HEADER CELL CYCLE 30-APR-24 9F5Q TITLE CRYSTAL STRUCTURE OF SELENOMETHIONINE-LABELLED KINETOPLASTID TITLE 2 KINETOCHORE PROTEIN KKT23 ACETYLTRANSFERASE DOMAIN FROM TRYPANOSOMA TITLE 3 BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLTRANSFERASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI TREU927; SOURCE 3 ORGANISM_TAXID: 185431; SOURCE 4 GENE: TB10.70.0180; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINETOCHORE, KINETOPLASTID, HISTONE, ACETYLTRANSFERASE, MITOSIS, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR P.LUDZIA,M.ISHII,B.AKIYOSHI REVDAT 1 28-AUG-24 9F5Q 0 JRNL AUTH P.LUDZIA,M.ISHII,B.AKIYOSHI JRNL TITL THE KINETOPLASTID KINETOCHORE PROTEIN KKT23 JRNL TITL 2 ACETYLTRANSFERASE IS A STRUCTURAL HOMOLOG OF GCN5 THAT JRNL TITL 3 ACETYLATES THE HISTONE H2A C-TERMINAL TAIL JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2024.08.16.608276 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 31137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3404 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.47000 REMARK 3 B22 (A**2) : 2.68000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : -0.89000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : -0.54000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3619 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3320 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4918 ; 1.730 ; 1.833 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7633 ; 0.584 ; 1.730 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.986 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 25 ;16.125 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;13.441 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4144 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 858 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1705 ; 2.975 ; 2.733 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1704 ; 2.960 ; 2.733 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2120 ; 4.069 ; 4.874 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2121 ; 4.068 ; 4.877 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1914 ; 4.545 ; 3.051 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1903 ; 4.498 ; 3.055 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2799 ; 6.221 ; 5.443 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4052 ; 7.749 ;30.840 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4032 ; 7.734 ;30.870 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9F5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-24. REMARK 100 THE DEPOSITION ID IS D_1292138204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32753 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% V/V JEFFAMINE M-2070, 20% V/V REMARK 280 DMSO, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 125 REMARK 465 THR A 192 REMARK 465 HIS A 