data_9FE1 # _entry.id 9FE1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9FE1 pdb_00009fe1 10.2210/pdb9fe1/pdb WWPDB D_1292138711 ? ? EMDB EMD-50336 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-05-28 ? 2 'EM metadata' 1 0 2025-05-28 ? 3 'Additional map' 1 0 2025-05-28 1 4 'Additional map' 1 0 2025-05-28 2 5 FSC 1 0 2025-05-28 ? 6 'Half map' 1 0 2025-05-28 1 7 'Half map' 1 0 2025-05-28 2 8 Image 1 0 2025-05-28 ? 9 Mask 1 0 2025-05-28 1 10 'Primary map' 1 0 2025-05-28 ? 11 'Structure model' 1 1 2025-12-10 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 'Additional map' repository 'Initial release' ? ? 5 5 FSC repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 'Half map' repository 'Initial release' ? ? 8 8 Image repository 'Initial release' ? ? 9 9 Mask repository 'Initial release' ? ? 10 10 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 11 'Structure model' 'Data collection' 2 11 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 11 'Structure model' citation 2 11 'Structure model' citation_author 3 11 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 11 'Structure model' '_citation.country' 2 11 'Structure model' '_citation.journal_abbrev' 3 11 'Structure model' '_citation.journal_id_CSD' 4 11 'Structure model' '_citation.journal_id_ISSN' 5 11 'Structure model' '_citation.journal_volume' 6 11 'Structure model' '_citation.page_first' 7 11 'Structure model' '_citation.page_last' 8 11 'Structure model' '_citation.pdbx_database_id_DOI' 9 11 'Structure model' '_citation.pdbx_database_id_PubMed' 10 11 'Structure model' '_citation.title' 11 11 'Structure model' '_citation.year' 12 11 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9FE1 _pdbx_database_status.recvd_initial_deposition_date 2024-05-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Crystal structure of NY_1' 9EPA unspecified EMDB 'Cryo-EM structure of the ternary DARPin NY_1/HLA-A0201/NY-ESO1 complex.' EMD-50336 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email adnane.achour@scilifelab.se _pdbx_contact_author.name_first Adnane _pdbx_contact_author.name_last Achour _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0432-710X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Schulte, T.' 1 0000-0002-7322-8933 'Wallden, K.' 2 0000-0002-7391-1003 'Carroni, M.' 3 0000-0002-7697-6427 'Sandalova, T.' 4 0000-0002-7694-6420 'Walser, M.' 5 ? 'Mueller, S.' 6 ? 'Venetz, N.' 7 ? 'Achour, A.' 8 0000-0003-0432-710X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Iscience _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2589-0042 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 113926 _citation.page_last 113926 _citation.title 'Development of DARPin T cell engagers for specific targeting of tumor-associated HLA/peptide complexes.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.isci.2025.113926 _citation.pdbx_database_id_PubMed 41321628 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Venetz-Arenas, N.' 1 ? primary 'Schulte, T.' 2 ? primary 'Muller, S.' 3 ? primary 'Wallden, K.' 4 ? primary 'Fischer, S.' 5 ? primary 'Resink, T.' 6 ? primary 'Kadri, N.' 7 ? primary 'Paladino, M.' 8 ? primary 'Pina, N.' 9 ? primary 'Radom, F.' 10 ? primary 'Villemagne, D.' 11 ? primary 'Bruckmaier, S.' 12 ? primary 'Cornelius, A.' 13 ? primary 'Hospodarsch, T.' 14 ? primary 'Alici, E.' 15 ? primary 'Ljunggren, H.G.' 16 ? primary 'Chambers, B.J.' 17 ? primary 'Han, X.' 18 ? primary 'Sun, R.' 19 ? primary 'Carroni, M.' 20 ? primary 'Levitsky, V.' 21 ? primary 'Sandalova, T.' 22 ? primary 'Walser, M.' 23 ? primary 'Achour, A.' 24 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MHC class I antigen' 33541.047 1 ? ? ? ? 2 polymer man Beta-2-microglobulin 11879.356 1 ? ? 'UNP residues 21-119' ? 3 polymer syn 'Cancer/testis antigen 1' 1090.335 1 ? ? ? ? 4 polymer man 'DARPin NY_1' 18596.217 1 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Autoimmunogenic cancer/testis antigen NY-ESO-1,Cancer/testis antigen 6.1,CT6.1,L antigen family member 2,LAGE-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLG TLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAY LEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDG TFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEPGSGGSAWSHPQFEK ; ;MGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLG TLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAY LEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDG TFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEPGSGGSAWSHPQFEK ; A ? 2 'polypeptide(L)' no no ;MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM ; ;MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA CRVNHVTLSQPKIVKWDRDM ; B ? 3 'polypeptide(L)' no no SLLMWITQV SLLMWITQV C ? 