HEADER VIRUS LIKE PARTICLE 25-APR-24 9F3Q TITLE POLIOVIRUS TYPE 1 (STRAIN MAHONEY) STABILISED VIRUS-LIKE PARTICLE (PV1 TITLE 2 SC6B) IN COMPLEX WITH GPP3 AND GSH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P1D,VIRION PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAPSID PROTEIN VP0; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: VP4-VP2; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: CAPSID PROTEIN VP3; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: P1C,VIRION PROTEIN 3; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1 MAHONEY; SOURCE 3 ORGANISM_TAXID: 12081; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1 MAHONEY; SOURCE 8 ORGANISM_TAXID: 12081; SOURCE 9 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1 MAHONEY; SOURCE 13 ORGANISM_TAXID: 12081; SOURCE 14 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS CAPSID PROTEIN, VIRUS-LIKE PARTICLE, INHIBITOR, COMPLEX, VACCINE, KEYWDS 2 VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR M.W.BAHAR,V.NASTA,L.SHERRY,N.J.STONEHOUSE,D.J.ROWLANDS,E.E.FRY, AUTHOR 2 D.I.STUART REVDAT 1 29-JAN-25 9F3Q 0 JRNL AUTH L.SHERRY,M.W.BAHAR,C.PORTA,H.FOX,K.GREHAN,V.NASTA, JRNL AUTH 2 H.M.E.DUYVESTEYN,L.DE COLIBUS,J.MARSIAN,I.MURDOCH, JRNL AUTH 3 D.PONNDORF,S.R.KIM,S.SHAH,S.CARLYLE,J.J.SWANSON,S.MATTHEWS, JRNL AUTH 4 C.NICOL,G.P.LOMONOSSOFF,A.J.MACADAM,E.E.FRY,D.I.STUART, JRNL AUTH 5 N.J.STONEHOUSE,D.J.ROWLANDS JRNL TITL RECOMBINANT EXPRESSION SYSTEMS FOR PRODUCTION OF STABILISED JRNL TITL 2 VIRUS-LIKE PARTICLES AS NEXT-GENERATION POLIO VACCINES. JRNL REF NAT COMMUN V. 16 831 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 39827284 JRNL DOI 10.1038/S41467-025-56118-Z REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, UCSF CHIMERA, REMARK 3 COOT, CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1HXS REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL MODEL WAS RIGID BODY FITTED USING UCSF REMARK 3 CHIMERA AND COOT. GLOBAL MINIMIZATION AND B-FACTOR REFINEMENT REMARK 3 WAS PERFORMED IN REAL SPACE USING PHENIX_REAL.SPACE.REFINE. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.750 REMARK 3 NUMBER OF PARTICLES : 23721 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: ICOSAHEDRAL SYMMETRY APPLIED TO FINAL REMARK 3 RECONSTRUCTION. FINAL MAPS WERE POST-PROCESSED WITH AN INVERSE B- REMARK 3 FACTOR OF -146.7 ANGSTROM SQUARED. REMARK 4 REMARK 4 9F3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292137833. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN POLIOVIRUS 1 MAHONEY REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : THE EXACT GRID TYPE USED WAS REMARK 245 ULTRA-THIN CARBON SUPPORT FILM, REMARK 245 3NM - ON LACEY CARBON (PRODUCT REMARK 245 AGS187-4, AGAR SCIENTIFIC). REMARK 245 SAMPLE VITRIFICATION DETAILS : 3-4 UL OF SAMPLE BLOTTED FOR REMARK 245 3.5 SECONDS WITH -15 BLOT FORCE REMARK 245 ON FEI VITROBOT MARK IV. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : RECOMBINANTLY EXPRESSED VIRUS REMARK 245 -LIKE PARTICLE OF POLIOVIRUS TYPE 1 (MAHONEY STRAIN). REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4467 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2900.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : DARK FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3549.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : 129629 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : CALIBRATED PIXEL SIZE WAS REMARK 245 1.08 A/PIX. REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 180-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 483.84000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 483.84000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 483.84000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 483.84000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 483.84000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 