HEADER MEMBRANE PROTEIN 26-APR-24 9F41 TITLE CRYSTAL STRUCTURE OF THE NTD DOMAIN FROM S. CEREVISIA NIEMANN-PICK TITLE 2 TYPE C PROTEIN NCR1 WITH CHOLESTEROL BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: NPC INTRACELLULAR STEROL TRANSPORTER 1-RELATED PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NIEMANN-PICK TYPE C-RELATED PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NCR1, YPL006W; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS CHOLESTEROL, VACUOLE, NCR1, MEMBRANE PROTEIN, NIEMANN-PICK TYPE C KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.NEL,E.OLESEN,K.M.FRAIN,B.P.PEDERSEN REVDAT 1 29-MAY-24 9F41 0 JRNL AUTH D.JAMECNA,K.THAYSEN,L.NEL,E.OLESEN,M.SZOMEK,K.M.FRAIN, JRNL AUTH 2 J.LANGER,B.P.PEDERSEN,D.WUSTNER,D.HOGLINGER JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF LIGAND BINDING IN JRNL TITL 2 YEAST NIEMANN-PICK TYPE C 1-RELATED PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 45257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1400 - 6.5100 0.97 3020 142 0.2188 0.2464 REMARK 3 2 6.5100 - 5.1700 1.00 2982 144 0.2070 0.2472 REMARK 3 3 5.1700 - 4.5100 1.00 2938 141 0.1775 0.2257 REMARK 3 4 4.5100 - 4.1000 1.00 2910 141 0.1792 0.1879 REMARK 3 5 4.1000 - 3.8100 1.00 2906 140 0.1833 0.2082 REMARK 3 6 3.8100 - 3.5800 1.00 2903 141 0.2174 0.2609 REMARK 3 7 3.5800 - 3.4000 1.00 2867 138 0.2526 0.2849 REMARK 3 8 3.4000 - 3.2600 1.00 2903 141 0.2513 0.2646 REMARK 3 9 3.2600 - 3.1300 1.00 2889 139 0.2618 0.3548 REMARK 3 10 3.1300 - 3.0200 1.00 2887 140 0.2909 0.3482 REMARK 3 11 3.0200 - 2.9300 1.00 2872 139 0.3198 0.3376 REMARK 3 12 2.9300 - 2.8400 1.00 2873 139 0.3509 0.4042 REMARK 3 13 2.8400 - 2.7700 1.00 2833 137 0.3374 0.3971 REMARK 3 14 2.7700 - 2.7000 1.00 2860 138 0.3573 0.3930 REMARK 3 15 2.7000 - 2.6400 0.88 2532 122 0.3898 0.3807 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.444 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8087 REMARK 3 ANGLE : 0.618 10948 REMARK 3 CHIRALITY : 0.045 1363 REMARK 3 PLANARITY : 0.003 1296 REMARK 3 DIHEDRAL : 12.281 3286 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 103.3445 136.8047 21.4415 REMARK 3 T TENSOR REMARK 3 T11: 0.6612 T22: 0.4138 REMARK 3 T33: 0.4752 T12: 0.0395 REMARK 3 T13: 0.0008 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 1.4253 L22: 0.2725 REMARK 3 L33: 0.3317 L12: 0.2259 REMARK 3 L13: -0.0596 L23: 0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.2165 S13: 0.3405 REMARK 3 S21: -0.0765 S22: 0.0043 S23: 0.0129 REMARK 3 S31: -0.1209 S32: 0.0007 S33: -0.0183 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 20 through 241 or REMARK 3 resid 300 through 404 or resid 406 or REMARK 3 resid 409 through 414)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 20 through 241 or REMARK 3 resid 300 through 404 or resid 406 or REMARK 3 resid 409 through 414)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 20 through 241 or REMARK 3 resid 300 through 404 or resid 406 or REMARK 3 resid 409 through 414)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 20 through 404 or REMARK 3 resid 406 or resid 409 through 413 or REMARK 3 resid 414)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9F41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292135846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS APP V3.19 REMARK 200 DATA SCALING SOFTWARE : XDS APP V3.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45563 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 47.