4 'polypeptide(L)' no no ;MRGSHHHHHHENLYFQGSDLGKKLLQAARAGQLDEVRELLKAGADVNAKDLIGVTPLHLAAFSGHLEIVEVLLKASADVN AKDVSGRTPLHVAAKHGHLEIVEVLLKAGADVNAKDLIGFTPLHLAAQFGHLEIVEVLLKAGADVNAQDKSGKTPADLAA RAGHQDIAEVLQKAA ; ;MRGSHHHHHHENLYFQGSDLGKKLLQAARAGQLDEVRELLKAGADVNAKDLIGVTPLHLAAFSGHLEIVEVLLKASADVN AKDVSGRTPLHVAAKHGHLEIVEVLLKAGADVNAKDLIGFTPLHLAAQFGHLEIVEVLLKAGADVNAQDKSGKTPADLAA RAGHQDIAEVLQKAA ; D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 HIS n 1 5 SER n 1 6 MET n 1 7 ARG n 1 8 TYR n 1 9 PHE n 1 10 PHE n 1 11 THR n 1 12 SER n 1 13 VAL n 1 14 SER n 1 15 ARG n 1 16 PRO n 1 17 GLY n 1 18 ARG n 1 19 GLY n 1 20 GLU n 1 21 PRO n 1 22 ARG n 1 23 PHE n 1 24 ILE n 1 25 ALA n 1 26 VAL n 1 27 GLY n 1 28 TYR n 1 29 VAL n 1 30 ASP n 1 31 ASP n 1 32 THR n 1 33 GLN n 1 34 PHE n 1 35 VAL n 1 36 ARG n 1 37 PHE n 1 38 ASP n 1 39 SER n 1 40 ASP n 1 41 ALA n 1 42 ALA n 1 43 SER n 1 44 GLN n 1 45 ARG n 1 46 MET n 1 47 GLU n 1 48 PRO n 1 49 ARG n 1 50 ALA n 1 51 PRO n 1 52 TRP n 1 53 ILE n 1 54 GLU n 1 55 GLN n 1 56 GLU n 1 57 GLY n 1 58 PRO n 1 59 GLU n 1 60 TYR n 1 61 TRP n 1 62 ASP n 1 63 GLY n 1 64 GLU n 1 65 THR n 1 66 ARG n 1 67 LYS n 1 68 VAL n 1 69 LYS n 1 70 ALA n 1 71 HIS n 1 72 SER n 1 73 GLN n 1 74 THR n 1 75 HIS n 1 76 ARG n 1 77 VAL n 1 78 ASP n 1 79 LEU n 1 80 GLY n 1 81 THR n 1 82 LEU n 1 83 ARG n 1 84 GLY n 1 85 TYR n 1 86 TYR n 1 87 ASN n 1 88 GLN n 1 89 SER n 1 90 GLU n 1 91 ALA n 1 92 GLY n 1 93 SER n 1 94 HIS n 1 95 THR n 1 96 VAL n 1 97 GLN n 1 98 ARG n 1 99 MET n 1 100 TYR n 1 101 GLY n 1 102 CYS n 1 103 ASP n 1 104 VAL n 1 105 GLY n 1 106 SER n 1 107 ASP n 1 108 TRP n 1 109 ARG n 1 110 PHE n 1 111 LEU n 1 112 ARG n 1 113 GLY n 1 114 TYR n 1 115 HIS n 1 116 GLN n 1 117 TYR n 1 118 ALA n 1 119 TYR n 1 120 ASP n 1 121 GLY n 1 122 LYS n 1 123 ASP n 1 124 TYR n 1 125 ILE n 1 126 ALA n 1 127 LEU n 1 128 LYS n 1 129 GLU n 1 130 ASP n 1 131 LEU n 1 132 ARG n 1 133 SER n 1 134 TRP n 1 135 THR n 1 136 ALA n 1 137 ALA n 1 138 ASP n 1 139 MET n 1 140 ALA n 1 141 ALA n 1 142 GLN n 1 143 THR n 1 144 THR n 1 145 LYS n 1 146 HIS n 1 147 LYS n 1 148 TRP n 1 149 GLU n 1 150 ALA n 1 151 ALA n 1 152 HIS n 1 153 VAL n 1 154 ALA n 1 155 GLU n 1 156 GLN n 1 157 LEU n 1 158 ARG n 1 159 ALA n 1 160 TYR n 1 161 LEU n 1 162 GLU n 1 163 GLY n 1 164 THR n 1 165 CYS n 1 166 VAL n 1 167 GLU n 1 168 TRP n 1 169 LEU n 1 170 ARG n 1 171 ARG n 1 172 TYR n 1 173 LEU n 1 174 GLU n 1 175 ASN n 1 176 GLY n 1 177 LYS n 1 178 GLU n 1 179 THR n 1 180 LEU n 1 181 GLN n 1 182 ARG n 1 183 THR n 1 184 ASP n 1 185 ALA n 1 186 PRO n 1 187 LYS n 1 188 THR n 1 189 HIS n 1 190 MET n 1 191 THR n 1 192 HIS n 1 193 HIS n 1 194 ALA n 1 195 VAL n 1 196 SER n 1 197 ASP n 1 198 HIS n 1 199 GLU n 1 200 ALA n 1 201 THR n 1 202 LEU n 1 203 ARG n 1 204 CYS n 1 205 TRP n 1 206 ALA n 1 207 LEU n 1 208 SER n 1 209 PHE n 1 210 TYR n 1 211 PRO n 1 212 ALA n 1 213 GLU n 1 214 ILE n 1 215 THR n 1 216 LEU n 1 217 THR n 1 218 TRP n 1 219 GLN n 1 220 ARG n 1 221 ASP n 1 222 GLY n 1 223 GLU n 1 224 ASP n 1 225 GLN n 1 226 THR n 1 227 GLN n 1 228 ASP n 1 229 THR n 1 230 GLU n 1 231 LEU n 1 232 VAL n 1 233 GLU n 1 234 THR n 1 235 ARG n 1 236 PRO n 1 237 ALA n 1 238 GLY n 1 239 ASP n 1 240 GLY n 1 241 THR n 1 242 PHE n 1 243 GLN n 1 244 LYS n 1 245 TRP n 1 246 ALA n 1 247 ALA n 1 248 VAL n 1 249 VAL n 1 250 VAL n 1 251 PRO n 1 252 SER n 1 253 GLY n 1 254 GLN n 1 255 GLU n 1 256 GLN n 1 257 ARG n 1 258 TYR n 1 259 THR n 1 260 CYS n 1 261 HIS n 1 262 VAL n 1 263 GLN n 1 264 HIS n 1 265 GLU n 1 266 GLY n 1 267 LEU n 1 268 PRO n 1 269 LYS n 1 270 PRO n 1 271 LEU n 1 272 THR n 1 273 LEU n 1 274 ARG n 1 275 TRP n 1 276 GLU n 1 277 PRO n 1 278 GLY n 1 279 SER n 1 280 GLY n 1 281 GLY n 1 282 SER n 1 283 ALA n 1 284 TRP n 1 285 SER n 1 286 HIS n 1 287 PRO n 1 288 GLN n 1 289 PHE n 1 290 GLU n 1 291 LYS n 2 1 MET n 2 2 ILE n 2 3 GLN n 2 4 ARG n 2 5 THR n 2 6 PRO n 2 7 LYS n 2 8 ILE n 2 9 GLN n 2 10 VAL n 2 11 TYR n 2 12 SER n 2 13 ARG n 2 14 HIS n 2 15 PRO n 2 16 ALA n 2 17 GLU n 2 18 ASN n 2 19 GLY n 2 20 LYS n 2 21 SER n 2 22 ASN n 2 23 PHE n 2 24 LEU n 2 25 ASN n 2 26 CYS n 2 27 TYR n 2 28 VAL n 2 29 SER n 2 30 GLY n 2 31 PHE n 2 32 HIS n 2 33 PRO n 2 34 SER n 2 35 ASP n 2 36 ILE n 2 37 GLU n 2 38 VAL n 2 39 ASP n 2 40 LEU n 2 41 LEU n 2 42 LYS n 2 43 ASN n 2 44 GLY n 2 45 GLU n 2 46 ARG n 2 47 ILE n 2 48 GLU n 2 49 LYS n 2 50 VAL n 2 51 GLU n 2 52 HIS n 2 53 SER n 2 54 ASP n 2 55 LEU n 2 56 SER n 2 57 PHE n 2 58 SER n 2 59 LYS n 2 60 ASP n 2 61 TRP n 2 62 SER n 2 63 PHE n 2 64 TYR n 2 65 LEU n 2 66 LEU n 2 67 TYR n 2 68 TYR n 2 69 THR n 2 70 GLU n 2 71 PHE n 2 72 THR n 2 73 PRO n 2 74 THR n 2 75 GLU n 2 76 LYS n 2 77 ASP n 2 78 GLU n 2 79 TYR n 2 80 ALA n 2 81 CYS n 2 82 ARG n 2 83 VAL n 2 84 ASN n 2 85 HIS n 2 86 VAL n 2 87 THR n 2 88 LEU n 2 89 SER n 2 90 GLN n 2 91 PRO n 2 92 LYS n 2 93 ILE n 2 94 VAL n 2 95 LYS n 2 96 TRP n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 MET n 3 1 SER n 3 2 LEU n 3 3 LEU n 3 4 MET n 3 5 TRP n 3 6 ILE n 3 7 THR n 3 8 GLN n 3 9 VAL n 4 1 MET n 4 2 ARG n 4 3 GLY n 4 4 SER n 4 5 HIS n 4 6 HIS n 4 7 HIS n 4 8 HIS n 4 9 HIS n 4 10 HIS n 4 11 GLU n 4 12 ASN n 4 13 LEU n 4 14 TYR n 4 15 PHE n 4 16 GLN n 4 17 GLY n 4 18 SER n 4 19 ASP n 4 20 LEU n 4 21 GLY n 4 22 LYS n 4 23 LYS n 4 24 LEU n 4 25 LEU n 4 26 GLN n 4 27 ALA n 4 28 ALA n 4 29 ARG n 4 30 ALA n 4 31 GLY n 4 32 GLN n 4 33 LEU n 4 34 ASP n 4 35 GLU n 4 36 VAL n 4 37 ARG n 4 38 GLU n 4 39 LEU n 4 40 LEU n 4 41 LYS n 4 42 ALA n 4 43 GLY n 4 44 ALA n 4 45 ASP n 4 46 VAL n 4 47 ASN n 4 48 ALA n 4 49 LYS n 4 50 ASP n 4 51 LEU n 4 52 ILE n 4 53 GLY n 4 54 VAL n 4 55 THR n 4 56 PRO n 4 57 LEU n 4 58 HIS n 4 59 LEU n 4 60 ALA n 4 61 ALA n 4 62 PHE n 4 63 SER n 4 64 GLY n 4 65 HIS n 4 66 LEU n 4 67 GLU n 4 68 ILE n 4 69 VAL n 4 70 GLU n 4 71 VAL n 4 72 LEU n 4 73 LEU n 4 74 LYS n 4 75 ALA n 4 76 SER n 4 77 ALA n 4 78 ASP n 4 79 VAL n 4 80 ASN n 4 81 ALA n 4 82 LYS n 4 83 ASP n 4 84 VAL n 4 85 SER n 4 86 GLY n 4 87 ARG n 4 88 THR n 4 89 PRO n 4 90 LEU n 4 91 HIS n 4 92 VAL n 4 93 ALA n 4 94 ALA n 4 95 LYS n 4 96 HIS n 4 97 GLY n 4 98 HIS n 4 99 LEU n 4 100 GLU n 4 101 ILE n 4 102 VAL n 4 103 GLU n 4 104 VAL n 4 105 LEU n 4 106 LEU n 4 107 LYS n 4 108 ALA n 4 109 GLY n 4 110 ALA n 4 111 ASP n 4 112 VAL n 4 113 ASN n 4 114 ALA n 4 115 LYS n 4 116 ASP n 4 117 LEU n 4 118 ILE n 4 119 GLY n 4 120 PHE n 4 121 THR n 4 122 PRO n 4 123 LEU n 4 124 HIS n 4 125 LEU n 4 126 ALA n 4 127 ALA n 4 128 GLN n 4 129 PHE n 4 130 GLY n 4 131 HIS n 4 132 LEU n 4 133 GLU n 4 134 ILE n 4 135 VAL n 4 136 GLU n 4 137 VAL n 4 138 LEU n 4 139 LEU n 4 140 LYS n 4 141 ALA n 4 142 GLY n 4 143 ALA n 4 144 ASP n 4 145 VAL n 4 146 ASN n 4 147 ALA n 4 148 GLN n 4 149 ASP n 4 150 LYS n 4 151 SER n 4 152 GLY n 4 153 LYS n 4 154 THR n 4 155 PRO n 4 156 ALA n 4 157 ASP n 4 158 LEU n 4 159 ALA n 4 160 ALA n 4 161 ARG n 4 162 ALA n 4 163 GLY n 4 164 HIS n 4 165 GLN n 4 166 ASP n 4 167 ILE n 4 168 ALA n 4 169 GLU n 4 170 VAL n 4 171 LEU n 4 172 GLN n 4 173 LYS n 4 174 ALA n 4 175 ALA n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 291 human ? HLA-A ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 100 human ? 