241.92000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 633.35478 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 92.40522 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 241.92000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 633.35478 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 391.43478 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 633.35478 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 391.43478 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 241.92000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 391.43478 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 241.92000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 633.35478 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 633.35478 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 391.43478 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 241.92000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 241.92000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 633.35478 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 92.40522 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 391.43478 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 241.92000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -149.51478 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 483.84000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 483.84000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 633.35478 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 92.40522 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 241.92000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 483.84000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 483.84000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 483.84000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 633.35478 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 92.40522 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 241.92000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 391.43478 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 241.92000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -149.51478 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 241.92000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -149.51478 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 92.40522 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 483.84000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 483.84000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 483.84000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 633.35478 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 391.43478 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 241.92000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 483.84000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 483.84000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 241.92000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -149.51478 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 92.40522 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 483.84000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 241.92000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -149.51478 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 391.43478 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 391.43478 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 241.92000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 633.35478 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 633.35478 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 92.40522 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 241.92000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 391.43478 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 241.92000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 633.35478 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 483.84000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 483.84000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 483.84000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 92.40522 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 241.92000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 633.35478 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 483.84000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 483.84000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 483.84000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 483.84000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 483.84000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 483.84000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 483.84000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 483.84000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 241.92000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 633.35478 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 391.43478 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 241.92000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 633.35478 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 92.40522 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -149.51478 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 391.43478 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 241.92000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 92.40522 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 241.92000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -149.51478 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -149.51478 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 391.43478 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 241.92000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 241.92000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 633.35478 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 391.43478 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 92.40522 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 241.92000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 633.35478 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 483.84000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 483.84000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -149.51478 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 92.40522 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 241.92000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 483.84000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -149.51478 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 92.40522 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 241.92000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 92.40522 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 241.92000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 633.35478 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 241.92000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -149.51478 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 391.43478 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 483.84000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -149.51478 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 391.43478 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 241.92000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 241.92000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -149.51478 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 391.43478 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 483.84000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 241.92000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -149.51478 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 