HEADER FLAVOPROTEIN 16-MAY-24 9FD5 TITLE FLAVIN REDUCTASE THDF IN COMPLEX WITH TWO BOUND FADS IN SPACE GROUP TITLE 2 P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN REDUCTASE; COMPND 3 CHAIN: B, A, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ALBOGRISEOLUS; SOURCE 3 ORGANISM_TAXID: 1887; SOURCE 4 GENE: THDF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS FLAVIN REDUCTASE, FAD, OXIDOREDUCTASE, NADH:FAD OXDIOREDUCTASE, KEYWDS 2 FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BORK,M.F.NAGEL,W.KELLER,H.H.NIEMANN REVDAT 1 25-DEC-24 9FD5 0 JRNL AUTH H.J.HORSTMEIER,S.BORK,M.F.NAGEL,W.KELLER,J.SPROB,N.DIEPOLD, JRNL AUTH 2 M.RUPPEL,T.KOTTKE,H.H.NIEMANN JRNL TITL THE NADH-DEPENDENT FLAVIN REDUCTASE THDF FOLLOWS AN ORDERED JRNL TITL 2 SEQUENTIAL MECHANISM THOUGH CRYSTAL STRUCTURES REVEAL TWO JRNL TITL 3 FAD MOLECULES IN THE ACTIVE SITE JRNL REF JOURNAL OF BIOLOGICAL JRNL REF 2 CHEMISTRY REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 129926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 6445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0700 - 4.0900 0.99 4831 233 0.1382 0.1534 REMARK 3 2 4.0800 - 3.2400 0.99 4761 237 0.1130 0.1351 REMARK 3 3 3.2400 - 2.8300 1.00 4740 266 0.1183 0.1436 REMARK 3 4 2.8300 - 2.5700 1.00 4732 254 0.1129 0.1461 REMARK 3 5 2.5700 - 2.3900 1.00 4757 249 0.1073 0.1579 REMARK 3 6 2.3900 - 2.2500 0.99 4723 266 0.1020 0.1329 REMARK 3 7 2.2500 - 2.1400 0.99 4668 245 0.0901 0.1315 REMARK 3 8 2.1400 - 2.0400 0.99 4660 261 0.0954 0.1418 REMARK 3 9 2.0400 - 1.9600 0.99 4681 266 0.0991 0.1422 REMARK 3 10 1.9600 - 1.9000 0.99 4714 227 0.1037 0.1478 REMARK 3 11 1.9000 - 1.8400 0.99 4680 236 0.1027 0.1370 REMARK 3 12 1.8400 - 1.7800 0.99 4727 239 0.1016 0.1482 REMARK 3 13 1.7800 - 1.7400 0.99 4730 211 0.1014 0.1399 REMARK 3 14 1.7400 - 1.7000 0.99 4728 220 0.1062 0.1575 REMARK 3 15 1.7000 - 1.6600 0.99 4694 242 0.1084 0.1710 REMARK 3 16 1.6600 - 1.6200 0.99 4655 254 0.1106 0.1439 REMARK 3 17 1.6200 - 1.5900 0.98 4627 250 0.1130 0.1588 REMARK 3 18 1.5900 - 1.5600 0.98 4598 272 0.1167 0.1851 REMARK 3 19 1.5600 - 1.5300 0.98 4663 230 0.1208 0.1716 REMARK 3 20 1.5300 - 1.5100 0.98 4587 240 0.1297 0.1777 REMARK 3 21 1.5100 - 1.4800 0.95 4427 236 0.1408 0.2012 REMARK 3 22 1.4800 - 1.4600 0.87 4148 239 0.1445 0.1928 REMARK 3 23 1.4600 - 1.4400 0.82 3840 192 0.1454 0.2140 REMARK 3 24 1.4400 - 1.4200 0.77 3665 169 0.1524 0.2115 REMARK 3 25 1.4200 - 1.4000 0.71 3374 175 0.1425 0.1998 REMARK 3 26 1.4000 - 1.3800 0.64 3012 158 0.1506 0.1944 REMARK 3 27 1.3800 - 1.3600 0.57 2681 139 0.1511 0.2225 REMARK 3 28 1.3600 - 1.3500 0.49 2303 117 0.1626 0.2563 REMARK 3 29 1.3500 - 1.3300 0.32 1523 85 0.1842 0.2586 REMARK 