HEADER DNA BINDING PROTEIN 22-MAY-24 9FF5 TITLE THE STRUCTURE OF G.KAUSTOPHILUS T-1 SCOC-23BP DSDNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*AP*TP*AP*TP*TP*AP*TP*TP*AP*AP*CP*AP*AP*AP*AP*TP*AP*AP*TP*AP*TP* COMPND 4 T)-3'); COMPND 5 CHAIN: I, E, F; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*AP*TP*AP*TP*TP*AP*TP*TP*TP*TP*GP*TP*TP*AP*AP*TP*AP*AP*TP*AP*TP* COMPND 10 T)-3'); COMPND 11 CHAIN: J, H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR HPR; COMPND 15 CHAIN: B, C, A, D; COMPND 16 SYNONYM: PROTEASE PRODUCTION REGULATORY PROTEIN HPR; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'-D(*AP*AP*TP*AP*TP*AP*TP*T)-3'); COMPND 20 CHAIN: G; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 4 ORGANISM_TAXID: 1462; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 8 ORGANISM_TAXID: 1462; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 11 ORGANISM_TAXID: 1462; SOURCE 12 GENE: HPR, GK0652; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 18 ORGANISM_TAXID: 1462 KEYWDS SCOC, GLOBAL REGULATOR, GEOBACILLUS KAUSTOPHILUS, DNA BINDING KEYWDS 2 PROTEIN, TETRAMER, DNA BENDING, HPR EXPDTA X-RAY DIFFRACTION AUTHOR N.HADAD,S.SHULAMI,S.POMYALOV,Y.SHOHAM,G.SHOHAM REVDAT 1 04-JUN-25 9FF5 0 JRNL AUTH N.HADAD,S.SHULAMI,S.POMYALOV,Y.SHOHAM,G.SHOHAM JRNL TITL THE STRUCTURE OF G.KAUSTOPHILUS T-1 SCOC-23BP DSDNA COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.530 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6800 - 6.3600 0.99 3164 148 0.2220 0.2620 REMARK 3 2 6.3500 - 5.0500 1.00 3152 166 0.2444 0.2944 REMARK 3 3 5.0500 - 4.4100 1.00 3115 151 0.2010 0.2528 REMARK 3 4 4.4100 - 4.0100 1.00 3110 155 0.2218 0.2700 REMARK 3 5 4.0100 - 3.7200 1.00 3161 125 0.2656 0.3328 REMARK 3 6 3.7200 - 3.5000 0.99 3088 146 0.3113 0.3769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.591 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 115.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 8836 REMARK 3 ANGLE : 1.387 12392 REMARK 3 CHIRALITY : 0.072 1330 REMARK 3 PLANARITY : 0.009 1145 REMARK 3 DIHEDRAL : 27.206 1936 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292138514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21515 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% MPD AND 0.08M MAGNESIUM ACETATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.07350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J, B, C, A, D, E, G, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 GLN B 6 REMARK 465 ARG B 185 REMARK 465 LYS B 186 REMARK 465 PRO B 187 REMARK 465 LYS B 188 REMARK 465 THR B 189 REMARK 465 GLU B 190 REMARK 465 GLU B 191 REMARK 465 HIS B 192 REMARK 465 GLU B 193 REMARK 465 LYS B 194 REMARK 465 GLU B 195 REMARK 465 LEU B 196 REMARK 465 ALA B 197 REMARK 465 SER B 198 REMARK 465 GLN B 199 REMARK 465 ALA B 200 REMARK 465 ASN B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ALA C 3 REMARK 465 THR C 4 REMARK 465 GLU C 5 REMARK 465 GLN C 6 REMARK 465 ARG C 185 REMARK 465 LYS C 186 REMARK 465 PRO C 187 REMARK 465 LYS C 188 REMARK 465 THR C 189 REMARK 465 GLU C 190 REMARK 465 GLU C 191 REMARK 465 HIS C 192 REMARK 465 GLU C 193 REMARK 465 LYS C 