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.95800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M ZNSO4, 42% PEG 200, 0.1 M MES REMARK 280 PH 6 AND 3% V/V 2-METHYL-2,4-PENTANEDIOL (MPD), PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.01500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.68000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, M, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, N, O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 427 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 443 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 412 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 TRP A 5 REMARK 465 ILE A 6 REMARK 465 ILE A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 LEU A 13 REMARK 465 MET A 14 REMARK 465 ARG A 15 REMARK 465 LEU A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 242 REMARK 465 LYS A 243 REMARK 465 PRO A 244 REMARK 465 LEU A 245 REMARK 465 VAL A 246 REMARK 465 PRO A 247 REMARK 465 ARG A 248 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ILE B 6 REMARK 465 ILE B 7 REMARK 465 ALA B 8 REMARK 465 LEU B 9 REMARK 465 VAL B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 LEU B 13 REMARK 465 MET B 14 REMARK 465 ARG B 15 REMARK 465 LEU B 16 REMARK 465 VAL B 17 REMARK 465 GLN B 18 REMARK 465 GLY B 19 REMARK 465 LEU B 242 REMARK 465 LYS B 243 REMARK 465 PRO B 244 REMARK 465 LEU B 245 REMARK 465 VAL B 246 REMARK 465 PRO B 247 REMARK 465 ARG B 248 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 VAL C 3 REMARK 465 LEU C 4 REMARK 465 TRP C 5 REMARK 465 ILE C 6 REMARK 465 ILE C 7 REMARK 465 ALA C 8 REMARK 465 LEU C 9 REMARK 465 VAL C 10 REMARK 465 GLY C 11 REMARK 465 GLN C 12 REMARK 465 LEU C 13 REMARK 465 MET C 14 REMARK 465 ARG C 15 REMARK 465 LEU C 16 REMARK 465 VAL C 17 REMARK 465 GLN C 18 REMARK 465 GLY C 19 REMARK 465 LEU C 242 REMARK 465 LYS C 243 REMARK 465 PRO C 244 REMARK 465 LEU C 245 REMARK 465 VAL C 246 REMARK 465 PRO C 247 REMARK 465 ARG C 248 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 VAL D 3 REMARK 465 LEU D 4 REMARK 465 TRP D 5 REMARK 465 ILE D 6 REMARK 465 ILE D 7 REMARK 465 ALA D 8 REMARK 465 LEU D 9 REMARK 465 VAL D 10 REMARK 465 GLY D 11 REMARK 465 GLN D 12 REMARK 465 LEU D 13 REMARK 465 MET D 14 REMARK 465 ARG D 15 REMARK 465 LEU D 16 REMARK 465 VAL D 17 REMARK 465 GLN D 18 REMARK 465 GLY D 19 REMARK 465 LEU D 242 REMARK 465 LYS D 243 REMARK 465 PRO D 244 REMARK 465 LEU D 245 REMARK 465 VAL D 246 REMARK 465 PRO D 247 REMARK 465 ARG D 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU A 237 O3 MAN G 6 3475 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 163 -58.63 71.75 REMARK 500 ALA B 21 92.37 -166.17 REMARK 500 PHE B 35 -13.44 66.60 REMARK 500 SER B 146 -49.94 65.66 REMARK 500 THR B 164 -160.08 -105.81 REMARK 500 PHE C 35 -13.62 64.86 REMARK 500 SER C 146 -51.19 71.18 REMARK 500 ASN C 165 36.01 32.83 REMARK 500 ALA D 21 150.61 67.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 445 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 448 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 449 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 450 DISTANCE = 9.88 ANGSTROMS REMARK 525 HOH A 451 DISTANCE = 11.62 ANGSTROMS REMARK 525 HOH A 452 DISTANCE = 12.41 ANGSTROMS REMARK 525 HOH A 454 DISTANCE = 16.40 ANGSTROMS REMARK 525 HOH B 443 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 444 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 451 DISTANCE = 11.49 ANGSTROMS REMARK 525 HOH C 447 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH C 448 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH D 432 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH D 433 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH D 435 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH D 436 DISTANCE = 12.