3 30 1.3300 - 1.3100 0.12 552 37 0.2169 0.2581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.108 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6055 REMARK 3 ANGLE : 1.269 8457 REMARK 3 CHIRALITY : 0.090 924 REMARK 3 PLANARITY : 0.014 1050 REMARK 3 DIHEDRAL : 20.653 2440 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292137206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS BUILT=20220220 REMARK 200 DATA SCALING SOFTWARE : STARANISO SERVER RELEASE V3.351 REMARK 200 25-OCT-2023 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 70.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 35.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: B11 PROPLEX (MOLECULAR DIMENSIONS); REMARK 280 0.1 M HEPES PH 7.0, 15 % (W/V) PEG 4000; 18 MG/ML THDF (50 MM REMARK 280 HEPES PH 7.0, 20 MM NACL, 1 MM DTT), 1:1800 (MASS RATIO) REMARK 280 ELASTASE ADDED; 300 NL PROTEIN + 300 NL RESERVOIR, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.68500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 VAL B 8 REMARK 465 PRO B 167 REMARK 465 SER B 168 REMARK 465 GLU B 169 REMARK 465 SER B 170 REMARK 465 ALA B 171 REMARK 465 ARG B 172 REMARK 465 GLN B 173 REMARK 465 GLY B 174 REMARK 465 SER B 175 REMARK 465 GLU B 176 REMARK 465 ALA B 177 REMARK 465 ALA B 178 REMARK 465 PRO B 179 REMARK 465 ARG B 180 REMARK 465 GLY B 181 REMARK 465 SER B 182 REMARK 465 GLU B 183 REMARK 465 PRO B 184 REMARK 465 ALA B 185 REMARK 465 TYR B 186 REMARK 465 GLY B 187 REMARK 465 ALA B 188 REMARK 465 ARG B 189 REMARK 465 SER B 190 REMARK 465 SER B 191 REMARK 465 ARG B 192 REMARK 465 GLY B 193 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 169 REMARK 465 SER A 170 REMARK 465 ALA A 171 REMARK 465 ARG A 172 REMARK 465 GLN A 173 REMARK 465 GLY A 174 REMARK 465 SER A 175 REMARK 465 GLU A 176 REMARK 465 ALA A 177 REMARK 465 ALA A 178 REMARK 465 PRO A 179 REMARK 465 ARG A 180 REMARK 465 GLY A 181 REMARK 465 SER A 182 REMARK 465 GLU A 183 REMARK 465 PRO A 184 REMARK 465 ALA A 185 REMARK 465 TYR A 186 REMARK 465 GLY A 187 REMARK 465 ALA A 188 REMARK 465 ARG A 189 REMARK 465 SER A 190 REMARK 465 SER A 191 REMARK 465 ARG A 192 REMARK 465 GLY A 193 REMARK 465 GLY C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 ALA C 4 REMARK 465 ALA C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 7 REMARK 465 VAL C 8 REMARK 465 GLU C 169 REMARK 465 SER C 170 REMARK 465 ALA C 171 REMARK 465 ARG C 172 REMARK 465 GLN C 173 REMARK 465 GLY C 174 REMARK 465 SER C 175 REMARK 465 GLU C 176 REMARK 465 ALA C 177 REMARK 465 ALA C 178 REMARK 465 PRO C 179 REMARK 465 ARG C 180 REMARK 465 GLY C 181 REMARK 465 SER C 182 REMARK 465 GLU C 183 REMARK 465 PRO C 184 REMARK 465 ALA C 185 REMARK 