'B2M, CDABP0092, HDCMA22P' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample 'Biological sequence' 1 175 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 SER 3 2 2 SER SER A . n A 1 4 HIS 4 3 3 HIS HIS A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 MET 6 5 5 MET MET A . n A 1 7 ARG 7 6 6 ARG ARG A . n A 1 8 TYR 8 7 7 TYR TYR A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 PHE 10 9 9 PHE PHE A . n A 1 11 THR 11 10 10 THR THR A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 VAL 13 12 12 VAL VAL A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 PRO 16 15 15 PRO PRO A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 PRO 21 20 20 PRO PRO A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 ILE 24 23 23 ILE ILE A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 THR 32 31 31 THR THR A . n A 1 33 GLN 33 32 32 GLN GLN A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 ARG 36 35 35 ARG ARG A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 SER 39 38 38 SER SER A . n A 1 40 ASP 40 39 39 ASP ASP A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 GLN 44 43 43 GLN GLN A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 MET 46 45 45 MET MET A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 PRO 48 47 47 PRO PRO A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 ALA 50 49 49 ALA ALA A . n A 1 51 PRO 51 50 50 PRO PRO A . n A 1 52 TRP 52 51 51 TRP TRP A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 GLN 55 54 54 GLN GLN A . n A 1 56 GLU 56 55 55 GLU GLU A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 GLU 59 58 58 GLU GLU A . n A 1 60 TYR 60 59 59 TYR TYR A . n A 1 61 TRP 61 60 60 TRP TRP A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 ARG 66 65 65 ARG ARG A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 VAL 68 67 67 VAL VAL A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 HIS 71 70 70 HIS HIS A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 GLN 73 72 72 GLN GLN A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 HIS 75 74 74 HIS HIS A . n A 1 76 ARG 76 75 75 ARG ARG A . n A 1 77 VAL 77 76 76 VAL VAL A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 ARG 83 82 82 ARG ARG A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 TYR 85 84 84 TYR TYR A . n A 1 86 TYR 86 85 85 TYR TYR A . n A 1 87 ASN 87 86 86 ASN ASN A . n A 1 88 GLN 88 87 87 GLN GLN A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 SER 93 92 92 SER SER A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 GLN 97 96 96 GLN GLN A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 MET 99 98 98 MET MET A . n A 1 100 TYR 100 99 99 TYR TYR A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 CYS 102 101 101 CYS CYS A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 SER 106 105 105 SER SER A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 TRP 108 107 107 TRP TRP A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 PHE 110 109 109 PHE PHE A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 ARG 112 111 111 ARG ARG A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 TYR 114 113 113 TYR TYR A . n A 1 115 HIS 115 114 114 HIS HIS A . n A 1 116 GLN 116 115 115 GLN GLN A . n A 1 117 TYR 117 116 116 TYR TYR A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 TYR 124 123 123 TYR TYR A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 ALA 126 125 125 ALA ALA A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 LYS 128 127 127 LYS LYS A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 ASP 130 129 129 ASP ASP A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 ARG 132 131 131 ARG ARG A . n A 1 133 SER 133 132 132 SER SER A . n A 1 134 TRP 134 133 133 TRP TRP A . n A 1 135 THR 135 134 134 THR THR A . n A 1 136 ALA 136 135 135 ALA ALA A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 ASP 138 137 137 ASP ASP A . n A 1 139 MET 139 138 138 MET MET A . n A 1 140 ALA 140 139 139 ALA ALA A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 GLN 142 141 141 GLN GLN A . n A 1 143 THR 143 142 142 THR THR A . n A 1 144 THR 144 143 143 THR THR A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 HIS 146 145 145 HIS HIS A . n A 1 147 LYS 147 146 146 LYS LYS A . n A 1 148 TRP 148 147 147 TRP TRP A . n A 1 149 GLU 149 148 148 GLU GLU A . n A 1 150 ALA 150 149 149 ALA ALA A . n A 1 151 ALA 151 150 150 ALA ALA A . n A 1 152 HIS 152 151 151 HIS HIS A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 ALA 154 153 153 ALA ALA A . n A 1 155 GLU 155 154 154 GLU GLU A . n A 1 156 GLN 156 155 155 GLN GLN A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 ARG 158 157 157 ARG ARG A . n A 1 159 ALA 159 158 158 ALA ALA A . n A 1 160 TYR 160 159 159 TYR TYR A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 GLU 162 161 161 