HEADER MEMBRANE PROTEIN 17-MAY-24 9FDG TITLE SOLUTION STRUCTURE OF A DE NOVO DESIGNED 12-STRANDED TRANSMEMBRANE TITLE 2 BETA-BARREL IN LDAO MICELLES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TMB12SOL9_3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STRUCTURE FROM CYANA 3.98.15, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.MUENTENER,S.HILLER REVDAT 1 16-OCT-24 9FDG 0 JRNL AUTH S.BERHANU,S.MAJUMDER,T.MUENTENER,J.WHITEHOUSE,C.BERNER, JRNL AUTH 2 A.K.BERA,A.KANG,B.LIANG,N.KHAN,B.SANKARAN,L.K.TAMM, JRNL AUTH 3 D.J.BROCKWELL,S.HILLER,S.E.RADFORD,D.BAKER,A.A.VOROBIEVA JRNL TITL SCULPTING CONDUCTING NANOPORE SIZE AND SHAPE THROUGH DE NOVO JRNL TITL 2 PROTEIN DESIGN. JRNL REF SCIENCE V. 385 282 2024 JRNL REFN ESSN 1095-9203 JRNL PMID 39024453 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292137819. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 600 UM [U-13C; U-15N; U-2H] REMARK 210 TMB12SOL9_3, 5 % [U-2H] D2O, 20 REMARK 210 MM SODIUM PHOSPHATE, 1 MM EDTA, REMARK 210 15 MM LDAO, 95% H2O/5% D2O; 600 REMARK 210 UM [U-15N; U-2H; 99% 1HD-ILE,LEU; REMARK 210 99% 1HG-VAL; 99% ALA; 99% MET] REMARK 210 TMB12SOL9_3, 5 % [U-2H] D2O, 20 REMARK 210 MM SODIUM PHOSPHATE, 1 MM EDTA, REMARK 210 15 MM LDAO, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N TROSY; 3D HNCACB; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS ASSIGN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 47 40.37 -95.06 REMARK 500 1 PHE A 77 -64.59 -99.21 REMARK 500 1 PRO A 91 -162.33 -69.72 REMARK 500 1 TYR A 119 -179.34 -170.63 REMARK 500 1 THR A 122 -61.43 -174.80 REMARK 500 1 ASP A 136 -70.76 -77.74 REMARK 500 2 PRO A 4 -171.14 -69.79 REMARK 500 2 ASN A 34 -39.72 -166.73 REMARK 500 2 VAL A 89 123.26 -177.96 REMARK 500 2 PRO A 91 54.60 -69.72 REMARK 500 2 ASN A 92 -166.45 175.81 REMARK 500 2 PRO A 97 98.44 -69.73 REMARK 500 3 ASN A 34 -72.18 -50.46 REMARK 500 3 ALA A 59 -70.31 -70.24 REMARK 500 3 ASP A 74 -71.33 -84.90 REMARK 500 3 ASN A 75 -178.39 -172.73 REMARK 500 3 PRO A 88 -175.07 -69.80 REMARK 500 3 LEU A 93 170.18 -50.82 REMARK 500 3 PRO A 97 94.33 -69.69 REMARK 500 3 THR A 122 -61.38 -178.82 REMARK 500 3 PRO A 123 -168.67 -69.77 REMARK 500 3 ASP A 124 38.04 -93.90 REMARK 500 3 ASN A 167 -169.73 -113.79 REMARK 500 3 GLU A 168 147.31 -175.54 REMARK 500 4 LYS A 3 71.96 32.11 REMARK 500 4 GLU A 40 -160.88 171.07 REMARK 500 4 ASN A 49 84.49 -175.89 REMARK 500 4 ASN A 75 47.41 -96.32 REMARK 500 4 LEU A 93 170.60 -51.45 REMARK 500 4 ASN A 105 45.16 -92.56 REMARK 500 4 SER A 106 -55.05 -130.02 REMARK 500 4 SER A 107 -75.74 -110.05 REMARK 500 4 PRO A 123 -166.09 -69.75 REMARK 500 4 SER A 165 129.69 67.47 REMARK 500 4 ASN A 167 50.51 -157.12 REMARK 500 4 SER A 178 -64.85 -90.85 REMARK 500 5 LEU A 35 106.97 -59.56 REMARK 500 5 SER A 46 -74.81 -91.99 REMARK 500 5 SER A 47 -75.06 -75.41 REMARK 500 5 LEU A 48 174.54 -54.56 REMARK 500 5 ASP A 74 -169.32 -178.01 REMARK 500 5 