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38 OE2 REMARK 620 2 ASP A 79 OD2 119.7 REMARK 620 3 SO4 A 308 O1 106.1 102.1 REMARK 620 4 GLU C 55 OE1 65.2 170.0 83.9 REMARK 620 5 GLU C 55 OE2 62.1 169.5 86.7 3.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 55 OE1 REMARK 620 2 GLU A 55 OE2 62.8 REMARK 620 3 GLU C 38 OE1 99.2 104.1 REMARK 620 4 GLU C 38 OE2 98.8 102.8 1.3 REMARK 620 5 ASP C 79 OD2 99.5 104.4 0.4 1.6 REMARK 620 6 SO4 C 304 O1 97.6 104.8 2.2 3.0 2.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE1 REMARK 620 2 GLU A 67 OE2 48.8 REMARK 620 3 ASN A 107 OD1 85.0 132.9 REMARK 620 4 HIS A 111 NE2 110.2 99.4 105.6 REMARK 620 5 ASP A 218 OD2 155.2 117.9 100.7 91.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 313 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 151 OE2 REMARK 620 2 HOH A 405 O 64.0 REMARK 620 3 ASP C 154 OD1 62.3 2.7 REMARK 620 4 ASP C 154 OD2 60.7 3.9 1.6 REMARK 620 5 GLU C 237 OE2 64.2 1.6 2.0 3.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 210 OE1 REMARK 620 2 GLU A 212 OE2 115.8 REMARK 620 3 GLU B 210 OE1 112.8 108.4 REMARK 620 4 GLU B 212 OE2 98.2 95.5 125.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 312 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 224 OD2 REMARK 620 2 GLU A 237 OE1 97.5 REMARK 620 3 ASP C 224 OD1 115.6 42.2 REMARK 620 4 ASP C 224 OD2 117.2 41.3 2.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 311 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 237 OE2 REMARK 620 2 GLU C 151 OE1 135.2 REMARK 620 3 GLU C 151 OE2 137.3 2.2 REMARK 620 4 ASP C 154 OD2 134.3 4.2 4.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 38 OE1 REMARK 620 2 GLU B 38 OE2 55.5 REMARK 620 3 GLU B 55 OE1 170.4 115.3 REMARK 620 4 GLU B 55 OE2 160.9 107.6 10.0 REMARK 620 5 ASP B 79 OD2 162.9 108.6 7.7 2.9 REMARK 620 6 SO4 B 307 O2 88.3 103.7 97.2 105.8 102.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 67 OE2 REMARK 620 2 ASN B 107 OD1 110.6 REMARK 620 3 HIS B 111 NE2 109.0 117.8 REMARK 620 4 ASP B 218 OD2 119.3 103.0 97.0 REMARK 620 5 HOH B 401 O 50.8 151.6 90.2 76.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 151 OE2 REMARK 620 2 ASP B 154 OD2 89.8 REMARK 620 3 GLU D 237 OE2 87.8 110.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 154 OD1 REMARK 620 2 ASP B 154 OD2 52.0 REMARK 620 3 GLU B 237 OE2 139.9 91.4 REMARK 620 4 GLU D 151 OE2 139.6 87.9 13.2 REMARK 620 5 HOH D 402 O 68.5 82.6 93.8 106.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 224 OD1 REMARK 620 2 ASP B 224 OD2 55.8 REMARK 620 3 ASP D 224 OD2 91.8 55.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 67 OE2 REMARK 620 2 ASN C 107 OD1 121.8 REMARK 620 3 HIS C 111 NE2 100.0 124.9 REMARK 620 4 ASP C 218 OD2 104.1 111.3 88.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 210 OE2 REMARK 620 2 GLU C 212 OE2 109.3 REMARK 620 3 GLU D 210 OE1 102.4 101.9 REMARK 620 4 GLU D 212 OE2 113.8 101.1 126.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 38 OE2 REMARK 620 2 GLU D 55 OE1 125.0 REMARK 620 3 GLU D 55 OE2 116.1 10.5 REMARK 620 4 ASP D 79 OD2 117.5 8.6 10.4 REMARK 620 5 SO4 D 304 O2 99.2 99.1 107.4 97.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 67 OE2 REMARK 620 2 ASN D 107 OD1 70.3 REMARK 620 3 HIS D 111 NE2 95.1 99.7 REMARK 620 4 ASP D 218 OD2 149.7 105.0 115.