194 REMARK 465 GLU C 195 REMARK 465 LEU C 196 REMARK 465 ALA C 197 REMARK 465 SER C 198 REMARK 465 GLN C 199 REMARK 465 ALA C 200 REMARK 465 ASN C 201 REMARK 465 HIS C 202 REMARK 465 HIS C 203 REMARK 465 HIS C 204 REMARK 465 HIS C 205 REMARK 465 HIS C 206 REMARK 465 HIS C 207 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 LYS A 188 REMARK 465 THR A 189 REMARK 465 GLU A 190 REMARK 465 GLU A 191 REMARK 465 HIS A 192 REMARK 465 GLU A 193 REMARK 465 LYS A 194 REMARK 465 GLU A 195 REMARK 465 LEU A 196 REMARK 465 ALA A 197 REMARK 465 SER A 198 REMARK 465 GLN A 199 REMARK 465 ALA A 200 REMARK 465 ASN A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 ALA D 3 REMARK 465 THR D 4 REMARK 465 GLU D 5 REMARK 465 GLN D 6 REMARK 465 ARG D 185 REMARK 465 LYS D 186 REMARK 465 PRO D 187 REMARK 465 LYS D 188 REMARK 465 THR D 189 REMARK 465 GLU D 190 REMARK 465 GLU D 191 REMARK 465 HIS D 192 REMARK 465 GLU D 193 REMARK 465 LYS D 194 REMARK 465 GLU D 195 REMARK 465 LEU D 196 REMARK 465 ALA D 197 REMARK 465 SER D 198 REMARK 465 GLN D 199 REMARK 465 ALA D 200 REMARK 465 ASN D 201 REMARK 465 HIS D 202 REMARK 465 HIS D 203 REMARK 465 HIS D 204 REMARK 465 HIS D 205 REMARK 465 HIS D 206 REMARK 465 HIS D 207 REMARK 465 DC E 12 REMARK 465 DA E 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DA J 1 O2 DT F 23 2445 2.01 REMARK 500 OP2 DT E 23 O5' DA F 1 2565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA I 14 O3' DA I 14 C3' -0.036 REMARK 500 DT I 22 O3' DT I 22 C3' 0.093 REMARK 500 DT I 23 C1' DT I 23 N1 0.107 REMARK 500 DA J 2 O3' DA J 2 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA I 13 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA I 18 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA I 19 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT I 20 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT I 22 C4' - C3' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DT I 22 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT I 23 O5' - P - OP1 ANGL. DEV. = -10.7 DEGREES REMARK 500 DT I 23 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DA J 1 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT J 10 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT J 14 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT J 14 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA J 15 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 LYS B 29 CD - CE - NZ ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG D 153 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT E 9 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA F 18 C3' - C2' - C1' ANGL. DEV. = -6.9 DEGREES REMARK 500 DA F 18 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DT F 22 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA H 2 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT H 20 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET C 72 156.43 177.08 REMARK 500 LYS C 87 -6.84 -57.45 REMARK 500 LYS C 99 -1.80 -57.35 REMARK 500 ILE C 145 53.31 37.30 REMARK 500 PHE A 42 -3.60 76.85 REMARK 500 VAL A 71 51.34 31.25 REMARK 500 ASP A 179 -120.26 50.99 REMARK 500 THR D 120 55.34 -97.