92.40522 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 92.40522 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 241.92000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -149.51478 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -149.51478 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 92.40522 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 241.92000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 92.40522 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 241.92000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -149.51478 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 483.84000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 483.84000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 483.84000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 391.43478 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 241.92000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -149.51478 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 483.84000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 MET A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 MET A 9 REMARK 465 ILE A 10 REMARK 465 ASP A 11 REMARK 465 ASN A 12 REMARK 465 THR A 13 REMARK 465 VAL A 14 REMARK 465 ARG A 15 REMARK 465 GLU A 16 REMARK 465 THR A 17 REMARK 465 VAL A 18 REMARK 465 GLY A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 MET B 1 REMARK 465 LYS B 9 REMARK 465 VAL B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 HIS B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 SER B 16 REMARK 465 ASN B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 TYR B 20 REMARK 465 GLY B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 THR B 24 REMARK 465 ILE B 25 REMARK 465 SER B 42 REMARK 465 LYS B 43 REMARK 465 GLN B 44 REMARK 465 ASP B 45 REMARK 465 PHE B 46 REMARK 465 SER B 47 REMARK 465 GLN B 48 REMARK 465 ASP B 49 REMARK 465 PRO B 50 REMARK 465 SER B 51 REMARK 465 LYS B 52 REMARK 465 PHE B 53 REMARK 465 THR B 54 REMARK 465 GLU B 55 REMARK 465 PRO B 56 REMARK 465 ILE B 57 REMARK 465 LYS B 58 REMARK 465 ASP B 59 REMARK 465 VAL B 60 REMARK 465 LEU B 61 REMARK 465 ILE B 62 REMARK 465 LYS B 63 REMARK 465 THR B 64 REMARK 465 ALA B 65 REMARK 465 PRO B 66 REMARK 465 MET B 67 REMARK 465 LEU B 68 REMARK 465 ASN B 69 REMARK 465 SER B 70 REMARK 465 PRO B 71 REMARK 465 ASN B 72 REMARK 465 ILE B 73 REMARK 465 GLU B 74 REMARK 465 ALA B 75 REMARK 465 CYS B 76 REMARK 465 GLY B 77 REMARK 465 TYR B 78 REMARK 465 GLN C 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 82 53.25 -91.42 REMARK 500 THR A 98 32.01 -97.03 REMARK 500 ASN A 147 1.92 -67.90 REMARK 500 CYS A 270 75.12 62.64 REMARK 500 ALA B 98 40.36 -108.33 REMARK 500 ASN B 99 -157.16 72.38 REMARK 500 GLU B 115 19.11 -141.48 REMARK 500 GLU B 126 -121.68 65.72 REMARK 500 THR B 141 -169.77 -126.23 REMARK 500 GLU B 198 61.65 60.94 REMARK 500 LEU B 250 15.65 59.18 REMARK 500 ALA B 309 -110.75 37.14 REMARK 500 LEU C 57 51.25 -93.06 REMARK 500 ASP C 74 34.45 -99.36 REMARK 500 LEU C 224 65.60 64.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50176 RELATED DB: EMDB REMARK 900 POLIOVIRUS TYPE 1 (STRAIN MAHONEY) STABILISED VIRUS-LIKE PARTICLE REMARK 900 (PV1 SC6B) IN COMPLEX WITH GPP3 AND GSH. DBREF 9F3Q A 1 302 UNP P03300 POLG_POL1M 580 881 DBREF 9F3Q B 2 341 UNP P03300 POLG_POL1M 2 341 DBREF 9F3Q C 1 238 UNP P03300 POLG_POL1M 342 579 SEQADV 9F3Q PRO A 248 UNP P03300 HIS 827 ENGINEERED MUTATION SEQADV 9F3Q MET B 1 UNP P03300 INITIATING METHIONINE SEQADV 9F3Q GLY B 18 UNP P03300 ARG 18 ENGINEERED MUTATION SEQADV 9F3Q ALA B 94 UNP P03300 THR 94 ENGINEERED MUTATION SEQADV 9F3Q GLU B 126 UNP P03300 ASP 126 ENGINEERED MUTATION SEQADV 9F3Q MET C 119 UNP P03300 LEU 460 ENGINEERED MUTATION SEQADV 9F3Q SER C 123 UNP P03300 PHE 464 VARIANT SEQADV 9F3Q LEU C 178 UNP P03300 GLN 519 ENGINEERED MUTATION SEQRES 1 