HEADER VIRUS 23-MAY-24 9FFG TITLE EMPTY CAPSID OF RHODOBACTER MICROVIRUS EBOR COMPUTED WITH I4 SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES; COMPND 5 OTHER_DETAILS: EBOR VARIANT S120 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 STRAIN: B10; SOURCE 5 ATCC: 33303 KEYWDS SSDNA VIRUS, MICROVIRIDAE, TAINAVIRINAE, ALPHAPROTEOBACTERIA, KEYWDS 2 RHODOBACTER CAPSULATUS, AQUATIC VIRUS, JELLY-ROLL FOLD, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR P.BARDY,C.I.W.MACDONALD,H.T.JENKINS,L.BYROM,M.CHECHIK,S.J.HART, AUTHOR 2 J.P.TURKENBURG,J.N.BLAZA,P.C.M.FOGG,A.A.ANTSON REVDAT 2 10-JUL-24 9FFG 1 JRNL REVDAT 1 12-JUN-24 9FFG 0 JRNL AUTH P.BARDY,C.I.W.MACDONALD,P.C.KIRCHBERGER,H.T.JENKINS,T.BOTKA, JRNL AUTH 2 L.BYROM,N.T.B.ALIM,D.A.K.TRAORE,H.C.KONIG,T.R.NICHOLAS, JRNL AUTH 3 M.CHECHIK,S.J.HART,J.P.TURKENBURG,J.N.BLAZA,J.T.BEATTY, JRNL AUTH 4 P.C.M.FOGG,A.A.ANTSON JRNL TITL A STARGATE MECHANISM OF MICROVIRIDAE GENOME DELIVERY JRNL TITL 2 UNVEILED BY CRYOGENIC ELECTRON TOMOGRAPHY. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 38915634 JRNL DOI 10.1101/2024.06.11.598214 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, COOT, PHENIX, REMARK 3 RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 1984 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9FFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292138147. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RHODOBACTER PHAGE EBOR REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT TIME 2 SEC, BLOT FORCE 0, REMARK 245 WAIT TIME 8 SEC REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.75 REMARK 245 SAMPLE DETAILS : PURIFIED FROM RHODOBACTER REMARK 245 CAPSULATUS STRAIN B10 BY SUCROSE ULTRACENTRIFUGATION REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1099 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 -0.809017 -0.500000 0.309017 307.20001 REMARK 350 BIOMT3 2 0.500000 -0.309017 0.809017 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.309017 -0.809017 0.500000 248.53003 REMARK 350 BIOMT2 3 0.809017 -0.500000 -0.309017 153.60001 REMARK 350 BIOMT3 3 0.500000 0.309017 0.809017 -94.93002 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 307.20001 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 307.20001 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 5 0.309017 -0.809017 -0.500000 307.20001 REMARK 350 BIOMT2 5 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 -0.309017 0.809017 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 7 0.309017 0.809017 -0.500000 58.66998 REMARK 350 BIOMT2 7 -0.809017 0.500000 0.309017 153.60001 REMARK 350 BIOMT3 7 0.500000 0.309017 0.809017 -94.93002 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 8 0.809017 0.500000 0.309017 -94.93002 REMARK 350 BIOMT2 8 -0.500000 0.309017 0.809017 58.66998 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 9 -0.500000 0.309017 0.809017 58.66998 REMARK 350 BIOMT2 9 0.309017 -0.809017 0.500000 153.60001 REMARK 350 BIOMT3 9 0.809017 0.500000 0.309017 -94.93002 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 10 0.309017 -0.809017 0.500000 153.60001 REMARK 350 BIOMT2 10 0.809017 0.500000 0.309017 -94.93002 REMARK 350 BIOMT3 10 -0.500000 0.309017 0.809017 58.66998 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 11 -0.809017 -0.500000 0.309017 307.20001 REMARK 350 BIOMT2 11 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 11 -0.309017 0.809017 0.500000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 12 0.809017 -0.500000 -0.309017 153.60001 REMARK 350 BIOMT2 12 0.500000 0.309017 0.809017 -94.93002 REMARK 350 BIOMT3 12 -0.309017 -0.809017 0.500000 248.53003 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 13 1.000000 0.000000 0.