GLU GLU A . n A 1 163 GLY 163 162 162 GLY GLY A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 CYS 165 164 164 CYS CYS A . n A 1 166 VAL 166 165 165 VAL VAL A . n A 1 167 GLU 167 166 166 GLU GLU A . n A 1 168 TRP 168 167 167 TRP TRP A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 ARG 170 169 169 ARG ARG A . n A 1 171 ARG 171 170 170 ARG ARG A . n A 1 172 TYR 172 171 171 TYR TYR A . n A 1 173 LEU 173 172 172 LEU LEU A . n A 1 174 GLU 174 173 173 GLU GLU A . n A 1 175 ASN 175 174 174 ASN ASN A . n A 1 176 GLY 176 175 175 GLY GLY A . n A 1 177 LYS 177 176 176 LYS LYS A . n A 1 178 GLU 178 177 177 GLU GLU A . n A 1 179 THR 179 178 178 THR THR A . n A 1 180 LEU 180 179 179 LEU LEU A . n A 1 181 GLN 181 180 180 GLN GLN A . n A 1 182 ARG 182 181 181 ARG ARG A . n A 1 183 THR 183 182 182 THR THR A . n A 1 184 ASP 184 183 183 ASP ASP A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 PRO 186 185 185 PRO PRO A . n A 1 187 LYS 187 186 186 LYS LYS A . n A 1 188 THR 188 187 187 THR THR A . n A 1 189 HIS 189 188 188 HIS HIS A . n A 1 190 MET 190 189 189 MET MET A . n A 1 191 THR 191 190 190 THR THR A . n A 1 192 HIS 192 191 191 HIS HIS A . n A 1 193 HIS 193 192 192 HIS HIS A . n A 1 194 ALA 194 193 193 ALA ALA A . n A 1 195 VAL 195 194 194 VAL VAL A . n A 1 196 SER 196 195 195 SER SER A . n A 1 197 ASP 197 196 196 ASP ASP A . n A 1 198 HIS 198 197 197 HIS HIS A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 THR 201 200 200 THR THR A . n A 1 202 LEU 202 201 201 LEU LEU A . n A 1 203 ARG 203 202 202 ARG ARG A . n A 1 204 CYS 204 203 203 CYS CYS A . n A 1 205 TRP 205 204 204 TRP TRP A . n A 1 206 ALA 206 205 205 ALA ALA A . n A 1 207 LEU 207 206 206 LEU LEU A . n A 1 208 SER 208 207 207 SER SER A . n A 1 209 PHE 209 208 208 PHE PHE A . n A 1 210 TYR 210 209 209 TYR TYR A . n A 1 211 PRO 211 210 210 PRO PRO A . n A 1 212 ALA 212 211 211 ALA ALA A . n A 1 213 GLU 213 212 212 GLU GLU A . n A 1 214 ILE 214 213 213 ILE ILE A . n A 1 215 THR 215 214 214 THR THR A . n A 1 216 LEU 216 215 215 LEU LEU A . n A 1 217 THR 217 216 216 THR THR A . n A 1 218 TRP 218 217 217 TRP TRP A . n A 1 219 GLN 219 218 218 GLN GLN A . n A 1 220 ARG 220 219 219 ARG ARG A . n A 1 221 ASP 221 220 220 ASP ASP A . n A 1 222 GLY 222 221 221 GLY GLY A . n A 1 223 GLU 223 222 222 GLU GLU A . n A 1 224 ASP 224 223 223 ASP ASP A . n A 1 225 GLN 225 224 224 GLN GLN A . n A 1 226 THR 226 225 225 THR THR A . n A 1 227 GLN 227 226 226 GLN GLN A . n A 1 228 ASP 228 227 227 ASP ASP A . n A 1 229 THR 229 228 228 THR THR A . n A 1 230 GLU 230 229 229 GLU GLU A . n A 1 231 LEU 231 230 230 LEU LEU A . n A 1 232 VAL 232 231 231 VAL VAL A . n A 1 233 GLU 233 232 232 GLU GLU A . n A 1 234 THR 234 233 233 THR THR A . n A 1 235 ARG 235 234 234 ARG ARG A . n A 1 236 PRO 236 235 235 PRO PRO A . n A 1 237 ALA 237 236 236 ALA ALA A . n A 1 238 GLY 238 237 237 GLY GLY A . n A 1 239 ASP 239 238 238 ASP ASP A . n A 1 240 GLY 240 239 239 GLY GLY A . n A 1 241 THR 241 240 240 THR THR A . n A 1 242 PHE 242 241 241 PHE PHE A . n A 1 243 GLN 243 242 242 GLN GLN A . n A 1 244 LYS 244 243 243 LYS LYS A . n A 1 245 TRP 245 244 244 TRP TRP A . n A 1 246 ALA 246 245 245 ALA ALA A . n A 1 247 ALA 247 246 246 ALA ALA A . n A 1 248 VAL 248 247 247 VAL VAL A . n A 1 249 VAL 249 248 248 VAL VAL A . n A 1 250 VAL 250 249 249 VAL VAL A . n A 1 251 PRO 251 250 250 PRO PRO A . n A 1 252 SER 252 251 251 SER SER A . n A 1 253 GLY 253 252 252 GLY GLY A . n A 1 254 GLN 254 253 253 GLN GLN A . n A 1 255 GLU 255 254 254 GLU GLU A . n A 1 256 GLN 256 255 255 GLN GLN A . n A 1 257 ARG 257 256 256 ARG ARG A . n A 1 258 TYR 258 257 257 TYR TYR A . n A 1 259 THR 259 258 258 THR THR A . n A 1 260 CYS 260 259 259 CYS CYS A . n A 1 261 HIS 261 260 260 HIS HIS A . n A 1 262 VAL 262 261 261 VAL VAL A . n A 1 263 GLN 263 262 262 GLN GLN A . n A 1 264 HIS 264 263 263 HIS HIS A . n A 1 265 GLU 265 264 264 GLU GLU A . n A 1 266 GLY 266 265 265 GLY GLY A . n A 1 267 LEU 267 266 266 LEU LEU A . n A 1 268 PRO 268 267 267 PRO PRO A . n A 1 269 LYS 269 268 268 LYS LYS A . n A 1 270 PRO 270 269 269 PRO PRO A . n A 1 271 LEU 271 270 270 LEU LEU A . n A 1 272 THR 272 271 271 THR THR A . n A 1 273 LEU 273 272 272 LEU LEU A . n A 1 274 ARG 274 273 273 ARG ARG A . n A 1 275 TRP 275 274 274 TRP TRP A . n A 1 276 GLU 276 275 ? ? ? A . n A 1 277 PRO 277 276 ? ? ? A . n A 1 278 GLY 278 277 ? ? ? A . n A 1 279 SER 279 278 ? ? ? A . n A 1 280 GLY 280 279 ? ? ? A . n A 1 281 GLY 281 280 ? ? ? A . n A 1 282 SER 282 281 ? ? ? A . n A 1 283 ALA 283 282 ? ? ? A . n A 1 284 TRP 284 283 ? ? ? A . n A 1 285 SER 285 284 ? ? ? A . n A 1 286 HIS 286 285 ? ? ? A . n A 1 287 PRO 287 286 ? ? ? A . n A 1 288 GLN 288 287 ? ? ? A . n A 1 289 PHE 289 288 ? ? ? A . n A 1 290 GLU 290 289 ? ? ? A . n A 1 291 LYS 291 290 ? ? ? A . n B 2 1 MET 1 0 0 MET MET B . n B 2 2 ILE 2 1 1 ILE ILE B . n B 2 3 GLN 3 2 2 GLN GLN B . n B 2 4 ARG 4 3 3 ARG ARG B . n B 2 5 THR 5 4 4 THR THR B . n B 2 6 PRO 6 5 5 PRO PRO B . n B 2 7 LYS 7 6 6 LYS LYS B . n B 2 8 ILE 8 7 7 ILE ILE B . n B 2 9 GLN 9 8 8 GLN GLN B . n B 2 10 VAL 10 9 9 VAL VAL B . n B 2 11 TYR 11 10 10 TYR TYR B . n B 2 12 SER 12 11 11 SER SER B . n B 2 13 ARG 13 12 12 ARG ARG B . n B 2 14 HIS 14 13 13 HIS HIS B . n B 2 15 PRO 15 14 14 PRO PRO B . n B 2 16 ALA 16 15 15 ALA ALA B . n B 2 17 GLU 17 16 16 GLU GLU B . n B 2 18 ASN 18 17 17 ASN ASN B . n B 2 19 GLY 19 18 18 GLY GLY B . n B 2 20 LYS 20 19 19 LYS LYS B . n B 2 21 SER 21 20 20 SER SER B . n B 2 22 ASN 22 21 21 ASN ASN B . n B 2 23 PHE 23 22 22 PHE PHE B . n B 2 24 LEU 