A 302 GLY LEU GLY GLN MET LEU GLU SER MET ILE ASP ASN THR SEQRES 2 A 302 VAL ARG GLU THR VAL GLY ALA ALA THR SER ARG ASP ALA SEQRES 3 A 302 LEU PRO ASN THR GLU ALA SER GLY PRO THR HIS SER LYS SEQRES 4 A 302 GLU ILE PRO ALA LEU THR ALA VAL GLU THR GLY ALA THR SEQRES 5 A 302 ASN PRO LEU VAL PRO SER ASP THR VAL GLN THR ARG HIS SEQRES 6 A 302 VAL VAL GLN HIS ARG SER ARG SER GLU SER SER ILE GLU SEQRES 7 A 302 SER PHE PHE ALA ARG GLY ALA CYS VAL THR ILE MET THR SEQRES 8 A 302 VAL ASP ASN PRO ALA SER THR THR ASN LYS ASP LYS LEU SEQRES 9 A 302 PHE ALA VAL TRP LYS ILE THR TYR LYS ASP THR VAL GLN SEQRES 10 A 302 LEU ARG ARG LYS LEU GLU PHE PHE THR TYR SER ARG PHE SEQRES 11 A 302 ASP MET GLU LEU THR PHE VAL VAL THR ALA ASN PHE THR SEQRES 12 A 302 GLU THR ASN ASN GLY HIS ALA LEU ASN GLN VAL TYR GLN SEQRES 13 A 302 ILE MET TYR VAL PRO PRO GLY ALA PRO VAL PRO GLU LYS SEQRES 14 A 302 TRP ASP ASP TYR THR TRP GLN THR SER SER ASN PRO SER SEQRES 15 A 302 ILE PHE TYR THR TYR GLY THR ALA PRO ALA ARG ILE SER SEQRES 16 A 302 VAL PRO TYR VAL GLY ILE SER ASN ALA TYR SER HIS PHE SEQRES 17 A 302 TYR ASP GLY PHE SER LYS VAL PRO LEU LYS ASP GLN SER SEQRES 18 A 302 ALA ALA LEU GLY ASP SER LEU TYR GLY ALA ALA SER LEU SEQRES 19 A 302 ASN ASP PHE GLY ILE LEU ALA VAL ARG VAL VAL ASN ASP SEQRES 20 A 302 PRO ASN PRO THR LYS VAL THR SER LYS ILE ARG VAL TYR SEQRES 21 A 302 LEU LYS PRO LYS HIS ILE ARG VAL TRP CYS PRO ARG PRO SEQRES 22 A 302 PRO ARG ALA VAL ALA TYR TYR GLY PRO GLY VAL ASP TYR SEQRES 23 A 302 LYS ASP GLY THR LEU THR PRO LEU SER THR LYS ASP LEU SEQRES 24 A 302 THR THR TYR SEQRES 1 B 341 MET GLY ALA GLN VAL SER SER GLN LYS VAL GLY ALA HIS SEQRES 2 B 341 GLU ASN SER ASN GLY ALA TYR GLY GLY SER THR ILE ASN SEQRES 3 B 341 TYR THR THR ILE ASN TYR TYR ARG ASP SER ALA SER ASN SEQRES 4 B 341 ALA ALA SER LYS GLN ASP PHE SER GLN ASP PRO SER LYS SEQRES 5 B 341 PHE THR GLU PRO ILE LYS ASP VAL LEU ILE LYS THR ALA SEQRES 6 B 341 PRO MET LEU ASN SER PRO ASN ILE GLU ALA CYS GLY TYR SEQRES 7 B 341 SER ASP ARG VAL LEU GLN LEU THR LEU GLY ASN SER THR SEQRES 8 B 341 ILE THR ALA GLN GLU ALA ALA ASN SER VAL VAL ALA TYR SEQRES 9 B 341 GLY ARG TRP PRO GLU TYR LEU ARG ASP SER GLU ALA ASN SEQRES 10 B 341 PRO VAL ASP GLN PRO THR GLU PRO GLU VAL ALA ALA CYS SEQRES 11 B 341 ARG PHE TYR THR LEU ASP THR VAL SER TRP THR LYS GLU SEQRES 12 B 341 SER ARG GLY TRP TRP TRP LYS LEU PRO ASP ALA LEU ARG SEQRES 13 B 341 ASP MET GLY LEU PHE GLY GLN ASN MET TYR TYR HIS TYR SEQRES 14 B 341 LEU GLY ARG SER GLY TYR THR VAL HIS VAL GLN CYS ASN SEQRES 15 B 341 ALA SER LYS PHE HIS GLN GLY ALA LEU GLY VAL PHE ALA SEQRES 16 B 341 VAL PRO GLU MET CYS LEU ALA GLY ASP SER ASN THR THR SEQRES 17 B 341 THR MET HIS THR SER TYR GLN ASN ALA ASN PRO GLY GLU SEQRES 18 B 341 LYS GLY GLY THR PHE THR GLY THR PHE THR PRO ASP ASN SEQRES 19 B 341 ASN GLN THR SER PRO ALA ARG ARG PHE CYS PRO VAL ASP SEQRES 20 B 341 TYR LEU LEU GLY ASN GLY THR LEU LEU GLY ASN ALA PHE SEQRES 21 B 341 VAL PHE PRO HIS GLN ILE ILE ASN LEU ARG THR ASN ASN SEQRES 22 B 341 CYS ALA THR LEU VAL LEU PRO TYR VAL ASN SER LEU SER SEQRES 23 B 341 ILE ASP SER MET VAL LYS HIS ASN ASN TRP GLY ILE ALA SEQRES 24 B 341 ILE LEU PRO LEU ALA PRO LEU ASN PHE ALA SER GLU SER SEQRES 25 B 341 SER PRO GLU ILE PRO ILE THR LEU THR ILE ALA PRO MET SEQRES 26 B 341 CYS CYS GLU PHE ASN GLY LEU ARG ASN ILE THR LEU PRO SEQRES 27 B 341 ARG LEU GLN SEQRES 1 C 238 GLY LEU PRO VAL MET ASN THR PRO GLY SER ASN GLN TYR SEQRES 2 C 238 LEU THR ALA ASP ASN PHE GLN SER PRO CYS ALA LEU PRO SEQRES 3 C 238 GLU PHE ASP VAL THR PRO PRO ILE ASP ILE PRO GLY GLU SEQRES 4 C 238 VAL LYS ASN MET MET GLU LEU ALA GLU ILE ASP THR MET SEQRES 5 C 238 ILE PRO PHE ASP LEU SER ALA THR LYS LYS ASN THR MET SEQRES 6 C 238 GLU MET TYR ARG VAL ARG LEU SER ASP LYS PRO HIS THR SEQRES 7 C 238 ASP ASP PRO ILE LEU CYS LEU SER LEU SER PRO ALA SER SEQRES 8 C 238 ASP PRO ARG LEU SER