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9FA0 RELATED DB: PDB DBREF 9FF5 I 1 23 PDB 9FF5 9FF5 1 23 DBREF 9FF5 J 1 23 PDB 9FF5 9FF5 1 23 DBREF 9FF5 B 1 201 UNP Q5L293 HPR_GEOKA 1 201 DBREF 9FF5 C 1 201 UNP Q5L293 HPR_GEOKA 1 201 DBREF 9FF5 A 1 201 UNP Q5L293 HPR_GEOKA 1 201 DBREF 9FF5 D 1 201 UNP Q5L293 HPR_GEOKA 1 201 DBREF 9FF5 E 1 23 PDB 9FF5 9FF5 1 23 DBREF 9FF5 G 1 23 PDB 9FF5 9FF5 1 23 DBREF 9FF5 F 1 23 PDB 9FF5 9FF5 1 23 DBREF 9FF5 H 1 23 PDB 9FF5 9FF5 1 23 SEQADV 9FF5 HIS B 202 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS B 203 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS B 204 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS B 205 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS B 206 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS B 207 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS C 202 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS C 203 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS C 204 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS C 205 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS C 206 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS C 207 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS A 202 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS A 203 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS A 204 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS A 205 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS A 206 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS A 207 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS D 202 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS D 203 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS D 204 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS D 205 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS D 206 UNP Q5L293 EXPRESSION TAG SEQADV 9FF5 HIS D 207 UNP Q5L293 EXPRESSION TAG SEQRES 1 I 23 DA DA DT DA DT DT DA DT DT DA DA DC DA SEQRES 2 I 23 DA DA DA DT DA DA DT DA DT DT SEQRES 1 J 23 DA DA DT DA DT DT DA DT DT DT DT DG DT SEQRES 2 J 23 DT DA DA DT DA DA DT DA DT DT SEQRES 1 B 207 MET LYS ALA THR GLU GLN HIS TYR SER ILE LYS GLU ALA SEQRES 2 B 207 MET LEU PHE SER GLN ARG ILE ALA GLN LEU SER LYS ALA SEQRES 3 B 207 LEU TRP LYS SER ILE GLU LYS ASP TRP GLN ARG TRP ILE SEQRES 4 B 207 LYS PRO PHE ASP LEU ASN ILE ASN GLU HIS HIS ILE LEU SEQRES 5 B 207 TRP ILE ALA TYR HIS PHE LYS GLY ALA SER ILE SER GLU SEQRES 6 B 207 ILE ALA LYS PHE GLY VAL MET HIS VAL SER THR ALA PHE SEQRES 7 B 207 ASN PHE SER LYS LYS LEU GLU GLU LYS GLY LEU LEU SER SEQRES 8 B 207 PHE SER LYS LYS GLN ASP ASP LYS ARG ASN THR TYR ILE SEQRES 9 B 207 GLU LEU THR GLU LYS GLY GLU GLU VAL LEU MET LYS LEU SEQRES 10 B 207 MET GLU THR TYR ASP PRO THR LYS ASN ALA VAL PHE ASN SEQRES 11 B 207 GLY ALA LEU PRO LEU ARG GLU LEU TYR GLY LYS PHE PRO SEQRES 12 B 207 GLU ILE LEU GLU MET MET CYS ILE VAL ARG ASN ILE TYR SEQRES 13 B 207 GLY ASP ASP PHE MET GLU ILE PHE GLU ARG ALA PHE GLU SEQRES 14 B 207 ASN ILE LYS GLU ASP PHE ILE GLU GLN ASP GLY LYS LEU SEQRES 15 B 207 VAL LYS ARG LYS PRO LYS THR GLU GLU HIS GLU LYS GLU SEQRES 16 B 207 LEU ALA SER GLN