HEADER PROTON TRANSPORT 07-MAY-24 9F9G TITLE LASER EXCITATION EFFECTS ON BR: REPROCESSED DARK FROM NOGLY ET AL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BR,BACTERIOOPSIN,BO; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; SOURCE 3 ORGANISM_TAXID: 2242; SOURCE 4 ATCC: 700922; SOURCE 5 GENE: BOP, VNG_1467G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIORHODOSPIN, PROTON TRANSPORT, MEMBRANE, RETINAL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, SERIAL CRYSTALLOGRAPHY, LASER EXCITATION EXPDTA X-RAY DIFFRACTION AUTHOR Q.BERTRAND,T.WEINERT,J.STANDFUSS REVDAT 1 22-JAN-25 9F9G 0 JRNL AUTH Q.BERTRAND,P.NOGLY,E.NANGO,D.KEKILLI,G.KHUSAINOV,A.FURRER, JRNL AUTH 2 D.JAMES,F.DWORKOWSKI,P.SKOPINTSEV,S.MOUS,I.MARTIEL, JRNL AUTH 3 P.BORJESSON,G.ORTOLANI,C.Y.HUANG,M.KEPA,D.OZEROV,S.BRUNLE, JRNL AUTH 4 V.PANNEELS,T.TANAKA,R.TANAKA,K.TONO,S.OWADA,P.J.M.JOHNSON, JRNL AUTH 5 K.NASS,G.KNOPP,C.CIRELLI,C.MILNE,G.SCHERTLER,S.IWATA, JRNL AUTH 6 R.NEUTZE,T.WEINERT,J.STANDFUSS JRNL TITL STRUCTURAL EFFECTS OF HIGH LASER POWER DENSITIES ON AN EARLY JRNL TITL 2 BACTERIORHODOPSIN PHOTOCYCLE INTERMEDIATE. JRNL REF NAT COMMUN V. 15 10278 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39604356 JRNL DOI 10.1038/S41467-024-54422-8 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20_4459: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.510 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.0600 - 3.4700 1.00 3046 148 0.1537 0.1855 REMARK 3 2 3.4700 - 2.7500 1.00 3025 151 0.1519 0.1563 REMARK 3 3 2.7500 - 2.4100 1.00 3013 137 0.1413 0.1623 REMARK 3 4 2.4100 - 2.1900 1.00 3017 144 0.1215 0.1380 REMARK 3 5 2.1900 - 2.0300 1.00 3012 139 0.1164 0.1395 REMARK 3 6 2.0300 - 1.9100 1.00 3009 143 0.1291 0.1630 REMARK 3 7 1.9100 - 1.8100 1.00 3001 137 0.1281 0.1592 REMARK 3 8 1.8100 - 1.7400 1.00 2998 138 0.1282 0.1493 REMARK 3 9 1.7400 - 1.6700 1.00 3010 147 0.1605 0.2130 REMARK 3 10 1.6700 - 1.6100 1.00 2988 141 0.2107 0.2355 REMARK 3 11 1.6100 - 1.5600 1.00 3009 139 0.1852 0.2053 REMARK 3 12 1.5600 - 1.5200 1.00 2989 138 0.1970 0.2207 REMARK 3 13 1.5200 - 1.4800 1.00 3008 144 0.2526 0.2853 REMARK 3 14 1.4800 - 1.4400 1.00 2988 141 0.3903 0.4514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 2171 REMARK 3 ANGLE : 1.947 2887 REMARK 3 CHIRALITY : 0.135 315 REMARK 3 PLANARITY : 0.015 341 REMARK 3 DIHEDRAL : 16.230 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5671 27.0338 29.5755 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.1811 REMARK 3 T33: 0.2815 T12: 0.0250 REMARK 3 T13: -0.0145 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.6411 L22: 7.4287 REMARK 3 L33: 5.5488 L12: 1.8662 REMARK 3 L13: -2.7985 L23: -5.7472 REMARK 3 S TENSOR REMARK 3 S11: -0.1610 S12: 0.0690 S13: -0.1798 REMARK 3 S21: -0.2602 S22: -0.0383 S23: -0.4132 REMARK 3 S31: 0.4376 S32: 0.3083 S33: 0.1283 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1110 27.7038 41.1205 REMARK 3 T TENSOR REMARK 3 T11: 0.2359 T22: 0.1904 REMARK 3 T33: 0.2307 T12: 0.0128 REMARK 3 T13: -0.0352 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.6660 L22: 1.9552 REMARK 3 L33: 2.3534 L12: -0.1958 REMARK 3 L13: 0.0497 L23: 1.1900 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: -0.2863 S13: -0.0822 REMARK 3 S21: 0.3969 S22: 0.0650 S23: -0.0576 REMARK 3 S31: 0.4148 S32: -0.1883 S33: 0.0201 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7625 38.7229 27.8666 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.1784 REMARK 3 T33: 0.2173 T12: 0.0032 REMARK 3 T13: -0.0062 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.8063 L22: 2.0993 REMARK 3 L33: 3.8471 L12: -0.2339 REMARK 3 L13: 0.2546 L23: 0.8944 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: 