HIS THR MET LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR THR HIS TRP ALA GLY SER LEU LYS PHE THR SEQRES 10 C 238 PHE MET PHE CYS GLY SER MET MET ALA THR GLY LYS LEU SEQRES 11 C 238 LEU VAL SER TYR ALA PRO PRO GLY ALA ASP PRO PRO LYS SEQRES 12 C 238 LYS ARG LYS GLU ALA MET LEU GLY THR HIS VAL ILE TRP SEQRES 13 C 238 ASP ILE GLY LEU GLN SER SER CYS THR MET VAL VAL PRO SEQRES 14 C 238 TRP ILE SER ASN THR THR TYR ARG LEU THR ILE ASP ASP SEQRES 15 C 238 SER PHE THR GLU GLY GLY TYR ILE SER VAL PHE TYR GLN SEQRES 16 C 238 THR ARG ILE VAL VAL PRO LEU SER THR PRO ARG GLU MET SEQRES 17 C 238 ASP ILE LEU GLY PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU ARG ASP THR THR HIS ILE GLU GLN LYS SEQRES 19 C 238 ALA LEU ALA GLN HET YM2 A 401 30 HET GSH A 402 20 HETNAM YM2 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL- HETNAM 2 YM2 PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE HETNAM GSH GLUTATHIONE FORMUL 4 YM2 C23 H30 N4 O3 FORMUL 5 GSH C10 H17 N3 O6 S HELIX 1 AA1 ALA A 46 GLY A 50 5 5 HELIX 2 AA2 VAL A 56 THR A 60 5 5 HELIX 3 AA3 ARG A 72 SER A 75 5 4 HELIX 4 AA4 SER A 76 PHE A 81 1 6 HELIX 5 AA5 VAL A 116 GLU A 123 1 8 HELIX 6 AA6 ASP A 172 THR A 177 5 6 HELIX 7 AA7 ALA A 232 ASP A 236 5 5 HELIX 8 AA8 ASP B 35 ASN B 39 5 5 HELIX 9 AA9 TYR B 104 ARG B 106 5 3 HELIX 10 AB1 ARG B 112 ALA B 116 5 5 HELIX 11 AB2 PRO B 125 ALA B 129 5 5 HELIX 12 AB3 PRO B 152 ARG B 156 5 5 HELIX 13 AB4 MET B 158 TYR B 167 1 10 HELIX 14 AB5 LEU B 255 PHE B 262 5 8 HELIX 15 AB6 MET C 43 GLU C 48 1 6 HELIX 16 AB7 MET C 65 ARG C 69 5 5 HELIX 17 AB8 THR C 98 ASN C 105 1 8 HELIX 18 AB9 LYS C 144 MET C 149 1 6 SHEET 1 AA1 4 ALA A 85 ASN A 94 0 SHEET 2 AA1 4 VAL A 253 PRO A 271 -1 O LEU A 261 N ALA A 85 SHEET 3 AA1 4 PHE A 125 PHE A 142 -1 N VAL A 137 O ARG A 258 SHEET 4 AA1 4 TYR A 205 SER A 206 -1 O TYR A 205 N SER A 128 SHEET 1 AA2 4 ALA A 192 VAL A 196 0 SHEET 2 AA2 4 PHE A 125 PHE A 142 -1 N MET A 132 O VAL A 196 SHEET 3 AA2 4 VAL A 253 PRO A 271 -1 O ARG A 258 N VAL A 137 SHEET 4 AA2 4 GLU C 39 VAL C 40 -1 O VAL C 40 N VAL A 268 SHEET 1 AA3 4 ALA A 106 LYS A 109 0 SHEET 2 AA3 4 ILE A 239 VAL A 244 -1 O VAL A 242 N ALA A 106 SHEET 3 AA3 4 VAL A 154 VAL A 160 -1 N MET A 158 O ALA A 241 SHEET 4 AA3 4 SER A 182 THR A 186 -1 O TYR A 185 N TYR A 155 SHEET 1 AA4 2 GLN B 4 SER B 6 0 SHEET 2 AA4 2 TYR B 27 THR B 29 -1 O THR B 29 N GLN B 4 SHEET 1 AA5 2 LEU B 83 LEU B 87 0 SHEET 2 AA5 2 SER B 90 ALA B 94 -1 O SER B 90 N LEU B 87 SHEET 1 AA6 5 VAL B 101 VAL B 102 0 SHEET 2 AA6 5 CYS B 274 LEU B 279 1 O VAL B 278 N VAL B 101 SHEET 3 AA6 5 HIS B 168 GLN B 180 -1 N VAL B 177 O LEU B 277 SHEET 4 AA6 5 ILE B 316 LEU B 332 -1 O MET B 325 N GLY B 174 SHEET 5 AA6 5 TYR B 133 TRP B 140 -1 N TRP B 140 O ILE B 316 SHEET 1 AA7 5 GLY B 224 THR B 225 0 SHEET 2 AA7 5 TRP B 147 LEU B 151 -1 N TRP B 148 O GLY B 224 SHEET 3 AA7 5 TRP B 296 PHE B 308 -1 O TRP B 296 N LEU B 151 SHEET 4 AA7 5 HIS B 187 PRO B 197 -1 N GLY B 192 O LEU B 301 SHEET 5 AA7 5 HIS B 264 ASN B 268 -1 O GLN B 265 N VAL B 193 SHEET 1 AA8 3 THR C 51 MET C 52 0 SHEET 2 AA8 3 GLU C 207 ALA C 216 -1 O VAL C 214 N THR C 51 SHEET 3 AA8 3 VAL C 70 SER C 73 -1 N LEU C 72 O MET C 208 SHEET 1 AA9 4 THR C 51 MET C 52 0 SHEET 2 AA9 4 GLU C 207 ALA C 216 -1 O VAL C 214 N THR C 51 SHEET 3 AA9 4 LEU C 114 PHE C 120 -1 N MET C 119 O LEU C 211 SHEET 4 AA9 4 SER C 163 VAL C 168 -1 O MET C 166 N PHE C 116 SHEET 1 AB1 4 LEU C 83 SER C 86 0 SHEET 2 AB1 4 TYR C 189 TYR C 194 -1 O ILE C 190 N LEU C 85 SHEET 3 AB1 4 LYS C 129 ALA C 135 -1 N SER C 133 O SER C 191 SHEET 4 AB1 4 THR C 152 ASP C 157 -1 O THR C 152 N TYR C 134 SHEET 1 AB2 3 ARG C 177 LEU C 178 0 SHEET 2 AB2 3 HIS C 109 ALA C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB2 3 SER C 221 ARG C 223 -1 O SER C 221 N ALA C 111 CISPEP 1 LEU B 151 PRO B 152 0 8.59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000