465 TYR C 186 REMARK 465 GLY C 187 REMARK 465 ALA C 188 REMARK 465 ARG C 189 REMARK 465 SER C 190 REMARK 465 SER C 191 REMARK 465 ARG C 192 REMARK 465 GLY C 193 REMARK 465 GLY D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 3 REMARK 465 ALA D 4 REMARK 465 ALA D 5 REMARK 465 GLY D 6 REMARK 465 GLY D 7 REMARK 465 VAL D 8 REMARK 465 SER D 168 REMARK 465 GLU D 169 REMARK 465 SER D 170 REMARK 465 ALA D 171 REMARK 465 ARG D 172 REMARK 465 GLN D 173 REMARK 465 GLY D 174 REMARK 465 SER D 175 REMARK 465 GLU D 176 REMARK 465 ALA D 177 REMARK 465 ALA D 178 REMARK 465 PRO D 179 REMARK 465 ARG D 180 REMARK 465 GLY D 181 REMARK 465 SER D 182 REMARK 465 GLU D 183 REMARK 465 PRO D 184 REMARK 465 ALA D 185 REMARK 465 TYR D 186 REMARK 465 GLY D 187 REMARK 465 ALA D 188 REMARK 465 ARG D 189 REMARK 465 SER D 190 REMARK 465 SER D 191 REMARK 465 ARG D 192 REMARK 465 GLY D 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG B 74 OD1 ASP D 68 1554 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 108 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 45 49.51 -95.47 REMARK 500 SER C 45 46.59 -96.78 REMARK 500 SER D 31 -168.06 -160.58 REMARK 500 SER D 45 55.97 -94.53 REMARK 500 ARG D 159 33.65 72.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 61 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 468 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 498 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH D 450 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH D 451 DISTANCE = 6.71 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9FD4 RELATED DB: PDB REMARK 900 STRUCTURE IN DIFFERENT CRYSTAL FORM WITH TWO FADS REMARK 900 RELATED ID: 9FD6 RELATED DB: PDB REMARK 900 STRUCTURE IN DIFFERENT CRYSTAL FORM WITH NAD AND FAD DBREF1 9FD5 B 3 193 UNP A0A1B1V585_STRAO DBREF2 9FD5 B A0A1B1V585 3 193 DBREF1 9FD5 A 3 193 UNP A0A1B1V585_STRAO DBREF2 9FD5 A A0A1B1V585 3 193 DBREF1 9FD5 C 3 193 UNP A0A1B1V585_STRAO DBREF2 9FD5 C A0A1B1V585 3 193 DBREF1 9FD5 D 3 193 UNP A0A1B1V585_STRAO DBREF2 9FD5 D A0A1B1V585 3 193 SEQADV 9FD5 GLY B -1 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 ALA B 0 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 MET B 1 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 ALA B 2 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 GLY A -1 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 ALA A 0 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 MET A 1 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 ALA A 2 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 GLY C -1 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 ALA C 0 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 MET C 1 