24 23 23 LEU LEU B . n B 2 25 ASN 25 24 24 ASN ASN B . n B 2 26 CYS 26 25 25 CYS CYS B . n B 2 27 TYR 27 26 26 TYR TYR B . n B 2 28 VAL 28 27 27 VAL VAL B . n B 2 29 SER 29 28 28 SER SER B . n B 2 30 GLY 30 29 29 GLY GLY B . n B 2 31 PHE 31 30 30 PHE PHE B . n B 2 32 HIS 32 31 31 HIS HIS B . n B 2 33 PRO 33 32 32 PRO PRO B . n B 2 34 SER 34 33 33 SER SER B . n B 2 35 ASP 35 34 34 ASP ASP B . n B 2 36 ILE 36 35 35 ILE ILE B . n B 2 37 GLU 37 36 36 GLU GLU B . n B 2 38 VAL 38 37 37 VAL VAL B . n B 2 39 ASP 39 38 38 ASP ASP B . n B 2 40 LEU 40 39 39 LEU LEU B . n B 2 41 LEU 41 40 40 LEU LEU B . n B 2 42 LYS 42 41 41 LYS LYS B . n B 2 43 ASN 43 42 42 ASN ASN B . n B 2 44 GLY 44 43 43 GLY GLY B . n B 2 45 GLU 45 44 44 GLU GLU B . n B 2 46 ARG 46 45 45 ARG ARG B . n B 2 47 ILE 47 46 46 ILE ILE B . n B 2 48 GLU 48 47 47 GLU GLU B . n B 2 49 LYS 49 48 48 LYS LYS B . n B 2 50 VAL 50 49 49 VAL VAL B . n B 2 51 GLU 51 50 50 GLU GLU B . n B 2 52 HIS 52 51 51 HIS HIS B . n B 2 53 SER 53 52 52 SER SER B . n B 2 54 ASP 54 53 53 ASP ASP B . n B 2 55 LEU 55 54 54 LEU LEU B . n B 2 56 SER 56 55 55 SER SER B . n B 2 57 PHE 57 56 56 PHE PHE B . n B 2 58 SER 58 57 57 SER SER B . n B 2 59 LYS 59 58 58 LYS LYS B . n B 2 60 ASP 60 59 59 ASP ASP B . n B 2 61 TRP 61 60 60 TRP TRP B . n B 2 62 SER 62 61 61 SER SER B . n B 2 63 PHE 63 62 62 PHE PHE B . n B 2 64 TYR 64 63 63 TYR TYR B . n B 2 65 LEU 65 64 64 LEU LEU B . n B 2 66 LEU 66 65 65 LEU LEU B . n B 2 67 TYR 67 66 66 TYR TYR B . n B 2 68 TYR 68 67 67 TYR TYR B . n B 2 69 THR 69 68 68 THR THR B . n B 2 70 GLU 70 69 69 GLU GLU B . n B 2 71 PHE 71 70 70 PHE PHE B . n B 2 72 THR 72 71 71 THR THR B . n B 2 73 PRO 73 72 72 PRO PRO B . n B 2 74 THR 74 73 73 THR THR B . n B 2 75 GLU 75 74 74 GLU GLU B . n B 2 76 LYS 76 75 75 LYS LYS B . n B 2 77 ASP 77 76 76 ASP ASP B . n B 2 78 GLU 78 77 77 GLU GLU B . n B 2 79 TYR 79 78 78 TYR TYR B . n B 2 80 ALA 80 79 79 ALA ALA B . n B 2 81 CYS 81 80 80 CYS CYS B . n B 2 82 ARG 82 81 81 ARG ARG B . n B 2 83 VAL 83 82 82 VAL VAL B . n B 2 84 ASN 84 83 83 ASN ASN B . n B 2 85 HIS 85 84 84 HIS HIS B . n B 2 86 VAL 86 85 85 VAL VAL B . n B 2 87 THR 87 86 86 THR THR B . n B 2 88 LEU 88 87 87 LEU LEU B . n B 2 89 SER 89 88 88 SER SER B . n B 2 90 GLN 90 89 89 GLN GLN B . n B 2 91 PRO 91 90 90 PRO PRO B . n B 2 92 LYS 92 91 91 LYS LYS B . n B 2 93 ILE 93 92 92 ILE ILE B . n B 2 94 VAL 94 93 93 VAL VAL B . n B 2 95 LYS 95 94 94 LYS LYS B . n B 2 96 TRP 96 95 95 TRP TRP B . n B 2 97 ASP 97 96 96 ASP ASP B . n B 2 98 ARG 98 97 97 ARG ARG B . n B 2 99 ASP 99 98 98 ASP ASP B . n B 2 100 MET 100 99 ? ? ? B . n C 3 1 SER 1 1 1 SER SER C . n C 3 2 LEU 2 2 2 LEU LEU C . n C 3 3 LEU 3 3 3 LEU LEU C . n C 3 4 MET 4 4 4 MET MET C . n C 3 5 TRP 5 5 5 TRP TRP C . n C 3 6 ILE 6 6 6 ILE ILE C . n C 3 7 THR 7 7 7 THR THR C . n C 3 8 GLN 8 8 8 GLN GLN C . n C 3 9 VAL 9 9 9 VAL VAL C . n D 4 1 MET 1 -5 ? ? ? D . n D 4 2 ARG 2 -4 ? ? ? D . n D 4 3 GLY 3 -3 ? ? ? D . n D 4 4 SER 4 -2 ? ? ? D . n D 4 5 HIS 5 -1 ? ? ? D . n D 4 6 HIS 6 0 ? ? ? D . n D 4 7 HIS 7 1 ? ? ? D . n D 4 8 HIS 8 2 ? ? ? D . n D 4 9 HIS 9 3 ? ? ? D . n D 4 10 HIS 10 4 ? ? ? D . n D 4 11 GLU 11 5 ? ? ? D . n D 4 12 ASN 12 6 ? ? ? D . n D 4 13 LEU 13 7 ? ? ? D . n D 4 14 TYR 14 8 ? ? ? D . n D 4 15 PHE 15 9 ? ? ? D . n D 4 16 GLN 16 10 ? ? ? D . n D 4 17 GLY 17 11 ? ? ? D . n D 4 18 SER 18 12 ? ? ? D . n D 4 19 ASP 19 13 13 ASP ASP D . n D 4 20 LEU 20 14 14 LEU LEU D . n D 4 21 GLY 21 15 15 GLY GLY D . n D 4 22 LYS 22 16 16 LYS LYS D . n D 4 23 LYS 23 17 17 LYS LYS D . n D 4 24 LEU 24 18 18 LEU LEU D . n D 4 25 LEU 25 19 19 LEU LEU D . n D 4 26 GLN 26 20 20 GLN GLN D . n D 4 27 ALA 27 21 21 ALA ALA D . n D 4 28 ALA 28 22 22 ALA ALA D . n D 4 29 ARG 29 23 23 ARG ARG D . n D 4 30 ALA 30 24 24 ALA ALA D . n D 4 31 GLY 31 25 25 GLY GLY D . n D 4 32 GLN 32 26 26 GLN GLN D . n D 4 33 LEU 33 27 27 LEU LEU D . n D 4 34 ASP 34 28 28 ASP ASP D . n D 4 35 GLU 35 29 29 GLU GLU D . n D 4 36 VAL 36 30 30 VAL VAL D . n D 4 37 ARG 37 31 31 ARG ARG D . n D 4 38 GLU 38 32 32 GLU GLU D . n D 4 39 LEU 39 33 33 LEU LEU D . n D 4 40 LEU 40 34 34 LEU LEU D . n D 4 41 LYS 41 35 35 LYS LYS D . n D 4 42 ALA 42 36 36 ALA ALA D . n D 4 43 GLY 43 37 37 GLY GLY D . n D 4 44 ALA 44 38 38 ALA ALA D . n D 4 45 ASP 45 39 39 ASP ASP D . n D 4 46 VAL 46 40 40 VAL VAL D . n D 4 47 ASN 47 41 41 ASN ASN D . n D 4 48 ALA 48 42 42 ALA ALA D . n D 4 49 LYS 49 43 43 LYS LYS D . n D 4 50 ASP 50 44 44 ASP ASP D . n D 4 51 LEU 51 45 45 LEU LEU D . n D 4 52 ILE 52 46 46 ILE ILE D . n D 4 53 GLY 53 47 47 GLY GLY D . n D 4 54 VAL 54 48 48 VAL VAL D . n D 4 55 THR 55 49 49 THR THR D . n D 4 56 PRO 56 50 50 PRO PRO D . n D 4 57 LEU 57 51 51 LEU LEU D . n D 4 58 HIS 58 52 52 HIS HIS D . n D 4 59 LEU 59 53 53 LEU LEU D . n D 4 60 ALA 60 54 54 ALA ALA D . n D 4 61 ALA 61 55 55 ALA ALA D . n D 4 62 PHE 62 56 56 PHE PHE D . n D 4 63 SER 63 57 57 SER SER D . n D 4 64 GLY 64 58 58 GLY GLY D . n D 4 65 HIS 65 59 59 HIS HIS D . n D 4 66 LEU 66 60 60 LEU LEU D . n D 4 67 GLU 67 61 61 GLU GLU D . n D 4 68 ILE 68 62 62 ILE ILE D . n D 4 69 VAL 69 63 63 VAL VAL D . n D 4 70 GLU 70 64 64 GLU GLU D . n D 4 71 VAL 71 65 65 VAL VAL D . n D 4 72 LEU 72 66 66 LEU LEU D . n D 4 73 LEU 73 67 67 LEU LEU D . n D 4 74 LYS 74 68 68 LYS LYS D . n D 4 75 ALA 75 69 69 ALA ALA D . n D 4 76 SER 76 70 70 SER SER D . n D 4 77 ALA 77 71 71 ALA ALA D . n D 4 78 ASP 78 72 72 ASP ASP D . n D 4 79 VAL 79 73 73 VAL VAL D . n D 4 80 ASN 80 74 74 ASN ASN D . n D 4 81 ALA 81 75 75 ALA ALA D . n D 4 82 LYS 82 76 76 LYS LYS D . n D 4 