193 REMARK 465 SER A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 THR A 197 REMARK 465 ARG A 198 REMARK 465 ARG A 199 REMARK 465 ARG A 200 REMARK 465 GLN B 125 REMARK 465 GLN B 126 REMARK 465 ALA B 137 REMARK 465 ILE B 138 REMARK 465 GLN B 139 REMARK 465 GLN B 191 REMARK 465 THR B 192 REMARK 465 HIS B 193 REMARK 465 SER B 194 REMARK 465 THR B 195 REMARK 465 ARG B 196 REMARK 465 THR B 197 REMARK 465 ARG B 198 REMARK 465 ARG B 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 126 CG CD OE1 NE2 REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ASP B 140 CG OD1 OD2 REMARK 470 ARG B 200 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 ARG B 320 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 525 O HOH A 568 2.10 REMARK 500 NH2 ARG A 333 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 228 OE2 GLU B 229 1454 1.95 REMARK 500 OE2 GLU A 229 OH TYR B 228 1454 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 252 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 148 -93.60 -102.74 REMARK 500 GLU A 229 -124.22 67.18 REMARK 500 GLU B 229 -123.71 58.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 297 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 598 DISTANCE = 10.24 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9EVQ RELATED DB: PDB REMARK 900 NATIVE STRUCTURE OF KKT23 125-348 DBREF 9F5Q A 125 348 UNP Q38AU6 Q38AU6_TRYB2 125 348 DBREF 9F5Q B 125 348 UNP Q38AU6 Q38AU6_TRYB2 125 348 SEQRES 1 A 224 GLN GLN LEU THR TYR SER GLN LEU VAL LEU ARG THR ALA SEQRES 2 A 224 ILE GLN ASP GLN TYR SER LYS LEU SER GLY ASP GLY PRO SEQRES 3 A 224 PHE PRO MSE ALA PHE GLY LEU VAL LEU SER GLU GLU GLU SEQRES 4 A 224 ARG ARG GLU VAL ILE ASP LEU TYR SER LEU GLN PHE GLN SEQRES 5 A 224 TYR PRO ASP GLN PRO GLU LEU GLN ARG LEU VAL ILE LEU SEQRES 6 A 224 PRO GLN THR HIS SER THR ARG THR ARG ARG ARG ALA LYS SEQRES 7 A 224 GLY SER TYR THR TRP TYR LEU ARG SER LEU ASN THR ASN SEQRES 8 A 224 GLU MSE VAL CYS ALA VAL THR ILE MSE ALA HIS HIS TYR SEQRES 9 A 224 GLU THR HIS HIS PHE VAL GLU VAL PRO LEU PHE ALA THR SEQRES 10 A 224 GLY VAL GLY TYR LYS LYS HIS GLY PHE GLY ARG LEU MSE SEQRES 11 A 224 ASN ALA ALA LEU LEU GLN TRP CYS VAL GLU THR GLY PHE SEQRES 12 A 224 GLU PHE VAL MSE ILE SER ALA ASP VAL LYS ALA ILE PRO SEQRES 13 A 224 PHE TRP SER HIS LEU GLY TYR LYS THR MSE GLU LYS SER SEQRES 14 A 224 GLU LEU THR ARG ILE VAL PHE TYR TYR GLU HIS ASN CYS SEQRES 15 A 224 TYR LYS PHE LYS GLY ALA GLU VAL MSE ILE ARG TYR CYS SEQRES 16 A 224 ARG THR TRP PRO THR ASP GLY VAL LYS GLU ALA LEU ALA SEQRES 17 A 224 ARG VAL GLN LYS VAL ILE VAL SER GLY HIS VAL GLY LEU SEQRES 18 A 224 MSE ASP ALA SEQRES 1 B 224 GLN GLN LEU THR TYR SER GLN LEU VAL LEU ARG THR ALA SEQRES 2 B 224 ILE GLN ASP GLN TYR SER LYS LEU SER GLY ASP GLY PRO SEQRES 3 B 224 PHE PRO MSE ALA PHE GLY LEU VAL LEU SER GLU GLU GLU SEQRES 4 B 224 ARG ARG GLU VAL ILE ASP