ALA ASN HIS HIS HIS HIS HIS HIS SEQRES 1 C 207 MET LYS ALA THR GLU GLN HIS TYR SER ILE LYS GLU ALA SEQRES 2 C 207 MET LEU PHE SER GLN ARG ILE ALA GLN LEU SER LYS ALA SEQRES 3 C 207 LEU TRP LYS SER ILE GLU LYS ASP TRP GLN ARG TRP ILE SEQRES 4 C 207 LYS PRO PHE ASP LEU ASN ILE ASN GLU HIS HIS ILE LEU SEQRES 5 C 207 TRP ILE ALA TYR HIS PHE LYS GLY ALA SER ILE SER GLU SEQRES 6 C 207 ILE ALA LYS PHE GLY VAL MET HIS VAL SER THR ALA PHE SEQRES 7 C 207 ASN PHE SER LYS LYS LEU GLU GLU LYS GLY LEU LEU SER SEQRES 8 C 207 PHE SER LYS LYS GLN ASP ASP LYS ARG ASN THR TYR ILE SEQRES 9 C 207 GLU LEU THR GLU LYS GLY GLU GLU VAL LEU MET LYS LEU SEQRES 10 C 207 MET GLU THR TYR ASP PRO THR LYS ASN ALA VAL PHE ASN SEQRES 11 C 207 GLY ALA LEU PRO LEU ARG GLU LEU TYR GLY LYS PHE PRO SEQRES 12 C 207 GLU ILE LEU GLU MET MET CYS ILE VAL ARG ASN ILE TYR SEQRES 13 C 207 GLY ASP ASP PHE MET GLU ILE PHE GLU ARG ALA PHE GLU SEQRES 14 C 207 ASN ILE LYS GLU ASP PHE ILE GLU GLN ASP GLY LYS LEU SEQRES 15 C 207 VAL LYS ARG LYS PRO LYS THR GLU GLU HIS GLU LYS GLU SEQRES 16 C 207 LEU ALA SER GLN ALA ASN HIS HIS HIS HIS HIS HIS SEQRES 1 A 207 MET LYS ALA THR GLU GLN HIS TYR SER ILE LYS GLU ALA SEQRES 2 A 207 MET LEU PHE SER GLN ARG ILE ALA GLN LEU SER LYS ALA SEQRES 3 A 207 LEU TRP LYS SER ILE GLU LYS ASP TRP GLN ARG TRP ILE SEQRES 4 A 207 LYS PRO PHE ASP LEU ASN ILE ASN GLU HIS HIS ILE LEU SEQRES 5 A 207 TRP ILE ALA TYR HIS PHE LYS GLY ALA SER ILE SER GLU SEQRES 6 A 207 ILE ALA LYS PHE GLY VAL MET HIS VAL SER THR ALA PHE SEQRES 7 A 207 ASN PHE SER LYS LYS LEU GLU GLU LYS GLY LEU LEU SER SEQRES 8 A 207 PHE SER LYS LYS GLN ASP ASP LYS ARG ASN THR TYR ILE SEQRES 9 A 207 GLU LEU THR GLU LYS GLY GLU GLU VAL LEU MET LYS LEU SEQRES 10 A 207 MET GLU THR TYR ASP PRO THR LYS ASN ALA VAL PHE ASN SEQRES 11 A 207 GLY ALA LEU PRO LEU ARG GLU LEU TYR GLY LYS PHE PRO SEQRES 12 A 207 GLU ILE LEU GLU MET MET CYS ILE VAL ARG ASN ILE TYR SEQRES 13 A 207 GLY ASP ASP PHE MET GLU ILE PHE GLU ARG ALA PHE GLU SEQRES 14 A 207 ASN ILE LYS GLU ASP PHE ILE GLU GLN ASP GLY LYS LEU SEQRES 15 A 207 VAL LYS ARG LYS PRO LYS THR GLU GLU HIS GLU LYS GLU SEQRES 16 A 207 LEU ALA SER GLN ALA ASN HIS HIS HIS HIS HIS HIS SEQRES 1 D 207 MET LYS ALA THR GLU GLN HIS TYR SER ILE LYS GLU ALA SEQRES 2 D 207 MET LEU PHE SER GLN ARG ILE ALA GLN LEU SER LYS ALA SEQRES 3 D 207 LEU TRP LYS SER ILE GLU LYS ASP TRP GLN ARG TRP ILE SEQRES 4 D 207 LYS PRO PHE ASP LEU ASN ILE ASN GLU HIS HIS ILE LEU SEQRES 5 D 207 TRP ILE ALA TYR HIS PHE LYS GLY ALA SER ILE SER GLU SEQRES 6 D 207 ILE ALA LYS PHE GLY VAL MET HIS VAL SER THR ALA PHE SEQRES 7 D 207 ASN PHE SER LYS LYS LEU GLU GLU LYS GLY LEU LEU SER SEQRES 8 D 207 PHE SER LYS LYS GLN ASP ASP LYS ARG ASN THR TYR ILE SEQRES 9 D 207 GLU LEU THR GLU LYS GLY GLU GLU VAL LEU MET LYS LEU SEQRES 10 D 207 MET GLU THR TYR ASP PRO THR LYS ASN ALA VAL PHE ASN SEQRES 11 D 207 GLY ALA LEU PRO LEU ARG GLU LEU TYR GLY LYS PHE PRO SEQRES 12 D 207 GLU ILE LEU GLU MET MET CYS ILE VAL ARG ASN ILE TYR SEQRES 13 D 207 GLY ASP ASP PHE MET GLU ILE PHE GLU ARG ALA PHE GLU SEQRES 14 D 207 ASN ILE LYS GLU ASP PHE ILE GLU GLN ASP GLY LYS LEU SEQRES 15 D 207 VAL LYS ARG