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 14 0.500000 0.309017 0.809017 -94.93002 REMARK 350 BIOMT2 14 -0.309017 -0.809017 0.500000 248.53003 REMARK 350 BIOMT3 14 0.809017 -0.500000 -0.309017 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 15 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 15 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 15 -0.809017 -0.500000 0.309017 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 16 -0.500000 -0.309017 0.809017 153.60001 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -94.93002 REMARK 350 BIOMT3 16 -0.809017 0.500000 -0.309017 248.53003 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 17 0.809017 -0.500000 0.309017 58.66998 REMARK 350 BIOMT2 17 -0.500000 -0.309017 0.809017 153.60001 REMARK 350 BIOMT3 17 -0.309017 -0.809017 -0.500000 402.13004 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 18 0.309017 0.809017 0.500000 -94.93002 REMARK 350 BIOMT2 18 0.809017 -0.500000 0.309017 58.66998 REMARK 350 BIOMT3 18 0.500000 0.309017 -0.809017 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 19 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 19 0.309017 -0.809017 -0.500000 307.20001 REMARK 350 BIOMT3 19 0.809017 0.500000 -0.309017 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 20 0.500000 0.309017 0.809017 -94.93002 REMARK 350 BIOMT2 20 0.309017 0.809017 -0.500000 58.66998 REMARK 350 BIOMT3 20 -0.809017 0.500000 0.309017 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 -1.000000 0.000000 0.000000 307.20001 REMARK 350 BIOMT3 21 0.000000 -1.000000 0.000000 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 58.66998 REMARK 350 BIOMT2 22 -0.309017 0.809017 -0.500000 153.60001 REMARK 350 BIOMT3 22 -0.809017 -0.500000 -0.309017 402.13004 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 23 0.309017 -0.809017 0.500000 153.60001 REMARK 350 BIOMT2 23 -0.809017 -0.500000 -0.309017 402.13004 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 248.53003 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 24 0.809017 0.500000 0.309017 -94.93002 REMARK 350 BIOMT2 24 0.500000 -0.309017 -0.809017 248.53003 REMARK 350 BIOMT3 24 -0.309017 0.809017 -0.500000 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 25 0.809017 -0.500000 0.309017 58.66998 REMARK 350 BIOMT2 25 0.500000 0.309017 -0.809017 153.60001 REMARK 350 BIOMT3 25 0.309017 0.809017 0.500000 -94.93002 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 26 0.309017 0.809017 0.500000 -94.93002 REMARK 350 BIOMT2 26 -0.809017 0.500000 -0.309017 248.53003 REMARK 350 BIOMT3 26 -0.500000 -0.309017 0.809017 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 27 -0.500000 -0.309017 0.809017 153.60001 REMARK 350 BIOMT2 27 -0.309017 -0.809017 -0.500000 402.13004 REMARK 350 BIOMT3 27 0.809017 -0.500000 0.309017 58.66998 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 28 -0.809017 0.500000 0.309017 153.60001 REMARK 350 BIOMT2 28 -0.500000 -0.309017 -0.809017 402.13004 REMARK 350 BIOMT3 28 -0.309017 -0.809017 0.500000 248.53003 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 29 0.000000 -1.000000 0.000000 307.20001 REMARK 350 BIOMT2 29 0.000000 0.000000 -1.000000 307.20001 REMARK 350 BIOMT3 29 1.000000 0.000000 0.