83 ASP 83 77 77 ASP ASP D . n D 4 84 VAL 84 78 78 VAL VAL D . n D 4 85 SER 85 79 79 SER SER D . n D 4 86 GLY 86 80 80 GLY GLY D . n D 4 87 ARG 87 81 81 ARG ARG D . n D 4 88 THR 88 82 82 THR THR D . n D 4 89 PRO 89 83 83 PRO PRO D . n D 4 90 LEU 90 84 84 LEU LEU D . n D 4 91 HIS 91 85 85 HIS HIS D . n D 4 92 VAL 92 86 86 VAL VAL D . n D 4 93 ALA 93 87 87 ALA ALA D . n D 4 94 ALA 94 88 88 ALA ALA D . n D 4 95 LYS 95 89 89 LYS LYS D . n D 4 96 HIS 96 90 90 HIS HIS D . n D 4 97 GLY 97 91 91 GLY GLY D . n D 4 98 HIS 98 92 92 HIS HIS D . n D 4 99 LEU 99 93 93 LEU LEU D . n D 4 100 GLU 100 94 94 GLU GLU D . n D 4 101 ILE 101 95 95 ILE ILE D . n D 4 102 VAL 102 96 96 VAL VAL D . n D 4 103 GLU 103 97 97 GLU GLU D . n D 4 104 VAL 104 98 98 VAL VAL D . n D 4 105 LEU 105 99 99 LEU LEU D . n D 4 106 LEU 106 100 100 LEU LEU D . n D 4 107 LYS 107 101 101 LYS LYS D . n D 4 108 ALA 108 102 102 ALA ALA D . n D 4 109 GLY 109 103 103 GLY GLY D . n D 4 110 ALA 110 104 104 ALA ALA D . n D 4 111 ASP 111 105 105 ASP ASP D . n D 4 112 VAL 112 106 106 VAL VAL D . n D 4 113 ASN 113 107 107 ASN ASN D . n D 4 114 ALA 114 108 108 ALA ALA D . n D 4 115 LYS 115 109 109 LYS LYS D . n D 4 116 ASP 116 110 110 ASP ASP D . n D 4 117 LEU 117 111 111 LEU LEU D . n D 4 118 ILE 118 112 112 ILE ILE D . n D 4 119 GLY 119 113 113 GLY GLY D . n D 4 120 PHE 120 114 114 PHE PHE D . n D 4 121 THR 121 115 115 THR THR D . n D 4 122 PRO 122 116 116 PRO PRO D . n D 4 123 LEU 123 117 117 LEU LEU D . n D 4 124 HIS 124 118 118 HIS HIS D . n D 4 125 LEU 125 119 119 LEU LEU D . n D 4 126 ALA 126 120 120 ALA ALA D . n D 4 127 ALA 127 121 121 ALA ALA D . n D 4 128 GLN 128 122 122 GLN GLN D . n D 4 129 PHE 129 123 123 PHE PHE D . n D 4 130 GLY 130 124 124 GLY GLY D . n D 4 131 HIS 131 125 125 HIS HIS D . n D 4 132 LEU 132 126 126 LEU LEU D . n D 4 133 GLU 133 127 127 GLU GLU D . n D 4 134 ILE 134 128 128 ILE ILE D . n D 4 135 VAL 135 129 129 VAL VAL D . n D 4 136 GLU 136 130 130 GLU GLU D . n D 4 137 VAL 137 131 131 VAL VAL D . n D 4 138 LEU 138 132 132 LEU LEU D . n D 4 139 LEU 139 133 133 LEU LEU D . n D 4 140 LYS 140 134 134 LYS LYS D . n D 4 141 ALA 141 135 135 ALA ALA D . n D 4 142 GLY 142 136 136 GLY GLY D . n D 4 143 ALA 143 137 137 ALA ALA D . n D 4 144 ASP 144 138 138 ASP ASP D . n D 4 145 VAL 145 139 139 VAL VAL D . n D 4 146 ASN 146 140 140 ASN ASN D . n D 4 147 ALA 147 141 141 ALA ALA D . n D 4 148 GLN 148 142 142 GLN GLN D . n D 4 149 ASP 149 143 143 ASP ASP D . n D 4 150 LYS 150 144 144 LYS LYS D . n D 4 151 SER 151 145 145 SER SER D . n D 4 152 GLY 152 146 146 GLY GLY D . n D 4 153 LYS 153 147 147 LYS LYS D . n D 4 154 THR 154 148 148 THR THR D . n D 4 155 PRO 155 149 149 PRO PRO D . n D 4 156 ALA 156 150 150 ALA ALA D . n D 4 157 ASP 157 151 151 ASP ASP D . n D 4 158 LEU 158 152 152 LEU LEU D . n D 4 159 ALA 159 153 153 ALA ALA D . n D 4 160 ALA 160 154 154 ALA ALA D . n D 4 161 ARG 161 155 155 ARG ARG D . n D 4 162 ALA 162 156 156 ALA ALA D . n D 4 163 GLY 163 157 157 GLY GLY D . n D 4 164 HIS 164 158 158 HIS HIS D . n D 4 165 GLN 165 159 159 GLN GLN D . n D 4 166 ASP 166 160 160 ASP ASP D . n D 4 167 ILE 167 161 161 ILE ILE D . n D 4 168 ALA 168 162 162 ALA ALA D . n D 4 169 GLU 169 163 163 GLU GLU D . n D 4 170 VAL 170 164 164 VAL VAL D . n D 4 171 LEU 171 165 165 LEU LEU D . n D 4 172 GLN 172 166 166 GLN GLN D . n D 4 173 LYS 173 167 167 LYS LYS D . n D 4 174 ALA 174 168 168 ALA ALA D . n D 4 175 ALA 175 169 169 ALA ALA D . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9FE1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9FE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9FE1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9FE1 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.005 ? 4400 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.851 ? 5967 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 15.204 ? 1600 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.051 ? 641 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.012 ? 777 ? f_plane_restr ? ? # _struct.entry_id 9FE1 _struct.title 'Cryo-EM structure of the ternary DARPin NY_1/HLA-A0201/NY-ESO1 complex.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9FE1 _struct_keywords.text 'DARPin targeting MHC molecules in complex with tumor-associated peptide antigens, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q8WLS4_HUMAN Q8WLS4 ? 1 ;GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYL EGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT FQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP ; 25 2 UNP B2MG_HUMAN P61769 ? 2 ;IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC RVNHVTLSQPKIVKWDRDM ; 21 3 UNP CTG1B_HUMAN P78358 ? 3 SLLMWITQC 157 4 PDB 9FE1 9FE1 ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9FE1 A 2 ? 277 ? Q8WLS4 25 ? 300 ? 1 276 2 2 9FE1 B 2 ? 100 ? P61769 21 ? 119 ? 1 99 3 3 9FE1 C 1 ? 9 ? P78358 157 ? 165 ? 1 9 4 4 9FE1 D 1 ? 175 ? 9FE1 -5 ? 169 ? -5 169 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9FE1 MET A 1 ? UNP Q8WLS4 ? ? 'initiating methionine' 0 1 1 9FE1 GLY A 278 ? UNP Q8WLS4 ? ? 'expression tag' 277 2 1 9FE1 SER A 279 ? UNP Q8WLS4 ? ? 'expression tag' 278 3 1 9FE1 GLY A 280 ? UNP Q8WLS4 ? ? 'expression tag' 279 4 1 9FE1 GLY A 281 ? UNP Q8WLS4 ? ? 'expression tag' 280 5 1 9FE1 SER A 282 ? UNP Q8WLS4 ? ? 'expression tag' 281 6 1 9FE1 ALA A 283 ? UNP Q8WLS4 ? ? 'expression tag' 282 7 1 9FE1 TRP A 284 ? UNP Q8WLS4 ? ? 'expression tag' 283 8 1 9FE1 SER A 285 ? UNP Q8WLS4 ? ? 'expression tag' 284 9 1 9FE1 HIS A 286 ? UNP Q8WLS4 ? ? 