LEU TYR SER LEU GLN PHE GLN SEQRES 5 B 224 TYR PRO ASP GLN PRO GLU LEU GLN ARG LEU VAL ILE LEU SEQRES 6 B 224 PRO GLN THR HIS SER THR ARG THR ARG ARG ARG ALA LYS SEQRES 7 B 224 GLY SER TYR THR TRP TYR LEU ARG SER LEU ASN THR ASN SEQRES 8 B 224 GLU MSE VAL CYS ALA VAL THR ILE MSE ALA HIS HIS TYR SEQRES 9 B 224 GLU THR HIS HIS PHE VAL GLU VAL PRO LEU PHE ALA THR SEQRES 10 B 224 GLY VAL GLY TYR LYS LYS HIS GLY PHE GLY ARG LEU MSE SEQRES 11 B 224 ASN ALA ALA LEU LEU GLN TRP CYS VAL GLU THR GLY PHE SEQRES 12 B 224 GLU PHE VAL MSE ILE SER ALA ASP VAL LYS ALA ILE PRO SEQRES 13 B 224 PHE TRP SER HIS LEU GLY TYR LYS THR MSE GLU LYS SER SEQRES 14 B 224 GLU LEU THR ARG ILE VAL PHE TYR TYR GLU HIS ASN CYS SEQRES 15 B 224 TYR LYS PHE LYS GLY ALA GLU VAL MSE ILE ARG TYR CYS SEQRES 16 B 224 ARG THR TRP PRO THR ASP GLY VAL LYS GLU ALA LEU ALA SEQRES 17 B 224 ARG VAL GLN LYS VAL ILE VAL SER GLY HIS VAL GLY LEU SEQRES 18 B 224 MSE ASP ALA MODRES 9F5Q MSE A 153 MET MODIFIED RESIDUE MODRES 9F5Q MSE A 217 MET MODIFIED RESIDUE MODRES 9F5Q MSE A 224 MET MODIFIED RESIDUE MODRES 9F5Q MSE A 254 MET MODIFIED RESIDUE MODRES 9F5Q MSE A 271 MET MODIFIED RESIDUE MODRES 9F5Q MSE A 290 MET MODIFIED RESIDUE MODRES 9F5Q MSE A 315 MET MODIFIED RESIDUE MODRES 9F5Q MSE A 346 MET MODIFIED RESIDUE MODRES 9F5Q MSE B 153 MET MODIFIED RESIDUE MODRES 9F5Q MSE B 217 MET MODIFIED RESIDUE MODRES 9F5Q MSE B 224 MET MODIFIED RESIDUE MODRES 9F5Q MSE B 254 MET MODIFIED RESIDUE MODRES 9F5Q MSE B 271 MET MODIFIED RESIDUE MODRES 9F5Q MSE B 290 MET MODIFIED RESIDUE MODRES 9F5Q MSE B 315 MET MODIFIED RESIDUE MODRES 9F5Q MSE B 346 MET MODIFIED RESIDUE HET MSE A 153 8 HET MSE A 217 8 HET MSE A 224 8 HET MSE A 254 8 HET MSE A 271 8 HET MSE A 290 8 HET MSE A 315 8 HET MSE A 346 8 HET MSE B 153 8 HET MSE B 217 8 HET MSE B 224 8 HET MSE B 254 8 HET MSE B 271 8 HET MSE B 290 8 HET MSE B 315 8 HET MSE B 346 8 HET ACO A 401 51 HET ACO B 401 51 HETNAM MSE SELENOMETHIONINE HETNAM ACO ACETYL COENZYME *A FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 ACO 2(C23 H38 N7 O17 P3 S) FORMUL 5 HOH *175(H2 O) HELIX 1 AA1 SER A 160 LEU A 173 1 14 HELIX 2 AA2 ASP A 179 VAL A 187 1 9 HELIX 3 AA3 GLY A 249 THR A 265 1 17 HELIX 4 AA4 ALA A 278 LEU A 285 1 8 HELIX 5 AA5 GLU A 291 ARG A 297 1 7 HELIX 6 AA6 ILE A 298 CYS A 306 1 9 HELIX 7 AA7 ARG A 320 TRP A 322 5 3 HELIX 8 AA8 ASP A 325 ARG A 333 1 9 HELIX 9 AA9 SER B 160 LEU B 173 1 14 HELIX 10 AB1 ASP B 179 VAL B 187 1 9 HELIX 11 AB2 GLY B 249 THR B 265 1 17 HELIX 12 AB3 ALA B 278 LEU B 285 1 8 HELIX 13 AB4 GLU B 291 ILE B 298 1 8 HELIX 14 AB5 ILE B 298 CYS B 306 1 9 HELIX 15 AB6 ARG B 320 TRP B 322 5 3 HELIX 16 AB7 ASP B 325 VAL B 334 1 10 SHEET 1 AA1 2 TYR A 129 SER A 130 0 SHEET 2 AA1 2 LYS A 308 PHE A 309 1 O LYS A 308 N SER A 130 SHEET 1 AA2 2 VAL A 133 LEU A 134 0 SHEET 2 AA2 2 PHE A 175 TYR A 177 -1 O GLN A 176 N VAL A 133 SHEET 