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9F40 RELATED DB: PDB DBREF 9F41 A 1 245 UNP Q12200 NPC1_YEAST 1 245 DBREF 9F41 B 1 245 UNP Q12200 NPC1_YEAST 1 245 DBREF 9F41 C 1 245 UNP Q12200 NPC1_YEAST 1 245 DBREF 9F41 D 1 245 UNP Q12200 NPC1_YEAST 1 245 SEQADV 9F41 VAL A 246 UNP Q12200 EXPRESSION TAG SEQADV 9F41 PRO A 247 UNP Q12200 EXPRESSION TAG SEQADV 9F41 ARG A 248 UNP Q12200 EXPRESSION TAG SEQADV 9F41 VAL B 246 UNP Q12200 EXPRESSION TAG SEQADV 9F41 PRO B 247 UNP Q12200 EXPRESSION TAG SEQADV 9F41 ARG B 248 UNP Q12200 EXPRESSION TAG SEQADV 9F41 VAL C 246 UNP Q12200 EXPRESSION TAG SEQADV 9F41 PRO C 247 UNP Q12200 EXPRESSION TAG SEQADV 9F41 ARG C 248 UNP Q12200 EXPRESSION TAG SEQADV 9F41 VAL D 246 UNP Q12200 EXPRESSION TAG SEQADV 9F41 PRO D 247 UNP Q12200 EXPRESSION TAG SEQADV 9F41 ARG D 248 UNP Q12200 EXPRESSION TAG SEQRES 1 A 248 MET ASN VAL LEU TRP ILE ILE ALA LEU VAL GLY GLN LEU SEQRES 2 A 248 MET ARG LEU VAL GLN GLY THR ALA THR CYS ALA MET TYR SEQRES 3 A 248 GLY ASN CYS GLY LYS LYS SER VAL PHE GLY ASN GLU LEU SEQRES 4 A 248 PRO CYS PRO VAL PRO ARG SER PHE GLU PRO PRO VAL LEU SEQRES 5 A 248 SER ASP GLU THR SER LYS LEU LEU VAL GLU VAL CYS GLY SEQRES 6 A 248 GLU GLU TRP LYS GLU VAL ARG TYR ALA CYS CYS THR LYS SEQRES 7 A 248 ASP GLN VAL VAL ALA LEU ARG ASP ASN LEU GLN LYS ALA SEQRES 8 A 248 GLN PRO LEU ILE SER SER CYS PRO ALA CYS LEU LYS ASN SEQRES 9 A 248 PHE ASN ASN LEU PHE CYS HIS PHE THR CYS ALA ALA ASP SEQRES 10 A 248 GLN GLY ARG PHE VAL ASN ILE THR LYS VAL GLU LYS SER SEQRES 11 A 248 LYS GLU ASP LYS ASP ILE VAL ALA GLU LEU ASP VAL PHE SEQRES 12 A 248 MET ASN SER SER TRP ALA SER GLU PHE TYR ASP SER CYS SEQRES 13 A 248 LYS ASN ILE LYS PHE SER ALA THR ASN GLY TYR ALA MET SEQRES 14 A 248 ASP LEU ILE GLY GLY GLY ALA LYS ASN TYR SER GLN PHE SEQRES 15 A 248 LEU LYS PHE LEU GLY ASP ALA LYS PRO MET LEU GLY GLY SEQRES 16 A 248 SER PRO PHE GLN ILE ASN TYR LYS TYR ASP LEU ALA ASN SEQRES 17 A 248 GLU GLU LYS GLU TRP GLN GLU PHE ASN ASP GLU VAL TYR SEQRES 18 A 248 ALA CYS ASP ASP ALA GLN TYR LYS CYS ALA CYS SER ASP SEQRES 19 A 248 CYS GLN GLU SER CYS PRO HIS LEU LYS PRO LEU VAL PRO SEQRES 20 A 248 ARG SEQRES 1 B 248 MET ASN VAL LEU TRP ILE ILE ALA LEU VAL GLY GLN LEU SEQRES 2 B 248 MET ARG LEU VAL GLN GLY THR ALA THR CYS ALA MET TYR SEQRES 3 B 248 GLY ASN CYS GLY LYS LYS SER VAL PHE GLY ASN GLU LEU SEQRES 4 B 248 PRO CYS PRO VAL PRO ARG SER PHE GLU PRO PRO VAL LEU SEQRES 5 B 248 SER ASP GLU THR SER LYS LEU LEU VAL GLU VAL CYS GLY SEQRES 6 B 248 GLU GLU TRP LYS GLU VAL ARG TYR ALA CYS CYS THR LYS SEQRES 7 B 248 ASP GLN VAL VAL ALA LEU ARG ASP ASN LEU GLN LYS ALA SEQRES 8 B 248 GLN PRO LEU ILE SER SER CYS PRO ALA CYS LEU LYS ASN SEQRES 9 B 248 PHE ASN ASN LEU PHE CYS HIS PHE THR CYS ALA ALA ASP SEQRES 10 B 248 GLN GLY ARG PHE VAL ASN ILE THR LYS VAL GLU LYS SER SEQRES 11 B 248 LYS GLU ASP LYS ASP ILE VAL ALA GLU LEU ASP VAL PHE SEQRES 12 B 248 MET ASN SER SER TRP ALA SER GLU PHE TYR ASP SER CYS SEQRES 13 B 248 LYS ASN ILE LYS PHE SER ALA THR ASN GLY TYR ALA MET SEQRES 14 B 248 ASP LEU ILE GLY GLY GLY ALA LYS ASN TYR SER GLN PHE SEQRES 15 B 248 LEU LYS PHE LEU GLY ASP ALA LYS PRO MET LEU GLY GLY SEQRES 16 B 248 SER PRO PHE GLN ILE ASN TYR LYS TYR ASP LEU ALA ASN SEQRES 17 B 248 GLU GLU LYS GLU TRP GLN GLU PHE ASN ASP GLU VAL TYR SEQRES 18 B 248 ALA CYS ASP ASP ALA GLN TYR LYS CYS ALA CYS SER ASP SEQRES 19 B 248 CYS GLN GLU SER CYS PRO HIS LEU LYS PRO LEU VAL PRO SEQRES 20 B 248 ARG SEQRES 1 C 248 MET ASN VAL LEU TRP ILE ILE ALA LEU VAL GLY GLN LEU SEQRES 2 C 248 MET ARG LEU VAL GLN GLY THR ALA THR CYS ALA MET TYR SEQRES 3 C 248 GLY ASN CYS GLY LYS LYS SER VAL PHE GLY ASN GLU LEU SEQRES 4 C 248 PRO CYS PRO VAL PRO ARG SER PHE GLU PRO PRO VAL LEU SEQRES 5 C 248 SER ASP GLU THR SER LYS LEU LEU VAL GLU VAL CYS GLY SEQRES 6 C 248 GLU GLU TRP LYS GLU VAL ARG TYR ALA CYS CYS THR LYS SEQRES 7 C 248 ASP GLN VAL VAL ALA LEU ARG ASP ASN LEU GLN LYS ALA SEQRES 8 C 248 GLN PRO LEU ILE SER SER CYS PRO ALA CYS LEU LYS ASN SEQRES 9 C 248 PHE ASN ASN LEU PHE CYS HIS PHE THR CYS ALA ALA ASP SEQRES 10 C 248 GLN GLY ARG PHE VAL ASN