0.1646 S13: 0.0588 REMARK 3 S21: -0.2038 S22: -0.0206 S23: -0.0650 REMARK 3 S31: -0.1630 S32: -0.1567 S33: 0.0514 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5348 45.8530 37.1586 REMARK 3 T TENSOR REMARK 3 T11: 0.2033 T22: 0.1938 REMARK 3 T33: 0.2261 T12: 0.0117 REMARK 3 T13: -0.0146 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.6991 L22: 2.0664 REMARK 3 L33: 5.8493 L12: -0.1033 REMARK 3 L13: -0.0212 L23: -1.8876 REMARK 3 S TENSOR REMARK 3 S11: 0.1085 S12: -0.2017 S13: 0.0126 REMARK 3 S21: 0.1586 S22: 0.1582 S23: 0.0513 REMARK 3 S31: 0.0711 S32: -0.1436 S33: -0.2447 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0776 53.1062 32.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.1750 REMARK 3 T33: 0.2525 T12: -0.0153 REMARK 3 T13: -0.0079 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.8093 L22: 2.5119 REMARK 3 L33: 2.0136 L12: -0.1921 REMARK 3 L13: 0.1925 L23: -1.9882 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.0753 S13: 0.2606 REMARK 3 S21: 0.2241 S22: -0.0374 S23: -0.1320 REMARK 3 S31: -0.4792 S32: 0.2274 S33: 0.0360 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6008 46.5214 57.6937 REMARK 3 T TENSOR REMARK 3 T11: 1.2221 T22: 0.8253 REMARK 3 T33: 0.6151 T12: -0.1134 REMARK 3 T13: -0.0596 T23: -0.1373 REMARK 3 L TENSOR REMARK 3 L11: 6.1991 L22: 2.6694 REMARK 3 L33: 4.8416 L12: -3.8361 REMARK 3 L13: 5.3057 L23: -3.5812 REMARK 3 S TENSOR REMARK 3 S11: -0.7252 S12: -1.8965 S13: 1.1991 REMARK 3 S21: 1.3881 S22: 0.2067 S23: -0.3373 REMARK 3 S31: -2.5507 S32: -0.2152 S33: 0.6404 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9027 42.0320 35.3948 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.2146 REMARK 3 T33: 0.2708 T12: -0.0279 REMARK 3 T13: -0.0562 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.0523 L22: 1.4639 REMARK 3 L33: 3.0069 L12: -0.1144 REMARK 3 L13: -0.4253 L23: -0.7973 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.1050 S13: 0.0472 REMARK 3 S21: 0.1975 S22: 0.0359 S23: -0.2660 REMARK 3 S31: -0.2458 S32: 0.1042 S33: -0.0017 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7329 31.8551 53.9968 REMARK 3 T TENSOR REMARK 3 T11: 0.5077 T22: 0.6334 REMARK 3 T33: 0.4284 T12: -0.0092 REMARK 3 T13: -0.1807 T23: 0.0720 REMARK 3 L TENSOR REMARK 3 L11: 8.6293 L22: 8.5322 REMARK 3 L33: 5.7948 L12: -4.7389 REMARK 3 L13: -6.3285 L23: 5.9889 REMARK 3 S TENSOR REMARK 3 S11: -0.6180 S12: -0.2890 S13: 0.7057 REMARK 3 S21: 0.9577 S22: 0.7909 S23: -1.4020 REMARK 3 S31: 0.4303 S32: 1.5108 S33: -0.0755 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9572 29.9782 64.6507 REMARK 3 T TENSOR REMARK 3 T11: 0.7801 T22: 0.5162 REMARK 3 T33: 0.2578 T12: -0.0644 REMARK 3 T13: -0.0827 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 4.0773 L22: 0.9181 REMARK 3 L33: 1.0785 L12: -1.9348 REMARK 3 L13: 2.0970 L23: -0.9951 REMARK 3 S TENSOR REMARK 3 S11: 0.9930 S12: -0.2998 S13: -0.4717 REMARK 3 S21: 0.5281 S22: -0.3824 S23: -0.1626 REMARK 3 S31: 0.4865 S32: 0.3063 S33: -0.6551 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9F9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292135920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : CXI REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD CXI-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.9.1 REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL 0.9.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45078 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 20.