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 30 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 30 -0.500000 0.309017 -0.809017 307.20001 REMARK 350 BIOMT3 30 -0.309017 0.809017 0.500000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 307.20001 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 32 0.309017 -0.809017 -0.500000 307.20001 REMARK 350 BIOMT2 32 -0.809017 -0.500000 0.309017 307.20001 REMARK 350 BIOMT3 32 -0.500000 0.309017 -0.809017 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 33 0.309017 0.809017 -0.500000 58.66998 REMARK 350 BIOMT2 33 0.809017 -0.500000 -0.309017 153.60001 REMARK 350 BIOMT3 33 -0.500000 -0.309017 -0.809017 402.13004 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 34 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 34 0.000000 -1.000000 0.000000 307.20001 REMARK 350 BIOMT3 34 0.000000 0.000000 -1.000000 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 35 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 35 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 35 -0.500000 0.309017 -0.809017 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 36 -0.309017 -0.809017 0.500000 248.53003 REMARK 350 BIOMT2 36 -0.809017 0.500000 0.309017 153.60001 REMARK 350 BIOMT3 36 -0.500000 -0.309017 -0.809017 402.13004 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 37 -0.809017 -0.500000 -0.309017 402.13004 REMARK 350 BIOMT2 37 -0.500000 0.309017 0.809017 58.66998 REMARK 350 BIOMT3 37 -0.309017 0.809017 -0.500000 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 38 0.500000 -0.309017 -0.809017 248.53003 REMARK 350 BIOMT2 38 0.309017 -0.809017 0.500000 153.60001 REMARK 350 BIOMT3 38 -0.809017 -0.500000 -0.309017 402.13004 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 39 -0.309017 0.809017 -0.500000 153.60001 REMARK 350 BIOMT2 39 0.809017 0.500000 0.309017 -94.93002 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 248.53003 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 40 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 40 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 40 0.309017 -0.809017 -0.500000 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 41 -0.809017 0.500000 0.309017 153.60001 REMARK 350 BIOMT2 41 0.500000 0.309017 0.809017 -94.93002 REMARK 350 BIOMT3 41 0.309017 0.809017 -0.500000 58.66998 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 42 0.000000 -1.000000 0.000000 307.20001 REMARK 350 BIOMT2 42 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 42 -1.000000 0.000000 0.000000 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 43 -0.500000 -0.309017 -0.809017 402.13004 REMARK 350 BIOMT2 43 -0.309017 -0.809017 0.500000 248.53003 REMARK 350 BIOMT3 43 -0.809017 0.500000 0.309017 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 44 0.000000 0.000000 -1.000000 307.20001 REMARK 350 BIOMT2 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 44 0.000000 -1.000000 