SEQRES 2 C 21 DG DG DC DT DT DT DA DA SEQRES 1 D 20 DT DT DA DA DA DG DC DC DC DG DT DT DA SEQRES 2 D 20 DA DA DG DC DC DC DG HET PO4 A 101 5 HET PO4 B 101 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *40(H2 O) HELIX 1 AA1 VAL A 7 GLN A 20 1 14 HELIX 2 AA2 SER A 24 ASP A 49 1 26 HELIX 3 AA3 MET A 55 ILE A 59 5 5 HELIX 4 AA4 VAL B 7 GLN B 20 1 14 HELIX 5 AA5 SER B 24 ASP B 49 1 26 HELIX 6 AA6 MET B 55 ILE B 59 5 5 SHEET 1 AA1 2 ASN A 22 THR A 23 0 SHEET 2 AA1 2 THR B 53 VAL B 54 1 O VAL B 54 N ASN A 22 SHEET 1 AA2 2 THR A 53 VAL A 54 0 SHEET 2 AA2 2 ASN B 22 THR B 23 1 O ASN B 22 N VAL A 54 CRYST1 32.316 34.223 151.827 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.029220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006586 0.00000