1 AA3 8 LYS A 288 THR A 289 0 SHEET 2 AA3 8 GLU A 313 TYR A 318 -1 O ILE A 316 N LYS A 288 SHEET 3 AA3 8 PHE A 269 ALA A 274 -1 N ILE A 272 O MSE A 315 SHEET 4 AA3 8 HIS A 231 THR A 241 1 N VAL A 234 O MSE A 271 SHEET 5 AA3 8 MSE A 217 TYR A 228 -1 N HIS A 226 O PHE A 233 SHEET 6 AA3 8 GLY A 203 SER A 211 -1 N LEU A 209 O VAL A 218 SHEET 7 AA3 8 PHE A 151 LEU A 157 -1 N ALA A 154 O ARG A 210 SHEET 8 AA3 8 VAL A 337 VAL A 339 1 O ILE A 338 N MSE A 153 SHEET 1 AA4 2 TYR B 129 SER B 130 0 SHEET 2 AA4 2 LYS B 308 PHE B 309 1 O LYS B 308 N SER B 130 SHEET 1 AA5 2 VAL B 133 LEU B 134 0 SHEET 2 AA5 2 PHE B 175 TYR B 177 -1 O GLN B 176 N VAL B 133 SHEET 1 AA6 8 LYS B 288 THR B 289 0 SHEET 2 AA6 8 GLU B 313 TYR B 318 -1 O ILE B 316 N LYS B 288 SHEET 3 AA6 8 PHE B 269 ALA B 274 -1 N ILE B 272 O MSE B 315 SHEET 4 AA6 8 HIS B 231 THR B 241 1 N VAL B 234 O MSE B 271 SHEET 5 AA6 8 MSE B 217 TYR B 228 -1 N HIS B 226 O PHE B 233 SHEET 6 AA6 8 GLY B 203 SER B 211 -1 N LEU B 209 O VAL B 218 SHEET 7 AA6 8 PHE B 151 LEU B 157 -1 N GLY B 156 O TYR B 208 SHEET 8 AA6 8 VAL B 337 VAL B 339 1 O ILE B 338 N MSE B 153 LINK C PRO A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N ALA A 154 1555 1555 1.34 LINK C GLU A 216 N MSE A 217 1555 1555 1.33 LINK C MSE A 217 N VAL A 218 1555 1555 1.34 LINK C ILE A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N ALA A 225 1555 1555 1.34 LINK C LEU A 253 N MSE A 254 1555 1555 1.34 LINK C MSE A 254 N ASN A 255 1555 1555 1.33 LINK C VAL A 270 N MSE A 271 1555 1555 1.34 LINK C MSE A 271 N ILE A 272 1555 1555 1.34 LINK C THR A 289 N MSE A 290 1555 1555 1.33 LINK C MSE A 290 N GLU A 291 1555 1555 1.34 LINK C VAL A 314 N MSE A 315 1555 1555 1.31 LINK C MSE A 315 N ILE A 316 1555 1555 1.34 LINK C LEU A 345 N MSE A 346 1555 1555 1.33 LINK C MSE A 346 N ASP A 347 1555 1555 1.34 LINK C PRO B 152 N MSE B 153 1555 1555 1.34 LINK C MSE B 153 N ALA B 154 1555 1555 1.35 LINK C GLU B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N VAL B 218 1555 1555 1.34 LINK C ILE B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N ALA B 225 1555 1555 1.33 LINK C LEU B 253 N MSE B 254 1555 1555 1.35 LINK C MSE B 254 N ASN B 255 1555 1555 1.33 LINK C VAL B 270 N MSE B 271 1555 1555 1.33 LINK C MSE B 271 N ILE B 272 1555 1555 1.34 LINK C THR B 289 N MSE B 290 1555 1555 1.32 LINK C MSE B 290 N GLU B 291 1555 1555 1.33 LINK C VAL B 314 N MSE B 315 1555 1555 1.33 LINK C MSE B 315 N ILE B 316 1555 1555 1.33 LINK C LEU B 345 N MSE B 346 1555 1555 1.34 LINK C MSE B 346 N ASP B 347 1555 1555 1.34 CISPEP 1 TYR A 177 PRO A 178 0 -3.86 CISPEP 2 GLY B 149 PRO B 150 0 2.93 CISPEP 3 TYR B 177 PRO B 178 0 5.40 CRYST1 42.299 44.528 68.969 100.54 103.17 101.33 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023641 0.004737 0.006860 0.00000 SCALE2 0.000000 0.022904 0.005624 0.00000 SCALE3 0.000000 0.000000 0.015333 0.00000