0.000000 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 45 -0.500000 0.309017 -0.809017 307.20001 REMARK 350 BIOMT2 45 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 45 0.809017 0.500000 -0.309017 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 46 0.500000 0.309017 -0.809017 153.60001 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -94.93002 REMARK 350 BIOMT3 46 0.809017 -0.500000 0.309017 58.66998 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 47 -0.809017 0.500000 -0.309017 248.53003 REMARK 350 BIOMT2 47 -0.500000 -0.309017 0.809017 153.60001 REMARK 350 BIOMT3 47 0.309017 0.809017 0.500000 -94.93002 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 48 -0.309017 -0.809017 -0.500000 402.13004 REMARK 350 BIOMT2 48 0.809017 -0.500000 0.309017 58.66998 REMARK 350 BIOMT3 48 -0.500000 -0.309017 0.809017 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 49 -0.500000 0.309017 -0.809017 307.20001 REMARK 350 BIOMT2 49 0.309017 -0.809017 -0.500000 307.20001 REMARK 350 BIOMT3 49 -0.809017 -0.500000 0.309017 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 50 -0.500000 -0.309017 -0.809017 402.13004 REMARK 350 BIOMT2 50 0.309017 0.809017 -0.500000 58.66998 REMARK 350 BIOMT3 50 0.809017 -0.500000 -0.309017 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 307.20001 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 307.20001 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 52 0.500000 -0.309017 -0.809017 248.53003 REMARK 350 BIOMT2 52 -0.309017 0.809017 -0.500000 153.60001 REMARK 350 BIOMT3 52 0.809017 0.500000 0.309017 -94.93002 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 53 -0.309017 0.809017 -0.500000 153.60001 REMARK 350 BIOMT2 53 -0.809017 -0.500000 -0.309017 402.13004 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 58.66998 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 54 -0.809017 -0.500000 -0.309017 402.13004 REMARK 350 BIOMT2 54 0.500000 -0.309017 -0.809017 248.53003 REMARK 350 BIOMT3 54 0.309017 -0.809017 0.500000 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 55 -0.809017 0.500000 -0.309017 248.53003 REMARK 350 BIOMT2 55 0.500000 0.309017 -0.809017 153.60001 REMARK 350 BIOMT3 55 -0.309017 -0.809017 -0.500000 402.13004 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 56 -0.309017 -0.809017 -0.500000 402.13004 REMARK 350 BIOMT2 56 -0.809017 0.500000 -0.309017 248.53003 REMARK 350 BIOMT3 56 0.500000 0.309017 -0.809017 153.60001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 57 -0.809017 -0.500000 0.309017 307.20001 REMARK 350 BIOMT2 57 -0.500000 0.309017 -0.809017 307.20001 REMARK 350 BIOMT3 57 0.309017 -0.809017 -0.500000 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 58 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 0.000000 -1.000000 307.20001 REMARK 350 BIOMT3 58 -1.000000 0.000000 0.000000 307.20001 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 59 0.809017 -0.500000 -0.309017 153.60001 REMARK 350 BIOMT2 59 -0.500000 -0.309017 -0.809017 402.13004 REMARK 350 BIOMT3 59 0.309017 0.809017 -0.500000 58.66998 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 60 0.500000 0.309017 -0.809017 153.60001 REMARK 350 BIOMT2 60 -0.309017 -0.809017 -0.500000 402.13004 REMARK 350 BIOMT3 60 -0.809017 0.500000 -0.309017 248.53003 