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 ALA C 2 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 GLY D -1 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 ALA D 0 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 MET D 1 UNP A0A1B1V58 EXPRESSION TAG SEQADV 9FD5 ALA D 2 UNP A0A1B1V58 EXPRESSION TAG SEQRES 1 B 195 GLY ALA MET ALA GLY ALA ALA GLY GLY VAL THR THR GLU SEQRES 2 B 195 GLN GLN HIS TYR ARG ASP LEU MET SER ALA PHE PRO THR SEQRES 3 B 195 GLY ILE ALA VAL VAL THR SER LEU ASP ALA GLN GLY VAL SEQRES 4 B 195 PRO ARG GLY MET THR CYS SER SER VAL THR SER ALA THR SEQRES 5 B 195 LEU SER PRO PRO THR LEU LEU VAL CYS LEU ARG ASN GLY SEQRES 6 B 195 SER ALA THR LEU ASP ALA VAL SER ALA THR ARG GLY PHE SEQRES 7 B 195 ALA VAL ASN LEU LEU HIS ASP GLY GLY ARG HIS ALA ALA SEQRES 8 B 195 GLU VAL PHE SER GLY PRO ASP PRO ASN ARG PHE SER ARG SEQRES 9 B 195 VAL GLN TRP LYS GLN CYS ARG SER GLY LEU PRO TRP LEU SEQRES 10 B 195 SER LYS ASP ALA PHE ALA VAL ALA GLU CYS ARG VAL SER SEQRES 11 B 195 GLY THR GLN GLU VAL GLY ASP HIS THR VAL VAL PHE GLY SEQRES 12 B 195 GLU VAL ALA ARG ILE ALA GLN THR ASP GLY THR PRO LEU SEQRES 13 B 195 LEU TYR GLY LEU ARG SER PHE ALA ALA TRP PRO LEU PRO SEQRES 14 B 195 SER GLU SER ALA ARG GLN GLY SER GLU ALA ALA PRO ARG SEQRES 15 B 195 GLY SER GLU PRO ALA TYR GLY ALA ARG SER SER ARG GLY SEQRES 1 A 195 GLY ALA MET ALA GLY ALA ALA GLY GLY VAL THR THR GLU SEQRES 2 A 195 GLN GLN HIS TYR ARG ASP LEU MET SER ALA PHE PRO THR SEQRES 3 A 195 GLY ILE ALA VAL VAL THR SER LEU ASP ALA GLN GLY VAL SEQRES 4 A 195 PRO ARG GLY MET THR CYS SER SER VAL THR SER ALA THR SEQRES 5 A 195 LEU SER PRO PRO THR LEU LEU VAL CYS LEU ARG ASN GLY SEQRES 6 A 195 SER ALA THR LEU ASP ALA VAL SER ALA THR ARG GLY PHE SEQRES 7 A 195 ALA VAL ASN LEU LEU HIS ASP GLY GLY ARG HIS ALA ALA SEQRES 8 A 195 GLU VAL PHE SER GLY PRO ASP PRO ASN ARG PHE SER ARG SEQRES 9 A 195 VAL GLN TRP LYS GLN CYS ARG SER GLY LEU PRO TRP LEU SEQRES 10 A 195 SER LYS ASP ALA PHE ALA VAL ALA GLU CYS ARG VAL SER SEQRES 11 A 195 GLY THR GLN GLU VAL GLY ASP HIS THR VAL VAL PHE GLY SEQRES 12 A 195 GLU VAL ALA ARG ILE ALA GLN THR ASP GLY THR PRO LEU SEQRES 13 A 195 LEU TYR GLY LEU ARG SER PHE ALA ALA TRP PRO LEU PRO SEQRES 14 A 195 SER GLU SER ALA ARG GLN GLY SER GLU ALA ALA PRO ARG SEQRES 15 A 195 GLY SER GLU PRO ALA TYR GLY ALA ARG SER SER ARG GLY SEQRES 1 C 195 GLY ALA MET ALA GLY ALA ALA GLY GLY VAL THR THR GLU SEQRES 2 C 195 GLN GLN HIS TYR ARG ASP LEU MET SER ALA PHE PRO THR SEQRES 3 C 195 GLY ILE ALA VAL VAL THR SER LEU ASP ALA GLN GLY VAL SEQRES 4 C 195 PRO ARG GLY MET THR CYS SER SER VAL THR SER ALA THR SEQRES 5 C 195 LEU SER PRO PRO THR LEU LEU VAL CYS LEU ARG ASN GLY SEQRES 6 C 195 