ILE THR LYS VAL GLU LYS SER SEQRES 11 C 248 LYS GLU ASP LYS ASP ILE VAL ALA GLU LEU ASP VAL PHE SEQRES 12 C 248 MET ASN SER SER TRP ALA SER GLU PHE TYR ASP SER CYS SEQRES 13 C 248 LYS ASN ILE LYS PHE SER ALA THR ASN GLY TYR ALA MET SEQRES 14 C 248 ASP LEU ILE GLY GLY GLY ALA LYS ASN TYR SER GLN PHE SEQRES 15 C 248 LEU LYS PHE LEU GLY ASP ALA LYS PRO MET LEU GLY GLY SEQRES 16 C 248 SER PRO PHE GLN ILE ASN TYR LYS TYR ASP LEU ALA ASN SEQRES 17 C 248 GLU GLU LYS GLU TRP GLN GLU PHE ASN ASP GLU VAL TYR SEQRES 18 C 248 ALA CYS ASP ASP ALA GLN TYR LYS CYS ALA CYS SER ASP SEQRES 19 C 248 CYS GLN GLU SER CYS PRO HIS LEU LYS PRO LEU VAL PRO SEQRES 20 C 248 ARG SEQRES 1 D 248 MET ASN VAL LEU TRP ILE ILE ALA LEU VAL GLY GLN LEU SEQRES 2 D 248 MET ARG LEU VAL GLN GLY THR ALA THR CYS ALA MET TYR SEQRES 3 D 248 GLY ASN CYS GLY LYS LYS SER VAL PHE GLY ASN GLU LEU SEQRES 4 D 248 PRO CYS PRO VAL PRO ARG SER PHE GLU PRO PRO VAL LEU SEQRES 5 D 248 SER ASP GLU THR SER LYS LEU LEU VAL GLU VAL CYS GLY SEQRES 6 D 248 GLU GLU TRP LYS GLU VAL ARG TYR ALA CYS CYS THR LYS SEQRES 7 D 248 ASP GLN VAL VAL ALA LEU ARG ASP ASN LEU GLN LYS ALA SEQRES 8 D 248 GLN PRO LEU ILE SER SER CYS PRO ALA CYS LEU LYS ASN SEQRES 9 D 248 PHE ASN ASN LEU PHE CYS HIS PHE THR CYS ALA ALA ASP SEQRES 10 D 248 GLN GLY ARG PHE VAL ASN ILE THR LYS VAL GLU LYS SER SEQRES 11 D 248 LYS GLU ASP LYS ASP ILE VAL ALA GLU LEU ASP VAL PHE SEQRES 12 D 248 MET ASN SER SER TRP ALA SER GLU PHE TYR ASP SER CYS SEQRES 13 D 248 LYS ASN ILE LYS PHE SER ALA THR ASN GLY TYR ALA MET SEQRES 14 D 248 ASP LEU ILE GLY GLY GLY ALA LYS ASN TYR SER GLN PHE SEQRES 15 D 248 LEU LYS PHE LEU GLY ASP ALA LYS PRO MET LEU GLY GLY SEQRES 16 D 248 SER PRO PHE GLN ILE ASN TYR LYS TYR ASP LEU ALA ASN SEQRES 17 D 248 GLU GLU LYS GLU TRP GLN GLU PHE ASN ASP GLU VAL TYR SEQRES 18 D 248 ALA CYS ASP ASP ALA GLN TYR LYS CYS ALA CYS SER ASP SEQRES 19 D 248 CYS GLN GLU SER CYS PRO HIS LEU LYS PRO LEU VAL PRO SEQRES 20 D 248 ARG HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET MAN E 6 11 HET MAN E 7 11 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET MAN G 4 11 HET MAN G 5 11 HET MAN G 6 11 HET MAN G 7 11 HET MAN G 8 11 HET MAN G 9 11 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET MAN H 4 11 HET MAN H 5 11 HET MAN H 6 11 HET NAG I 1 14 HET NAG I 2 14 HET BMA I 3 11 HET MAN I 4 11 HET MAN I 5 11 HET NAG J 1 14 HET NAG J 2 14 HET BMA J 3 11 HET MAN J 4 11 HET NAG M 1 14 HET NAG M 2 14 HET BMA M 3 11 HET MAN M 4 11 HET MAN M 5 11 HET MAN M 6 11 HET NAG K 1 14 HET NAG K 2 14 HET BMA K 3 11 HET MAN K 4 11 HET MAN K 5 11 HET NAG L 1 14 HET NAG L 2 14 HET BMA L 3 11 HET MAN L 4 11 HET NAG N 1 14 HET NAG N 2 14 HET BMA N 3 11 HET MAN N 4 11 HET MAN N 5 11 HET MAN N 6 11 HET MAN N 7 11 HET NAG O 1 14 HET NAG O 2 14 HET BMA O 3 11 HET MAN O 4 11 HET NAG P 1 14 HET NAG P 2 14 HET BMA P 3 11 HET MAN P 4 11 HET CLR A 301 28 HET ZN A 302 1 HET SO4 A 303 5 HET MPD A 304 8 HET PEG A 305 7 HET MPD A 306 8 HET PEG A 307 7 HET SO4 A 308 5 HET SO4 A 309 5 HET ZN A 310 1 HET ZN A 311 1 HET ZN A 312 1 HET CLR B 301 28 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HET ZN B 306 1 HET SO4 B 307 5 HET SO4 B 308 5 HET ZN B 309 1 HET ZN B 310 1 HET CLR C 301 28 HET ZN C 302 1 HET ZN C 303 1 HET SO4 C 304 5 HET ZN C 305 1 HET ZN C 306 1 HET PEG C 307 7 HET PEG C 308 7 HET PEG C 309 7 HET SO4 C 310 5 HET ZN C 311 1 HET ZN C 312 1 HET ZN C 313 1 HET ZN C 314 1 HET ZN C 315 1 HET CLR D 301 28 HET ZN D 302 1 HET ZN D 303 1 HET SO4 D 304 5 HET SO4 D 305 5 HET ZN D 306 1 HET ZN D 307 1 HET ZN D 308 1 HET SO4 D 309 5 HET ZN D 310 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CLR CHOLESTEROL HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 NAG 24(C8 H15 N O6) FORMUL 5 BMA 12(C6 H12 O6) FORMUL 5 MAN 29(C6 H12 O6) FORMUL 17 CLR 4(C27 H46 O) FORMUL 18 ZN 26(ZN 2+) FORMUL 19 SO4 10(O4 S 2-) FORMUL 20 MPD 2(C6 H14 O2) FORMUL 21 PEG 5(C4 H10 O3) FORMUL 64 HOH *193(H2 O) HELIX 1 AA1 SER A 53 GLY A 65 1 13 HELIX 2 AA2 GLU A 66 LYS A 69 5 4 HELIX 3 AA3 THR A 77 SER A 96 1 20 HELIX 4 AA4 CYS A 98 ALA A 115 1 18 HELIX 5 AA5 ASP A 117 PHE A 121 1 5 HELIX 6 AA6 ASN A 145 SER A 155 1 11 HELIX 7 AA7 ALA A 168 GLY A 173 1 6 HELIX 8 AA8 ASN A 178 ASP A 188 1 11 HELIX 9 AA9 SER B 53 GLY B 65 1 13 HELIX 10 AB1 GLU B 66 LYS B 69 5 4 HELIX 11 AB2 THR B 77 SER B 96 1 20 HELIX 12 AB3 CYS B 98 ALA B 115 1 18 HELIX 13 AB4 ASP B 117 PHE B 121 1 5 HELIX 14 AB5 SER B 146 LYS B 157 1 12 HELIX 15 AB6 ALA B 168 GLY B 173 1 6 HELIX 16 AB7 ASN B 178 ASP B 188 1 11 HELIX 17 AB8 SER C 53 GLY C 65 1 13 HELIX 18 AB9 GLU C 66 LYS C 69 5 4 HELIX 19 AC1 THR C 77 SER C 96 1 20 HELIX 20 AC2 CYS C 98 ALA C 115 1 18 HELIX 21 AC3 ASP C 117 PHE C 121 1 5 HELIX 22 AC4 SER C 146 LYS C 157 1 12 HELIX 23 AC5 SER C 162 ASN C 165 5 4 HELIX 24 AC6 ALA C 168 GLY C 173 1 6 HELIX 25 AC7 ASN C 178 ASP C 188 1 11 HELIX 26 AC8 SER D 53 GLY D 65 1 13 HELIX 27 AC9 GLU D 66 LYS D 69 5 4 HELIX 28 AD1 THR D 77 GLN D 92 1 16 HELIX 29 AD2 CYS D 98 ALA D 115 1 18 HELIX 30 AD3 ASP D 117 PHE D 121 1 5 HELIX 31 AD4 ASN D 145 SER D 155 1 11 HELIX 32 AD5 ALA D 168 GLY D 173 1 6 HELIX 33 AD6 ASN D 178 ASP D 188 1 11 HELIX 34 AD7 LYS D 190 GLY D 194 5 5 SHEET 1 AA1 2 MET A 25 LYS A 31 0 SHEET 2 AA1 2 GLU A 38 PRO A 42 -1 O LEU A 39 N CYS A 29 SHEET 1 AA2 3 VAL A 122 LYS A 129 0 SHEET 2 AA2 3 ASP A 135 PHE A 143 -1 O ASP A 141 N ASN A 123 SHEET 3 AA2 3 GLN A 199 LYS A 203 1 O ASN A 201 N VAL A 142 SHEET 1 AA3 2 LYS A 160 PHE A 161 0 SHEET 2 AA3 2 GLY A 166 TYR A 167 -1 O GLY A 166 N PHE A 161 SHEET 1 AA4 2 MET B 25 LYS B 31 0 SHEET 2 AA4 2 GLU B 38 PRO B 42 -1 O LEU B 39 N CYS B 29 SHEET 1 AA5 3 VAL B 122 LYS B 129 0 SHEET 2 AA5 3 ASP B 135 PHE B 143 -1 O ILE B 136 N GLU B 128 SHEET 3 AA5 3 GLN B 199 LYS B 203 1 O ASN B 201 N VAL B 142 SHEET 1 AA6 2 LYS B 160 PHE B 161 0 SHEET 2 AA6 2 GLY B 166 TYR B 167 -1 O GLY B 166 N PHE B 161 SHEET 1 AA7 2 MET C 25 LYS C 31 0 SHEET 2 AA7 2 GLU C 38 PRO C 42 -1 O LEU C 39 N CYS C 29 SHEET 1 AA8 3 VAL C 122 LYS C 129 0 SHEET 2 AA8 3 ASP C 135 PHE C 143 -1 O ILE C 136 N GLU C 128 SHEET 3 AA8 3 GLN C 199 LYS C 203 1 O ASN C 201 N VAL C 142 SHEET 1 AA9 2 LYS C 160 PHE C 161 0 SHEET 2 AA9 2 GLY C 166 TYR C 167 -1 O GLY C 166 N PHE C 161 SHEET 1 AB1 2 MET D 25 LYS D 31 0 SHEET 2 AB1 2 GLU D 38 PRO D 42 -1 O LEU D 39 N CYS D 29 SHEET 1 AB2 3 VAL D 122 LYS D 129 0 SHEET 2 AB2 3 ASP D 135 PHE D 143 -1 O ASP D 141 N ASN D 123 SHEET 3 AB2 3 GLN D 199 LYS D 203 1 O ASN D 201 N VAL D 142 SSBOND 1 CYS A 23 CYS A 75 1555 1555 2.03 SSBOND 2 CYS A 29 CYS A 41 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 110 1555 1555 2.03 SSBOND 4 CYS A 76 CYS A 114 1555 1555 2.03 SSBOND 5 CYS A 98 CYS A 230 1555 1555 2.03 SSBOND 6 CYS A 101 CYS A 156 1555 1555 2.03 SSBOND 7 CYS A 223 CYS A 235 1555 1555 2.04 SSBOND 8 CYS A 232 CYS A 239 1555 1555 2.03 SSBOND 9 CYS B 23 CYS B 75 1555 1555 2.03 SSBOND 10 CYS B 29 CYS B 41 1555 1555 2.03 SSBOND 11 CYS B 64 CYS B 110 1555 1555 2.03 SSBOND 12 CYS B 76 CYS B 114 1555 1555 2.04 SSBOND 13 CYS B 98 CYS B 230 1555 1555 2.03 SSBOND 14 CYS B 101 CYS B 156 1555 1555 2.03 SSBOND 15 CYS B 223 CYS B 235 1555 1555 2.03 SSBOND 16 CYS B 232 CYS B 239 1555 1555 2.03 SSBOND 17 CYS C 23 CYS C 75 1555 1555 2.03 SSBOND 18 CYS C 29 CYS C 41 1555 1555 2.03 SSBOND 19 CYS C 64 CYS C 110 1555 1555 2.03 SSBOND 20 CYS C 76 CYS C 114 1555 1555 2.04 