LYS PRO LYS THR GLU GLU HIS GLU LYS GLU SEQRES 16 D 207 LEU ALA SER GLN ALA ASN HIS HIS HIS HIS HIS HIS SEQRES 1 E 23 DA DA DT DA DT DT DA DT DT DA DA DC DA SEQRES 2 E 23 DA DA DA DT DA DA DT DA DT DT SEQRES 1 G 8 DA DA DT DA DT DA DT DT SEQRES 1 F 23 DA DA DT DA DT DT DA DT DT DA DA DC DA SEQRES 2 F 23 DA DA DA DT DA DA DT DA DT DT SEQRES 1 H 23 DA DA DT DA DT DT DA DT DT DT DT DG DT SEQRES 2 H 23 DT DA DA DT DA DA DT DA DT DT HELIX 1 AA1 SER B 9 LYS B 40 1 32 HELIX 2 AA2 PRO B 41 ASP B 43 5 3 HELIX 3 AA3 ASN B 45 PHE B 58 1 14 HELIX 4 AA4 ILE B 63 GLY B 70 1 8 HELIX 5 AA5 HIS B 73 LYS B 87 1 15 HELIX 6 AA6 THR B 107 GLU B 119 1 13 HELIX 7 AA7 ASN B 126 GLY B 140 1 15 HELIX 8 AA8 ILE B 145 GLY B 157 1 13 HELIX 9 AA9 GLY B 157 PHE B 175 1 19 HELIX 10 AB1 SER C 9 LYS C 40 1 32 HELIX 11 AB2 PRO C 41 ASP C 43 5 3 HELIX 12 AB3 ASN C 45 PHE C 58 1 14 HELIX 13 AB4 ILE C 63 GLY C 70 1 8 HELIX 14 AB5 HIS C 73 LYS C 87 1 15 HELIX 15 AB6 THR C 107 GLU C 119 1 13 HELIX 16 AB7 ASN C 126 GLY C 140 1 15 HELIX 17 AB8 ILE C 145 GLY C 157 1 13 HELIX 18 AB9 MET C 161 PHE C 175 1 15 HELIX 19 AC1 SER A 9 LYS A 40 1 32 HELIX 20 AC2 PRO A 41 LEU A 44 5 4 HELIX 21 AC3 ASN A 45 PHE A 58 1 14 HELIX 22 AC4 SER A 62 GLY A 70 1 9 HELIX 23 AC5 HIS A 73 LYS A 87 1 15 HELIX 24 AC6 THR A 107 TYR A 121 1 15 HELIX 25 AC7 ASP A 122 LYS A 125 5 4 HELIX 26 AC8 ASN A 126 TYR A 139 1 14 HELIX 27 AC9 ILE A 145 MET A 161 1 17 HELIX 28 AD1 MET A 161 LYS A 172 1 12 HELIX 29 AD2 SER D 9 LYS D 40 1 32 HELIX 30 AD3 PRO D 41 ASP D 43 5 3 HELIX 31 AD4 ASN D 45 PHE D 58 1 14 HELIX 32 AD5 ILE D 63 VAL D 71 1 9 HELIX 33 AD6 HIS D 73 LYS D 87 1 15 HELIX 34 AD7 THR D 107 THR D 120 1 14 HELIX 35 AD8 ASN D 126 GLY D 140 1 15 HELIX 36 AD9 ILE D 145 GLY D 157 1 13 HELIX 37 AE1 GLY D 157 PHE D 175 1 19 SHEET 1 AA1 3 ALA B 61 SER B 62 0 SHEET 2 AA1 3 TYR B 103 LEU B 106 -1 O ILE B 104 N ALA B 61 SHEET 3 AA1 3 LEU B 90 SER B 93 -1 N SER B 91 O GLU B 105 SHEET 1 AA2 2 ILE B 176 GLN B 178 0 SHEET 2 AA2 2 LYS B 181 VAL B 183 -1 O VAL B 183 N ILE B 176 SHEET 1 AA3 3 ALA C 61 SER C 62 0 SHEET 2 AA3 3 THR C 102 LEU C 106 -1 O ILE C 104 N ALA C 61 SHEET 3 AA3 3 LEU C 90 LYS C 94 -1 N SER C 93 O TYR C 103 SHEET 1 AA4 2 ILE C 176 GLN C 178 0 SHEET 2 AA4 2 LYS C 181 VAL C 183 -1 O VAL C 183 N ILE C 176 SHEET 1 AA5 2 LEU A 90 LYS A 94 0 SHEET 2 AA5 2 THR A 102 LEU A 106 -1 O TYR A 103 N SER A 93 SHEET 1 AA6 2 ILE A 176 GLN A 178 0 SHEET 2 AA6 2 LYS A 181 VAL A 183 -1 O VAL A 183 N ILE A 176 SHEET 1 AA7 3 ALA D 61 SER D 62 0 SHEET 2 AA7 3 TYR D 103 LEU D 106 -1 O ILE D 104 N ALA D 61 SHEET 3 AA7 3 LEU D 90 SER D 93 -1 N SER D 91 O GLU D 105 SHEET 1 AA8 2 ILE D 176 GLN D 178 0 SHEET 2 AA8 2 LYS D 181 VAL D 183 -1 O VAL D 183 N ILE D 176 CRYST1 88.205 100.147 96.606 90.00 112.34 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011337 0.000000 0.004658 0.00000 SCALE2 0.000000 0.009985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011191 0.00000 TER 470 DT I 23 TER 939 DT J 23 TER 2424 LYS B 184 TER 3909 LYS C 184 TER 5394 LYS A 184 TER 6879 LYS D 184 TER 7309 DT E 23 TER 7471 DT G 23 TER 7941 DT F 23 TER 8410 DT H 23 MASTER 418 0 0 37 19 0 0 6 8400 10 0 75 END