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 184 REMARK 465 GLY A 185 REMARK 465 ALA A 186 REMARK 465 VAL A 187 REMARK 465 GLN A 188 REMARK 465 LEU A 189 REMARK 465 SER A 190 REMARK 465 MET A 191 REMARK 465 PRO A 192 REMARK 465 ASP A 193 REMARK 465 MET A 194 REMARK 465 ARG A 195 REMARK 465 LEU A 196 REMARK 465 PRO A 197 REMARK 465 VAL A 198 REMARK 465 ALA A 199 REMARK 465 SER A 200 REMARK 465 ASP A 201 REMARK 465 ALA A 202 REMARK 465 GLU A 203 REMARK 465 LYS A 204 REMARK 465 ALA A 205 REMARK 465 VAL A 206 REMARK 465 THR A 207 REMARK 465 ALA A 208 REMARK 465 PRO A 209 REMARK 465 LEU A 210 REMARK 465 THR A 211 REMARK 465 VAL A 212 REMARK 465 LYS A 213 REMARK 465 ARG A 214 REMARK 465 GLY A 215 REMARK 465 ASN A 216 REMARK 465 GLU A 217 REMARK 465 ASN A 218 REMARK 465 ARG A 219 REMARK 465 ARG A 220 REMARK 465 LEU A 221 REMARK 465 ASP A 222 REMARK 465 ALA A 223 REMARK 465 GLY A 224 REMARK 465 ILE A 225 REMARK 465 SER A 226 REMARK 465 ARG A 227 REMARK 465 LEU A 228 REMARK 465 ALA A 229 REMARK 465 ALA A 230 REMARK 465 ALA A 231 REMARK 465 GLU A 232 REMARK 465 VAL A 233 REMARK 465 ALA A 234 REMARK 465 ALA A 235 REMARK 465 ALA A 236 REMARK 465 THR A 237 REMARK 465 ASP A 238 REMARK 465 ALA A 239 REMARK 465 ALA A 240 REMARK 465 LEU A 241 REMARK 465 TYR A 242 REMARK 465 ALA A 243 REMARK 465 VAL A 244 REMARK 465 PHE A 245 REMARK 465 GLY A 246 REMARK 465 GLY A 247 REMARK 465 ARG A 248 REMARK 465 GLU A 249 REMARK 465 ALA A 250 REMARK 465 GLY A 251 REMARK 465 ASN A 252 REMARK 465 VAL A 253 REMARK 465 SER A 254 REMARK 465 ASP A 511 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 155 39.72 -94.98 REMARK 500 PHE A 258 -5.51 76.39 REMARK 500 GLN A 262 -6.26 75.50 REMARK 500 PRO A 279 -176.75 -67.77 REMARK 500 GLU A 280 19.93 51.57 REMARK 500 ALA A 395 170.11 -58.22 REMARK 500 ARG A 396 -5.96 77.30 REMARK 500 LEU A 450 179.49 63.25 REMARK 500 SER A 451 -70.86 63.48 REMARK 500 THR A 456 118.32 -161.09 REMARK 500 GLU A 504 -1.58 70.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50360 RELATED DB: EMDB REMARK 900 EBOR NATIVE VIRION ATTACHED TO THE OUTER MEMBRANE VESICLE REMARK 900 RELATED ID: EMD-50359 RELATED DB: EMDB REMARK 900 EBOR NATIVE VIRION ATTACHED TO THE HOST CELL SOLVED BY SINGLE REMARK 900 PARTICLE ANALYSIS REMARK 900 RELATED ID: EMD-50361 RELATED DB: EMDB REMARK 900 EBOR NATIVE VIRION ATTACHED TO THE HOST CELL SOLVED BY SUBTOMOGRAM REMARK 900 AVERAGING REMARK 900 RELATED ID: EMD-50356 RELATED DB: EMDB REMARK 900 EMPTY CAPSID OF RHODOBACTER MICROVIRUS EBOR COMPUTED WITH I4 REMARK 900 SYMMETRY DBREF 9FFG A 1 511 PDB 9FFG 9FFG 1 511 SEQRES 1 A 511 MET SER TYR GLN THR LYS ARG ASN VAL ARG ARG GLU ALA SEQRES 2 A 511 ARG THR LEU MET GLY ARG PHE LYS ALA GLY LYS LEU ALA SEQRES 3 A 511 PRO VAL MET ALA VAL PRO VAL LYS GLY SER GLU GLY GLY SEQRES 4 A 511 MET LEU SER GLN SER VAL SER PHE GLU LEU ASP PRO ILE SEQRES 5 A 511 ALA GLY ARG MET ALA THR PRO ILE THR ALA GLU MET CYS SEQRES 6 A 511 ALA VAL PHE VAL PRO VAL GLN ALA CYS ASP ALA LEU LYS SEQRES 7 A 511 ASN PRO GLU ALA ASP TYR ALA GLY MET THR GLU ILE VAL SEQRES 8 A 511 ARG GLU LYS LEU LEU SER GLY ASN PRO LEU PHE VAL LEU SEQRES 9 A 511 GLU PRO GLU THR ASP VAL SER LYS ARG CYS GLY VAL ASN SEQRES 10 A 511 PRO ARG SER ASN ASN GLY LEU MET ARG VAL ASN GLU ILE SEQRES 11 A 511 VAL ARG LEU ALA HIS ASN CYS ALA VAL