SSBOND 21 CYS C 98 CYS C 230 1555 1555 2.03 SSBOND 22 CYS C 101 CYS C 156 1555 1555 2.03 SSBOND 23 CYS C 223 CYS C 235 1555 1555 2.03 SSBOND 24 CYS C 232 CYS C 239 1555 1555 2.03 SSBOND 25 CYS D 23 CYS D 75 1555 1555 2.03 SSBOND 26 CYS D 29 CYS D 41 1555 1555 2.03 SSBOND 27 CYS D 64 CYS D 110 1555 1555 2.03 SSBOND 28 CYS D 76 CYS D 114 1555 1555 2.03 SSBOND 29 CYS D 98 CYS D 230 1555 1555 2.03 SSBOND 30 CYS D 101 CYS D 156 1555 1555 2.03 SSBOND 31 CYS D 223 CYS D 235 1555 1555 2.03 SSBOND 32 CYS D 232 CYS D 239 1555 1555 2.03 LINK ND2 ASN A 123 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 145 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 178 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN B 123 C1 NAG H 1 1555 1555 1.44 LINK ND2 ASN B 145 C1 NAG I 1 1555 1555 1.45 LINK ND2 ASN B 178 C1 NAG J 1 1555 1555 1.44 LINK ND2 ASN C 123 C1 NAG M 1 1555 1555 1.44 LINK ND2 ASN C 145 C1 NAG K 1 1555 1555 1.45 LINK ND2 ASN C 178 C1 NAG L 1 1555 1555 1.44 LINK ND2 ASN D 123 C1 NAG N 1 1555 1555 1.44 LINK ND2 ASN D 145 C1 NAG O 1 1555 1555 1.44 LINK ND2 ASN D 178 C1 NAG P 1 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.44 LINK O3 MAN E 4 C1 MAN E 5 1555 1555 1.48 LINK O6 MAN E 4 C1 MAN E 7 1555 1555 1.44 LINK O2 MAN E 5 C1 MAN E 6 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O6 BMA F 3 C1 MAN F 4 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.44 LINK O3 BMA G 3 C1 MAN G 4 1555 1555 1.43 LINK O6 BMA G 3 C1 MAN G 7 1555 1555 1.43 LINK O2 MAN G 4 C1 MAN G 5 1555 1555 1.44 LINK O2 MAN G 5 C1 MAN G 6 1555 1555 1.44 LINK O3 MAN G 7 C1 MAN G 8 1555 1555 1.46 LINK O6 MAN G 7 C1 MAN G 9 1555 1555 1.43 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.44 LINK O6 BMA H 3 C1 MAN H 4 1555 1555 1.44 LINK O3 MAN H 4 C1 MAN H 5 1555 1555 1.45 LINK O2 MAN H 5 C1 MAN H 6 1555 1555 1.44 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 NAG I 2 C1 BMA I 3 1555 1555 1.44 LINK O3 BMA I 3 C1 MAN I 4 1555 1555 1.45 LINK O6 BMA I 3 C1 MAN I 5 1555 1555 1.45 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44 LINK O4 NAG J 2 C1 BMA J 3 1555 1555 1.44 LINK O3 BMA J 3 C1 MAN J 4 1555 1555 1.44 LINK O4 NAG M 1 C1 NAG M 2 1555 1555 1.44 LINK O4 NAG M 2 C1 BMA M 3 1555 1555 1.44 LINK O6 BMA M 3 C1 MAN M 4 1555 1555 1.44 LINK O3 MAN M 4 C1 MAN M 5 1555 1555 1.45 LINK O6 MAN M 4 C1 MAN M 6 1555 1555 1.45 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.44 LINK O4 NAG K 2 C1 BMA K 3 1555 1555 1.44 LINK O3 BMA K 3 C1 MAN K 4 1555 1555 1.44 LINK O6 BMA K 3 C1 MAN K 5 1555 1555 1.45 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.44 LINK O4 NAG L 2 C1 BMA L 3 1555 1555 1.44 LINK O3 BMA L 3 C1 MAN L 4 1555 1555 1.44 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.44 LINK O4 NAG N 2 C1 BMA N 3 1555 1555 1.44 LINK O6 BMA N 3 C1 MAN N 4 1555 1555 1.43 LINK O3 MAN N 4 C1 MAN N 5 1555 1555 1.44 LINK O6 MAN N 4 C1 MAN N 7 1555 1555 1.45 LINK O2 MAN N 5 C1 MAN N 6 1555 1555 1.44 LINK O4 NAG O 1 C1 NAG O 2 1555 1555 1.44 LINK O4 NAG O 2 C1 BMA O 3 1555 1555 1.44 LINK O6 BMA O 3 C1 MAN O 4 1555 1555 1.46 LINK O4 NAG P 1 C1 NAG P 2 1555 1555 1.44 LINK O4 NAG P 2 C1 BMA P 3 1555 1555 1.44 LINK O3 BMA P 3 C1 MAN P 4 1555 1555 1.44 LINK OE2 GLU A 38 ZN ZN C 305 1555 2755 2.08 LINK OE1 GLU A 55 ZN ZN C 306 1555 2755 2.05 LINK OE2 GLU A 55 ZN ZN C 306 1555 2755 2.16 LINK OE1 GLU A 67 ZN ZN A 302 1555 1555 2.63 LINK OE2 GLU A 67 ZN ZN A 302 1555 1555 2.68 LINK OD2 ASP A 79 ZN ZN C 305 1555 2755 2.07 LINK OD1 ASN A 107 ZN ZN A 302 1555 1555 2.21 LINK NE2 HIS A 111 ZN ZN A 302 1555 1555 2.29 LINK OE2 GLU A 139 ZN ZN A 310 1555 1555 2.26 LINK OE2 GLU A 151 ZN ZN C 313 1555 3475 2.04 LINK OE1 GLU A 210 ZN ZN B 