SER ALA THR LEU ASP ALA VAL SER ALA THR ARG GLY PHE SEQRES 7 C 195 ALA VAL ASN LEU LEU HIS ASP GLY GLY ARG HIS ALA ALA SEQRES 8 C 195 GLU VAL PHE SER GLY PRO ASP PRO ASN ARG PHE SER ARG SEQRES 9 C 195 VAL GLN TRP LYS GLN CYS ARG SER GLY LEU PRO TRP LEU SEQRES 10 C 195 SER LYS ASP ALA PHE ALA VAL ALA GLU CYS ARG VAL SER SEQRES 11 C 195 GLY THR GLN GLU VAL GLY ASP HIS THR VAL VAL PHE GLY SEQRES 12 C 195 GLU VAL ALA ARG ILE ALA GLN THR ASP GLY THR PRO LEU SEQRES 13 C 195 LEU TYR GLY LEU ARG SER PHE ALA ALA TRP PRO LEU PRO SEQRES 14 C 195 SER GLU SER ALA ARG GLN GLY SER GLU ALA ALA PRO ARG SEQRES 15 C 195 GLY SER GLU PRO ALA TYR GLY ALA ARG SER SER ARG GLY SEQRES 1 D 195 GLY ALA MET ALA GLY ALA ALA GLY GLY VAL THR THR GLU SEQRES 2 D 195 GLN GLN HIS TYR ARG ASP LEU MET SER ALA PHE PRO THR SEQRES 3 D 195 GLY ILE ALA VAL VAL THR SER LEU ASP ALA GLN GLY VAL SEQRES 4 D 195 PRO ARG GLY MET THR CYS SER SER VAL THR SER ALA THR SEQRES 5 D 195 LEU SER PRO PRO THR LEU LEU VAL CYS LEU ARG ASN GLY SEQRES 6 D 195 SER ALA THR LEU ASP ALA VAL SER ALA THR ARG GLY PHE SEQRES 7 D 195 ALA VAL ASN LEU LEU HIS ASP GLY GLY ARG HIS ALA ALA SEQRES 8 D 195 GLU VAL PHE SER GLY PRO ASP PRO ASN ARG PHE SER ARG SEQRES 9 D 195 VAL GLN TRP LYS GLN CYS ARG SER GLY LEU PRO TRP LEU SEQRES 10 D 195 SER LYS ASP ALA PHE ALA VAL ALA GLU CYS ARG VAL SER SEQRES 11 D 195 GLY THR GLN GLU VAL GLY ASP HIS THR VAL VAL PHE GLY SEQRES 12 D 195 GLU VAL ALA ARG ILE ALA GLN THR ASP GLY THR PRO LEU SEQRES 13 D 195 LEU TYR GLY LEU ARG SER PHE ALA ALA TRP PRO LEU PRO SEQRES 14 D 195 SER GLU SER ALA ARG GLN GLY SER GLU ALA ALA PRO ARG SEQRES 15 D 195 GLY SER GLU PRO ALA TYR GLY ALA ARG SER SER ARG GLY HET FAD B 201 83 HET FAD B 202 84 HET FAD A 201 83 HET FAD A 202 84 HET FAD C 201 83 HET FAD C 202 84 HET FAD D 201 166 HET FAD D 202 84 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 5 FAD 8(C27 H33 N9 O15 P2) FORMUL 13 HOH *680(H2 O) HELIX 1 AA1 THR B 9 SER B 20 1 12 HELIX 2 AA2 SER B 64 ARG B 74 1 11 HELIX 3 AA3 GLY B 85 PHE B 92 1 8 HELIX 4 AA4 ASN B 98 VAL B 103 5 6 HELIX 5 AA5 GLU A 11 SER A 20 1 10 HELIX 6 AA6 SER A 64 ARG A 74 1 11 HELIX 7 AA7 GLY A 85 PHE A 92 1 8 HELIX 8 AA8 ASN A 98 ARG A 102 5 5 HELIX 9 AA9 THR C 10 ALA C 21 1 12 HELIX 10 AB1 SER C 64 ARG C 74 1 11 HELIX 11 AB2 GLY C 85 PHE C 92 1 8 HELIX 12 AB3 ASN C 98 ARG C 102 5 5 HELIX 13 AB4 THR D 10 ALA D 21 1 12 HELIX 14 AB5 SER D 64 ARG D 74 1 11 HELIX 15 AB6 GLY D 85 PHE D 92 1 8 HELIX 16 AB7 ASN D 98 VAL D 103 5 6 SHEET 1 AA1 3 THR B 24 GLY B 25 0 SHEET 2 AA1 3 LEU B 154 GLY B 157 -1 O TYR B 156 N THR B 24 SHEET 3 AA1 3 SER B 160 ALA B 163 -1 O ALA B 162 N LEU B 155 SHEET 1 AA2 7 PRO B 38 CYS B 43 0 SHEET 2 AA2 7 ALA B 27 LEU B 