ASN PHE LEU ARG SEQRES 12 A 511 ARG ARG ARG TYR VAL ASP ALA VAL GLN LEU THR ALA ALA SEQRES 13 A 511 ASN HIS SER THR THR PRO ALA ILE LEU SER GLN THR VAL SEQRES 14 A 511 LEU ASP ARG PHE ASN GLY ALA LEU ASP PRO ASP PRO ASN SEQRES 15 A 511 VAL ASN GLY ALA VAL GLN LEU SER MET PRO ASP MET ARG SEQRES 16 A 511 LEU PRO VAL ALA SER ASP ALA GLU LYS ALA VAL THR ALA SEQRES 17 A 511 PRO LEU THR VAL LYS ARG GLY ASN GLU ASN ARG ARG LEU SEQRES 18 A 511 ASP ALA GLY ILE SER ARG LEU ALA ALA ALA GLU VAL ALA SEQRES 19 A 511 ALA ALA THR ASP ALA ALA LEU TYR ALA VAL PHE GLY GLY SEQRES 20 A 511 ARG GLU ALA GLY ASN VAL SER LEU THR ASP PHE TYR ASN SEQRES 21 A 511 ALA GLN LYS MET ASP GLU LEU THR ARG VAL MET ARG LYS SEQRES 22 A 511 ILE CYS ASP ASP ASN PRO GLU TYR GLY GLU GLU MET VAL SEQRES 23 A 511 LEU ARG TRP ALA HIS GLY LEU SER VAL ASP PRO GLY ARG SEQRES 24 A 511 VAL PRO PHE LEU LEU ALA GLU LYS SER VAL VAL LEU GLY SEQRES 25 A 511 ARG GLN ILE ILE GLY ALA THR ASP THR ALA GLY VAL GLU SEQRES 26 A 511 ASP GLY VAL LYS ARG SER ASP MET ALA ALA GLN LEU SER SEQRES 27 A 511 PHE THR VAL PRO ILE PRO THR THR GLU LEU GLY GLY ILE SEQRES 28 A 511 ILE VAL THR PHE ALA CYS ILE LYS PRO ASP GLU THR LEU SEQRES 29 A 511 SER SER GLN PRO HIS PRO ILE LEU ALA ASP HIS TRP ARG SEQRES 30 A 511 LEU ASP ASN PHE VAL ALA ASP GLU LEU ALA LEU ASP PRO SEQRES 31 A 511 GLN PRO VAL MET ALA ARG GLU LEU ASP TYR LYS VAL ALA SEQRES 32 A 511 GLN ALA ASN GLU THR THR VAL VAL PHE TYR THR GLY LEU SEQRES 33 A 511 ASN GLU LEU LYS LYS THR TYR VAL SER TYR GLY LEU CYS SEQRES 34 A 511 ARG ALA LEU ASP PRO ASN THR VAL GLU SER LYS ASN ALA SEQRES 35 A 511 VAL TRP GLN LEU GLU VAL PRO LEU SER VAL THR PRO GLU SEQRES 36 A 511 THR VAL LEU TYR PRO ALA ASP LEU PRO GLN TYR PRO PHE SEQRES 37 A 511 ALA ASP GLN GLN ALA GLU VAL CYS THR TYR VAL VAL GLN SEQRES 38 A 511 SER THR ALA VAL MET PRO THR PRO MET ILE PHE GLY PRO SEQRES 39 A 511 SER PRO VAL GLU GLN LEU ALA VAL ILE GLU THR GLU ASP SEQRES 40 A 511 LEU PHE GLU ASP HELIX 1 AA1 VAL A 71 ASN A 79 1 9 HELIX 2 AA2 MET A 87 GLY A 98 1 12 HELIX 3 AA3 THR A 108 CYS A 114 1 7 HELIX 4 AA4 GLU A 129 TYR A 147 1 19 HELIX 5 AA5 THR A 168 PHE A 173 1 6 HELIX 6 AA6 LYS A 263 ASN A 278 1 16 HELIX 7 AA7 GLU A 284 GLY A 292 1 9 HELIX 8 AA8 ASP A 320 GLY A 327 1 8 HELIX 9 AA9 ASN A 380 LEU A 386 1 7 HELIX 10 AB1 GLN A 404 THR A 408 5 5 HELIX 11 AB2 ASN A 417 LYS A 421 5 5 SHEET 1 AA1 4 ASN A 8 GLY A 18 0 SHEET 2 AA1 4 TYR A 478 THR A 488 -1 O VAL A 480 N LEU A 16 SHEET 3 AA1 4 GLY A 39 GLU A 48 -1 N SER A 42 O THR A 483 SHEET 4 AA1 4 ALA A 334 ILE A 343 -1 O ILE A 343 N GLY A 39 SHEET 1 AA2 5 THR A 161 PRO A 162 0 SHEET 2 AA2 5 LYS A 24 VAL A 33 -1 N LEU A 25 O THR A 161 SHEET 3 AA2 5 GLY A 350 LYS A 359 -1 O GLY A 350 N VAL A 33 SHEET 4 AA2 5 THR A 61 PRO A 70 -1 N VAL A 69 O ILE A 351 SHEET 5 AA2 5 PHE A 302 VAL A 310 -1 O LYS A 307 N MET A 64 SHEET 1 AA3 3 ILE A 52 ALA A 53 0 SHEET 2 AA3 3 LYS A 329 ASP A 332 -1 O SER A 331 N ILE A 52 SHEET 3 AA3 3 GLN A 314 GLY A 317 -1 N ILE A 316 O ARG A 330 SHEET 1 AA4 3 LEU A 104 GLU A 105 0 SHEET 2 AA4 3 LEU A 124 ASN A 128 -1 O VAL A 127 N GLU A 105 SHEET 3 AA4 3 ARG A 119 ASN A 121 -1 N ASN A 121 O LEU A 124 SHEET 1 AA5 2 PRO A 392 MET A 394 0 SHEET 2 AA5 2 VAL A 410 TYR A 413 -1 O VAL A 411 N VAL A 393 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000