303 1555 1555 2.07 LINK OE2 GLU A 212 ZN ZN B 303 1555 1555 2.00 LINK OE2 GLU A 215 ZN ZN A 312 1555 1555 2.50 LINK OD2 ASP A 218 ZN ZN A 302 1555 1555 1.93 LINK OD2 ASP A 224 ZN ZN C 312 1555 3475 2.05 LINK OE2 GLU A 237 ZN ZN C 311 1555 3475 1.91 LINK OE1 GLU A 237 ZN ZN C 312 1555 3475 2.38 LINK O1 SO4 A 308 ZN ZN C 305 1555 2755 1.97 LINK O HOH A 405 ZN ZN C 313 3575 1555 2.13 LINK OE1 GLU B 38 ZN ZN B 306 1555 1555 2.45 LINK OE2 GLU B 38 ZN ZN B 306 1555 1555 2.25 LINK OE1 GLU B 55 ZN ZN B 306 1555 2755 1.98 LINK OE2 GLU B 55 ZN ZN B 306 1555 2755 2.41 LINK OE2 GLU B 67 ZN ZN B 302 1555 1555 2.52 LINK OD2 ASP B 79 ZN ZN B 306 1555 1555 2.02 LINK OD1 ASN B 107 ZN ZN B 302 1555 1555 2.43 LINK NE2 HIS B 111 ZN ZN B 302 1555 1555 2.31 LINK OE2 GLU B 139 ZN ZN B 309 1555 1555 2.35 LINK OE2 GLU B 151 ZN ZN B 304 1555 1555 2.09 LINK OD2 ASP B 154 ZN ZN B 304 1555 1555 2.59 LINK OD1 ASP B 154 ZN ZN B 305 1555 1555 2.30 LINK OD2 ASP B 154 ZN ZN B 305 1555 1555 2.66 LINK OE1 GLU B 210 ZN ZN B 303 1555 1555 1.96 LINK OE2 GLU B 212 ZN ZN B 303 1555 1555 1.97 LINK OD2 ASP B 218 ZN ZN B 302 1555 1555 1.86 LINK OD1 ASP B 224 ZN ZN D 303 1555 3485 2.45 LINK OD2 ASP B 224 ZN ZN D 303 1555 3485 2.20 LINK OE2 GLU B 237 ZN ZN B 305 1555 1555 1.98 LINK ZN ZN B 302 O HOH B 401 1555 1555 2.67 LINK ZN ZN B 304 OE2 GLU D 237 3585 1555 1.96 LINK ZN ZN B 305 OE2 GLU D 151 3585 1555 2.22 LINK ZN ZN B 305 O HOH D 402 1555 3485 2.10 LINK ZN ZN B 306 O2 SO4 B 307 1555 1555 1.96 LINK OE1 GLU C 38 ZN ZN C 306 1555 1555 2.67 LINK OE2 GLU C 38 ZN ZN C 306 1555 1555 2.04 LINK OE1 GLU C 55 ZN ZN C 305 1555 1555 1.98 LINK OE2 GLU C 55 ZN ZN C 305 1555 1555 2.40 LINK OE2 GLU C 67 ZN ZN C 302 1555 1555 2.48 LINK OD2 ASP C 79 ZN ZN C 306 1555 1555 2.03 LINK OD1 ASN C 107 ZN ZN C 302 1555 1555 2.18 LINK NE2 HIS C 111 ZN ZN C 302 1555 1555 2.32 LINK OE2 GLU C 139 ZN ZN C 315 1555 1555 2.28 LINK OE1 GLU C 151 ZN ZN C 311 1555 1555 2.25 LINK OE2 GLU C 151 ZN ZN C 311 1555 1555 2.69 LINK OD2 ASP C 154 ZN ZN C 311 1555 1555 2.41 LINK OD1 ASP C 154 ZN ZN C 313 1555 1555 2.30 LINK OD2 ASP C 154 ZN ZN C 313 1555 1555 2.66 LINK OE2 GLU C 210 ZN ZN C 303 1555 1555 1.87 LINK OE2 GLU C 212 ZN ZN C 303 1555 1555 1.96 LINK OE2 GLU C 215 ZN ZN C 314 1555 1555 2.47 LINK OD2 ASP C 218 ZN ZN C 302 1555 1555 1.94 LINK OD1 ASP C 224 ZN ZN C 312 1555 1555 2.21 LINK OD2 ASP C 224 ZN ZN C 312 1555 1555 2.36 LINK OE2 GLU C 237 ZN ZN C 313 1555 1555 1.98 LINK ZN ZN C 303 OE1 GLU D 210 1555 1555 2.04 LINK ZN ZN C 303 OE2 GLU D 212 1555 1555 1.94 LINK O1 SO4 C 304 ZN ZN C 306 1555 1555 2.07 LINK OE2 GLU D 38 ZN ZN D 306 1555 1555 2.21 LINK OE1 GLU D 55 ZN ZN D 306 1555 2855 2.15 LINK OE2 GLU D 55 ZN ZN D 306 1555 2855 2.39 LINK OE2 GLU D 67 ZN ZN D 302 1555 1555 2.67 LINK OD2 ASP D 79 ZN ZN D 306 1555 1555 2.25 LINK OD1 ASN D 107 ZN ZN D 302 1555 1555 2.09 LINK NE2 HIS D 111 ZN ZN D 302 1555 1555 2.30 LINK OE2 GLU D 139 ZN ZN D 307 1555 1555 2.16 LINK OE2 GLU D 215 ZN ZN D 308 1555 1555 2.68 LINK OD2 ASP D 218 ZN ZN D 302 1555 1555 2.10 LINK OD2 ASP D 224 ZN ZN D 303 1555 1555 2.01 LINK O2 SO4 D 304 ZN ZN D 306 1555 1555 1.95 CRYST1 92.030 109.780 151.360 90.00 90.00 90.00 P 21 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006607 0.00000 MTRIX1 1 -0.999908 -0.013459 -0.001772 162.56719 1 MTRIX2 1 0.013575 -0.991945 -0.125938 272.28266 1 MTRIX3 1 -0.000063 -0.125950 0.992037 17.09044 1 MTRIX1 2 0.999801 0.019394 -0.004609 44.03965 1 MTRIX2 2 -0.018629 0.991305 0.130262 2.53332 1 MTRIX3 2 0.007095 -0.130150 0.991469 18.56032 1 MTRIX1 3 -0.999811 0.017778 -0.007905 205.14007 1 MTRIX2 3 -0.017807 -0.999835 0.003550 275.39856 1 MTRIX3 3 -0.007841 0.003690 0.999962 1.52410 1