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1371. REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA/K PHOSPHATE BUFFER PH 5.6 30 REMARK 280 % PEG 2000, LIPIDIC CUBIC PHASE, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.55000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.55000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 31.16000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 53.97070 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -31.16000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 53.97070 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 79 CE1 TYR A 79 CZ -0.080 REMARK 500 TRP A 182 CE3 TRP A 182 CZ3 0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 57 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 64 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 PHE A 88 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 96 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 MET A 209 CG - SD - CE ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 163 -169.78 -111.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LI1 A 301 REMARK 610 LI1 A 302 REMARK 610 LI1 A 303 REMARK 610 LI1 A 304 REMARK 610 LI1 A 305 REMARK 610 LI1 A 306 REMARK 610 LI1 A 312 REMARK 610 LI1 A 313 REMARK 610 LI1 A 314 REMARK 610 LI1 A 315 REMARK 610 LI1 A 316 REMARK 610 LI1 A 317 DBREF 9F9G A 4 234 UNP P02945 BACR_HALSA 17 247 SEQRES 1 A 231 ILE THR GLY ARG PRO GLU TRP ILE TRP LEU ALA LEU GLY SEQRES 2 A 231 THR ALA LEU MET GLY LEU GLY THR LEU TYR PHE LEU VAL SEQRES 3 A 231 LYS GLY MET GLY VAL SER ASP PRO ASP ALA LYS LYS PHE SEQRES 4 A 231 TYR ALA ILE THR THR LEU VAL PRO ALA ILE ALA PHE THR SEQRES 5 A 231 MET TYR LEU SER MET LEU LEU GLY TYR GLY LEU THR MET SEQRES 6 A 231 VAL PRO PHE GLY GLY GLU GLN ASN PRO ILE TYR TRP ALA SEQRES 7 A 231 ARG TYR ALA ASP TRP LEU PHE THR THR PRO LEU LEU LEU SEQRES 8 A 231 LEU ASP LEU ALA LEU LEU VAL ASP ALA ASP GLN GLY THR SEQRES 9 A 231 ILE LEU ALA LEU VAL GLY ALA ASP GLY ILE MET ILE GLY SEQRES 10 A 231 THR GLY LEU VAL GLY ALA LEU THR LYS VAL TYR SER TYR SEQRES 11 A 231 ARG PHE VAL TRP TRP ALA ILE SER THR ALA ALA MET LEU SEQRES 12 A 231 TYR ILE LEU TYR VAL LEU PHE PHE GLY PHE THR SER LYS SEQRES 13 A 231 ALA GLU SER MET ARG PRO GLU VAL ALA SER THR PHE LYS SEQRES 14 A 231 VAL LEU ARG ASN VAL THR VAL VAL LEU TRP SER ALA TYR SEQRES 15 A 231 PRO VAL VAL TRP LEU ILE GLY SER GLU GLY ALA GLY ILE SEQRES 16 A 231 VAL PRO LEU ASN ILE GLU THR LEU LEU PHE MET VAL LEU SEQRES 17 A 231 ASP VAL SER ALA LYS VAL GLY PHE GLY LEU ILE LEU LEU SEQRES 18 A 231 ARG SER ARG ALA ILE PHE GLY GLU ALA GLU HET LI1 A 301 6 HET LI1 A 302 19 HET LI1 A 303 8 HET LI1 A 304 16 HET LI1 A 305 19 HET LI1 A 306 17 HET OLC A 307 65 HET OLC A 308 65 HET OLC A 309 65 HET OLC A 310 65 HET OLC A 311 65 HET LI1 A 312 16 HET LI1 A 313 19 HET LI1 A 314 8 HET LI1 A 315 13 HET LI1 A 316 19 HET LI1 A 317 6 HET RET A 318 48 HETNAM LI1 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14- HETNAM 2 LI1 TRIMETHYLHEXADECAN-16-YL]GLYCEROL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM RET RETINAL HETSYN LI1 LIPID FRAGMENT HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 LI1 12(C42 H86 O3) FORMUL 8 OLC 5(C21 H40 O4) FORMUL 19 RET C20 H28 O FORMUL 20 HOH *46(H2 O) HELIX 1 AA1 GLU A 9 MET A 32 1 24 HELIX 2 AA2 ASP A 36 LEU A 62 1 27 HELIX 3 AA3 TRP A 80 VAL A 101 1 22 HELIX 4 AA4 ASP A 104 THR A 128 1 25 HELIX 5 AA5 VAL A 130 GLY A 155 1 26 HELIX 6 AA6 GLY A 155 GLU A 161 1 7 HELIX 7 AA7 ARG A 164 GLY A 192 1 29 HELIX 8 AA8 PRO A 200 ARG A 225 1 26 HELIX 9 AA9 SER A 226 PHE A 230 5 5 SHEET 1 AA1 2 THR A 67 PHE A 71 0 SHEET 2 AA1 2 GLU A 74 ILE A 78 -1 O ILE A 78 N THR A 67 LINK NZ LYS A 216 C15 RET A 318 1555 1555 1.35 CRYST1 62.320 62.320 111.100 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016046 0.009264 0.000000 0.00000 SCALE2 0.000000 0.018529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009001 0.00000