'expression tag' 285 10 1 9FE1 PRO A 287 ? UNP Q8WLS4 ? ? 'expression tag' 286 11 1 9FE1 GLN A 288 ? UNP Q8WLS4 ? ? 'expression tag' 287 12 1 9FE1 PHE A 289 ? UNP Q8WLS4 ? ? 'expression tag' 288 13 1 9FE1 GLU A 290 ? UNP Q8WLS4 ? ? 'expression tag' 289 14 1 9FE1 LYS A 291 ? UNP Q8WLS4 ? ? 'expression tag' 290 15 2 9FE1 MET B 1 ? UNP P61769 ? ? 'initiating methionine' 0 16 3 9FE1 VAL C 9 ? UNP P78358 CYS 165 conflict 9 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'electron microscopy' 'not applicable' 2 1 'gel filtration' ;Complex isolated from Superdex 200 GL 10/300 SEC in 25 mM HEPES, 150 mM NaCl, pH 7.4; eluted at retention volume corresponding to the expected MW. ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TRP A 52 ? GLU A 56 ? TRP A 51 GLU A 55 5 ? 5 HELX_P HELX_P2 AA2 GLY A 57 ? TYR A 86 ? GLY A 56 TYR A 85 1 ? 30 HELX_P HELX_P3 AA3 ASP A 138 ? HIS A 152 ? ASP A 137 HIS A 151 1 ? 15 HELX_P HELX_P4 AA4 HIS A 152 ? GLY A 163 ? HIS A 151 GLY A 162 1 ? 12 HELX_P HELX_P5 AA5 GLY A 163 ? GLY A 176 ? GLY A 162 GLY A 175 1 ? 14 HELX_P HELX_P6 AA6 LEU D 20 ? GLY D 31 ? LEU D 14 GLY D 25 1 ? 12 HELX_P HELX_P7 AA7 GLN D 32 ? GLY D 43 ? GLN D 26 GLY D 37 1 ? 12 HELX_P HELX_P8 AA8 THR D 55 ? GLY D 64 ? THR D 49 GLY D 58 1 ? 10 HELX_P HELX_P9 AA9 HIS D 65 ? ALA D 75 ? HIS D 59 ALA D 69 1 ? 11 HELX_P HELX_P10 AB1 THR D 88 ? GLY D 97 ? THR D 82 GLY D 91 1 ? 10 HELX_P HELX_P11 AB2 HIS D 98 ? GLY D 109 ? HIS D 92 GLY D 103 1 ? 12 HELX_P HELX_P12 AB3 THR D 121 ? GLY D 130 ? THR D 115 GLY D 124 1 ? 10 HELX_P HELX_P13 AB4 HIS D 131 ? ALA D 141 ? HIS D 125 ALA D 135 1 ? 11 HELX_P HELX_P14 AB5 THR D 154 ? GLY D 163 ? THR D 148 GLY D 157 1 ? 10 HELX_P HELX_P15 AB6 HIS D 164 ? ALA D 175 ? HIS D 158 ALA D 169 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 102 SG ? ? ? 1_555 A CYS 165 SG ? ? A CYS 101 A CYS 164 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 204 SG ? ? ? 1_555 A CYS 260 SG ? ? A CYS 203 A CYS 259 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? B CYS 26 SG ? ? ? 1_555 B CYS 81 SG ? ? B CYS 25 B CYS 80 1_555 ? ? ? ? ? ? ? 2.036 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 102 ? CYS A 165 ? CYS A 101 ? 1_555 CYS A 164 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 204 ? CYS A 260 ? CYS A 203 ? 1_555 CYS A 259 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 26 ? CYS B 81 ? CYS B 25 ? 1_555 CYS B 80 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 210 A . ? TYR 209 A PRO 211 A ? PRO 210 A 1 -1.08 2 HIS 32 B . ? HIS 31 B PRO 33 B ? PRO 32 B 1 -0.92 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 4 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 32 ? ASP A 38 ? THR A 31 ASP A 37 AA1 2 ARG A 22 ? VAL A 29 ? ARG A 21 VAL A 28 AA1 3 HIS A 4 ? VAL A 13 ? HIS A 3 VAL A 12 AA1 4 THR A 95 ? VAL A 104 ? THR A 94 VAL A 103 AA1 5 PHE A 110 ? TYR A 119 ? PHE A 109 TYR A 118 AA1 6 LYS A 122 ? LEU A 127 ? LYS A 121 LEU A 126 AA1 7 TRP A 134 ? ALA A 136 ? TRP A 133 ALA A 135 AA2 1 LYS A 187 ? HIS A 193 ? LYS A 186 HIS A 192 AA2 2 GLU A 199 ? PHE A 209 ? GLU A 198 PHE A 208 AA2 3 PHE A 242 ? PRO A 251 ? PHE A 241 PRO A 250 AA2 4 ARG A 235 ? PRO A 236 ? ARG A 234 PRO A 235 AA3 1 THR A 215 ? GLN A 219 ? THR A 214 GLN A 218 AA3 2 THR A 259 ? GLN A 263 ? THR A 258 GLN A 262 AA3 3 LEU A 273 ? ARG A 274 ? LEU A 272 ARG A 273 AA4 1 LYS B 7 ? SER B 12 ? LYS B 6 SER B 11 AA4 2 ASN B 22 ? PHE B 31 ? ASN B 21 PHE B 30 AA4 3 PHE B 63 ? PHE B 71 ? PHE B 62 PHE B 70 AA4 4 GLU B 51 ? HIS B 52 ? GLU B 50 HIS B 51 AA5 1 LYS B 7 ? SER B 12 ? LYS B 6 SER B 11 AA5 2 ASN B 22 ? PHE B 31 ? ASN B 21 PHE B 30 AA5 3 PHE B 63 ? PHE B 71 ? PHE B 62 PHE B 70 AA5 4 SER B 56 ? PHE B 57 ? SER B 55 PHE B 56 AA6 1 GLU B 45 ? ARG B 46 ? GLU B 44 ARG B 45 AA6 2 GLU B 37 ? LYS B 42 ? GLU B 36 LYS B 41 AA6 3 TYR B 79 ? ASN B 84 ? TYR B 78 ASN B 83 AA6 4 LYS B 92 ? LYS B 95 ? LYS B 91 LYS B 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE A 34 ? O PHE A 33 N GLY A 27 ? N GLY A 26 AA1 2 3 O TYR A 28 ? O TYR A 27 N ARG A 7 ? N ARG A 6 AA1 3 4 N SER A 12 ? N SER A 11 O VAL A 96 ? O VAL A 95 AA1 4 5 N ASP A 103 ? N ASP A 102 O ARG A 112 ? O ARG A 111 AA1 5 6 N HIS A 115 ? N HIS A 114 O LEU A 127 ? O LEU A 126 AA1 6 7 N ALA A 126 ? N ALA A 125 O THR A 135 ? O THR A 134 AA2 1 2 N HIS A 189 ? N HIS A 188 O TRP A 205 ? O TRP A 204 AA2 2 3 N ALA A 206 ? N ALA A 205 O LYS A 244 ? O LYS A 243 AA2 3 4 O GLN A 243 ? O GLN A 242 N ARG A 235 ? N ARG A 234 AA3 1 2 N THR A 215 ? N THR A 214 O GLN A 263 ? O GLN A 262 AA3 2 3 N CYS A 260 ? N CYS A 259 O LEU A 273 ? O LEU A 272 AA4 1 2 N TYR B 11 ? N TYR B 10 O ASN B 25 ? O ASN B 24 AA4 2 3 N CYS B 26 ? N CYS B 25 O TYR B 67 ? O TYR B 66 AA4 3 4 O TYR B 68 ? O TYR B 67 N GLU B 51 ? N GLU B 50 AA5 1 2 N TYR B 11 ? N TYR B 10 O ASN B 25 ? O ASN B 24 AA5 2 3 N CYS B 26 ? N CYS B 25 O TYR B 67 ? O TYR B 66 AA5 3 4 O TYR B 64 ? O TYR B 63 N SER B 56 ? N SER B 55 AA6 1 2 O GLU B 45 ? O GLU B 44 N LYS B 42 ? N LYS B 41 AA6 2 3 N LEU B 41 ? N LEU B 40 O ALA B 80 ? O ALA B 79 AA6 3 4 N CYS B 81 ? N CYS B 80 O VAL B 94 ? O VAL B 93 # _pdbx_entry_details.entry_id 9FE1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HH A TYR 159 ? ? O C SER 1 ? ? 1.54 2 1 HG B SER 11 ? ? O B HIS 13 ? ? 1.55 3 1 O A ASP 129 ? ? HH11 A ARG 131 ? ? 1.55 4 1 O A TRP 60 ? ? HG1 A THR 64 ? ? 1.56 5 1 HG B SER 57 ? ? OD1 B ASP 59 ? ? 1.60 6 1 OG B SER 57 ? ? OD1 B ASP 59 ? ? 2.04 7 1 O A ASP 129 ? ? NH1 A ARG 131 ? ? 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 29 ? ? 