ASN A 75 -174.43 -58.72 REMARK 500 5 THR A 76 93.35 -61.99 REMARK 500 5 ASP A 90 167.55 -47.89 REMARK 500 5 ASP A 124 -61.75 -95.37 REMARK 500 5 ASN A 137 179.03 -59.11 REMARK 500 5 GLU A 146 -159.97 169.84 REMARK 500 5 PRO A 151 -86.40 -69.84 REMARK 500 6 PHE A 51 136.53 -173.59 REMARK 500 6 LYS A 52 -148.96 173.11 REMARK 500 REMARK 500 THIS ENTRY HAS 289 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52384 RELATED DB: BMRB DBREF 9FDG A 1 179 PDB 9FDG 9FDG 1 179 SEQRES 1 A 179 GLN ASP LYS PRO GLY SER ALA LYS ALA GLY GLY TRP THR SEQRES 2 A 179 THR TYR ASN THR ASP ASN THR PHE LYS GLY GLY SER TYR SEQRES 3 A 179 ALA LYS TYR VAL LEU SER PRO ASN LEU ALA LEU LYS GLY SEQRES 4 A 179 GLU TYR GLU TRP ASN ASN SER SER LEU ASN SER PHE LYS SEQRES 5 A 179 ALA GLY ALA GLU TYR VAL ALA THR PRO TYR LEU LYS THR SEQRES 6 A 179 GLU VAL MET THR GLU TYR ASN THR ASP ASN THR PHE ARG SEQRES 7 A 179 VAL THR VAL VAL THR GLU GLY ARG TYR PRO VAL ASP PRO SEQRES 8 A 179 ASN LEU GLU LEU PHE PRO GLY GLY TRP TYR THR TRP ASN SEQRES 9 A 179 ASN SER SER LEU ASN LYS GLY ALA PRO TYR THR ARG ALA SEQRES 10 A 179 GLU TYR LYS LEU THR PRO ASP LEU LYS LEU LEU SER GLN SEQRES 11 A 179 VAL VAL TYR ASN THR ASP ASN THR PHE LYS PHE ASP THR SEQRES 12 A 179 GLY LEU GLU TYR LYS LEU SER PRO ASN LEU LYS VAL LYS SEQRES 13 A 179 PHE GLU TYR GLY TRP ASN ASN SER SER LEU ASN GLU PHE SEQRES 14 A 179 THR VAL GLN PHE GLU TYR ASP LEU SER SER SHEET 1 AA113 ALA A 7 ASN A 16 0 SHEET 2 AA113 LYS A 22 TYR A 29 -1 O TYR A 26 N GLY A 10 SHEET 3 AA113 LEU A 35 ASN A 44 -1 O TRP A 43 N GLY A 23 SHEET 4 AA113 SER A 50 TYR A 57 -1 O LYS A 52 N GLU A 40 SHEET 5 AA113 LEU A 63 TYR A 71 -1 O THR A 69 N ALA A 53 SHEET 6 AA113 ARG A 78 GLY A 85 -1 O GLU A 84 N LYS A 64 SHEET 7 AA113 GLU A 94 TRP A 103 -1 O TRP A 103 N VAL A 79 SHEET 8 AA113 LYS A 110 TYR A 119 -1 O ARG A 116 N PHE A 96 SHEET 9 AA113 LYS A 126 TYR A 133 -1 O SER A 129 N ALA A 117 SHEET 10 AA113 THR A 138 TYR A 147 -1 O PHE A 139 N VAL A 132 SHEET 11 AA113 LYS A 154 TRP A 161 -1 O VAL A 155 N TYR A 147 SHEET 12 AA113 GLU A 168 ASP A 176 -1 O THR A 170 N GLU A 158 SHEET 13 AA113 ALA A 7 ASN A 16 -1 N GLY A 11 O PHE A 173 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 2804 SER A 179 ENDMDL MODEL 2 TER 2804 SER A 179 ENDMDL MODEL 3 TER 2804 SER A 179 ENDMDL MODEL 4 TER 2804 SER A 179 ENDMDL MODEL 5 TER 2804 SER A 179 ENDMDL MODEL 6 TER 2804 SER A 179 ENDMDL MODEL 7 TER 2804 SER A 179 ENDMDL MODEL 8 TER 2804 SER A 179 ENDMDL MODEL 9 TER 2804 SER A 179 ENDMDL MODEL 10 TER 2804 SER A 179 ENDMDL MODEL 11 TER 2804 SER A 179 ENDMDL MODEL 12 TER 2804 SER A 179 ENDMDL MODEL 13 TER 2804 SER A 179 ENDMDL MODEL 14 TER 2804 SER A 179 ENDMDL MODEL 15 TER 2804 SER A 179 ENDMDL MODEL 16 TER 2804 SER A 179 ENDMDL MODEL 17 TER 2804 SER A 179 ENDMDL MODEL 18 TER 2804 SER A 179 ENDMDL MODEL 19 TER 2804 SER A 179 ENDMDL MODEL 20 TER 2804 SER A 179 ENDMDL MASTER 148 0 0 0 13 0 0 6 1442 1 0 14 END