32 -1 N ALA B 27 O CYS B 43 SHEET 3 AA2 7 GLY B 75 LEU B 81 -1 O ALA B 77 N THR B 30 SHEET 4 AA2 7 ALA B 119 VAL B 133 -1 O CYS B 125 N PHE B 76 SHEET 5 AA2 7 HIS B 136 GLN B 148 -1 O VAL B 138 N GLN B 131 SHEET 6 AA2 7 THR B 55 ARG B 61 -1 N VAL B 58 O VAL B 139 SHEET 7 AA2 7 THR B 47 THR B 50 -1 N THR B 50 O THR B 55 SHEET 1 AA3 2 LYS B 106 GLN B 107 0 SHEET 2 AA3 2 PRO B 113 TRP B 114 -1 O TRP B 114 N LYS B 106 SHEET 1 AA4 3 THR A 24 GLY A 25 0 SHEET 2 AA4 3 LEU A 154 GLY A 157 -1 O TYR A 156 N THR A 24 SHEET 3 AA4 3 SER A 160 ALA A 163 -1 O ALA A 162 N LEU A 155 SHEET 1 AA5 7 PRO A 38 CYS A 43 0 SHEET 2 AA5 7 ALA A 27 LEU A 32 -1 N ALA A 27 O CYS A 43 SHEET 3 AA5 7 GLY A 75 LEU A 81 -1 O ASN A 79 N VAL A 28 SHEET 4 AA5 7 ALA A 119 VAL A 133 -1 O CYS A 125 N PHE A 76 SHEET 5 AA5 7 HIS A 136 GLN A 148 -1 O ALA A 144 N GLU A 124 SHEET 6 AA5 7 THR A 55 ARG A 61 -1 N VAL A 58 O VAL A 139 SHEET 7 AA5 7 VAL A 46 THR A 50 -1 N ALA A 49 O THR A 55 SHEET 1 AA6 2 LYS A 106 GLN A 107 0 SHEET 2 AA6 2 PRO A 113 TRP A 114 -1 O TRP A 114 N LYS A 106 SHEET 1 AA7 3 THR C 24 GLY C 25 0 SHEET 2 AA7 3 LEU C 154 GLY C 157 -1 O TYR C 156 N THR C 24 SHEET 3 AA7 3 SER C 160 ALA C 163 -1 O ALA C 162 N LEU C 155 SHEET 1 AA8 7 PRO C 38 CYS C 43 0 SHEET 2 AA8 7 ALA C 27 LEU C 32 -1 N SER C 31 O ARG C 39 SHEET 3 AA8 7 GLY C 75 LEU C 81 -1 O ALA C 77 N THR C 30 SHEET 4 AA8 7 ALA C 119 VAL C 133 -1 O CYS C 125 N PHE C 76 SHEET 5 AA8 7 HIS C 136 GLN C 148 -1 O ALA C 144 N GLU C 124 SHEET 6 AA8 7 THR C 55 ARG C 61 -1 N LEU C 56 O GLY C 141 SHEET 7 AA8 7 THR C 47 THR C 50 -1 N THR C 50 O THR C 55 SHEET 1 AA9 2 LYS C 106 GLN C 107 0 SHEET 2 AA9 2 PRO C 113 TRP C 114 -1 O TRP C 114 N LYS C 106 SHEET 1 AB1 7 PRO D 38 CYS D 43 0 SHEET 2 AB1 7 ALA D 27 LEU D 32 -1 N ALA D 27 O CYS D 43 SHEET 3 AB1 7 GLY D 75 LEU D 81 -1 O ALA D 77 N THR D 30 SHEET 4 AB1 7 ALA D 119 VAL D 133 -1 O CYS D 125 N PHE D 76 SHEET 5 AB1 7 HIS D 136 GLN D 148 -1 O ALA D 144 N GLU D 124 SHEET 6 AB1 7 THR D 55 ARG D 61 -1 N VAL D 58 O VAL D 139 SHEET 7 AB1 7 VAL D 46 THR D 50 -1 N THR D 50 O THR D 55 SHEET 1 AB2 2 LYS D 106 GLN D 107 0 SHEET 2 AB2 2 PRO D 113 TRP D 114 -1 O TRP D 114 N LYS D 106 SHEET 1 AB3 2 LEU D 154 GLY D 157 0 SHEET 2 AB3 2 SER D 160 ALA D 163 -1 O ALA D 162 N LEU D 155 CISPEP 1 SER B 52 PRO B 53 0 -9.10 CISPEP 2 SER A 52 PRO A 53 0 -8.14 CISPEP 3 SER C 52 PRO C 53 0 -5.24 CISPEP 4 SER C 52 PRO C 53 0 -9.84 CISPEP 5 SER D 52 PRO D 53 0 -7.21 CISPEP 6 SER D 52 PRO D 53 0 -7.13 CRYST1 59.150 77.370 75.490 90.00 111.83 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016906 0.000000 0.006771 0.00000 SCALE2 0.000000 0.012925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014270 0.00000