50.81 -116.49 2 1 PHE A 109 ? ? -48.95 107.12 3 1 THR A 178 ? ? -135.09 -33.54 4 1 ARG A 219 ? ? -91.44 48.18 5 1 THR A 225 ? ? -72.11 44.70 6 1 GLN A 226 ? ? -116.10 -82.71 7 1 ASP A 238 ? ? -68.01 2.28 8 1 GLU A 254 ? ? -82.66 48.49 9 1 PRO A 269 ? ? -46.65 154.37 10 1 ARG B 97 ? ? -59.80 -7.22 11 1 ASP D 72 ? ? -64.15 99.55 12 1 HIS D 125 ? ? -100.01 79.94 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 48 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.098 _pdbx_validate_planes.type 'SIDE CHAIN' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9FE1 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ;The crystal structures of NY_1 and HLA-A0201/NY-ESO1 (PDB 1S9W) were placed into the initial map in ChimeraX. The model was iteratively refined by model building in Coot and ChimeraX-Isolde, as well as Phenix real space refinement with integrated amber force field with Ramachandran, secondary structure and reference structure restraints ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol ? # loop_ _em_3d_fitting_list.id _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.details _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id 1 1 1S9W ? ? ? ? ? PDB 'experimental model' 1S9W 1 2 1 . . . 'NY_1 crystal structure, PDB code given in publication' ? ? Other 'experimental model' ? ? # _em_3d_reconstruction.entry_id 9FE1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 204743 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '25 mM HEPES, 150 mM NaCl, pH 7.4' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Ternary complex formed between the DARPin NY_1 and HLA-A0201/hb2m/NY-ESO1_157-165(9V)' _em_entity_assembly.details ;Size-exclusion chromatography (SEC) was used to purify refolded complexes of HLA-A0201 with human beta-2-microglobulin (hb2m) and the peptide NY-ESO1157-165(9V). Strep-Tactin Superflow high capacity columns (1 mL, IBA lifescience) run in 20 mM HEPES, 300 mM NaCl pH 7.5 were used for further purification. After a column wash, the protein was eluted using the same buffer supplemented with 2.5 mM desthiobiotin. TEV-cleaved DARPin NY_1 was reverse-purified via IMAC and the monomer was isolated from Superdex 200 equilibrated in 20 mM HEPES, 150 mM NaCl pH 7.5. For cross-linking, HLA-A0201/NY-ESO1157-165(9V) was mixed in a 1:2 molar ratio with NY_1, concentrated to an absorbance at 280 nm (Abs280) of 2.3, and incubated for 45 min in 25 mM HEPES, 150 mM NaCl, supplemented with 1.4 mM BS(PEG)5 (BS5) (ThermoScientific). The cross-linker was quenched by addition of 25 mM Tris. Samples for grid screening were isolated from Superdex 200 GL 10/300 SEC in 25 mM HEPES, 150 mM NaCl, pH 7.4, and concentrated to Abs280 values of 2. ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3, 4' # _em_imaging.entry_id 9FE1 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_vitrification.entry_id 9FE1 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9FE1 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9FE1 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A GLU 275 ? A GLU 276 3 1 Y 1 A PRO 276 ? A PRO 277 4 1 Y 1 A GLY 277 ? A GLY 278 5 1 Y 1 A SER 278 ? A SER 279 6 1 Y 1 A GLY 279 ? A GLY 280 7 1 Y 1 A GLY 280 ? A GLY 281 8 1 Y 1 A SER 281 ? A SER 282 9 1 Y 1 A ALA 282 ? A ALA 283 10 1 Y 1 A TRP 283 ? A TRP 284 11 1 Y 1 A SER 284 ? A SER 285 12 1 Y 1 A HIS 285 ? A HIS 286 13 1 Y 1 A PRO 286 ? A PRO 287 14 1 Y 1 A GLN 287 ? A GLN 288 15 1 Y 1 A PHE 288 ? A PHE 289 16 1 Y 1 A GLU 289 ? A GLU 290 17 1 Y 1 A LYS 290 ? A LYS 291 18 1 Y 1 B MET 99 ? B MET 100 19 1 Y 1 D MET -5 ? D MET 1 20 1 Y 1 D ARG -4 ? D ARG 2 21 1 Y 1 D GLY -3 ? D GLY 3 22 1 Y 1 D SER -2 ? D SER 4 23 1 Y 1 D HIS -1 ? D HIS 5 24 1 Y 1 D HIS 0 ? D HIS 6 25 1 Y 1 D HIS 1 ? D HIS 7 26 1 Y 1 D HIS 2 ? D HIS 8 27 1 Y 1 D HIS 3 ? D HIS 9 28 1 Y 1 D HIS 4 ? D HIS 10 29 1 Y 1 D GLU 5 ? D GLU 11 30 1 Y 1 D ASN 6 ? D ASN 12 31 1 Y 1 D LEU 7 ? D LEU 13 32 1 Y 1 D TYR 8 ? D TYR 14 33 1 Y 1 D PHE 9 ? D PHE 15 34 1 Y 1 D GLN 10 ? D GLN 16 35 1 Y 1 D GLY 11 ? D GLY 17 36 1 Y 1 D SER 12 ? D SER 18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2024-05-17 _em_admin.deposition_site PDBE _em_admin.entry_id 9FE1 _em_admin.last_update 2025-12-10 _em_admin.map_release_date 2025-05-28 _em_admin.title 'Cryo-EM structure of the ternary DARPin NY_1/HLA-A0201/NY-ESO1 complex.' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.06 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 2.3 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 57.5 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 10855 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 7726585 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' 'Template picker' 1 1 ? ? cryoSPARC 3.3.1 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 2.8.1 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 3.3.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.1.1 'MODEL FITTING' ? 8 ? 1 ? ISOLDE 1.1.0 'MODEL FITTING' ? 9 ? 1 ? Coot 0.9.5 OTHER ? 10 ? ? ? ? ? 'MODEL REFINEMENT' ? 11 ? 1 ? PHENIX 1.19 'INITIAL EULER ASSIGNMENT' ? 12 1 ? ? cryoSPARC 3.3.1 'FINAL EULER ASSIGNMENT' ? 13 1 ? ? cryoSPARC 3.3.1 CLASSIFICATION ? 14 1 ? ? cryoSPARC 3.3.1 RECONSTRUCTION ? 15 1 ? ? cryoSPARC 3.3.1 # _em_specimen.concentration 0.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Knut and Alice Wallenberg Foundation' Sweden ? 1 Cancerfonden Sweden ? 2 'Swedish Research Council' Sweden ? 3 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 1S9W 2 'experimental model' Other ? # _atom_sites.entry_id 9FE1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #