HEADER VIRUS 23-MAY-24 9FFH TITLE NATIVE CAPSID OF RHODOBACTER MICROVIRUS EBOR COMPUTED WITH I4 SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN; COMPND 3 CHAIN: B; COMPND 4 MUTATION: YES; COMPND 5 OTHER_DETAILS: EBOR VARIANT R120 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS SB 1003; SOURCE 3 ORGANISM_TAXID: 272942; SOURCE 4 STRAIN: SB1003 KEYWDS SSDNA VIRUS, MICROVIRIDAE, TAINAVIRINAE, ALPHAPROTEOBACTERIA, KEYWDS 2 RHODOBACTER CAPSULATUS, AQUATIC VIRUS, JELLY-ROLL FOLD, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR P.BARDY,C.I.W.MACDONALD,H.T.JENKINS,M.CHECHIK,S.J.HART, AUTHOR 2 J.P.TURKENBURG,J.N.BLAZA,P.C.M.FOGG,A.A.ANTSON REVDAT 2 10-JUL-24 9FFH 1 JRNL REVDAT 1 12-JUN-24 9FFH 0 JRNL AUTH P.BARDY,C.I.W.MACDONALD,P.C.KIRCHBERGER,H.T.JENKINS,T.BOTKA, JRNL AUTH 2 L.BYROM,N.T.B.ALIM,D.A.K.TRAORE,H.C.KONIG,T.R.NICHOLAS, JRNL AUTH 3 M.CHECHIK,S.J.HART,J.P.TURKENBURG,J.N.BLAZA,J.T.BEATTY, JRNL AUTH 4 P.C.M.FOGG,A.A.ANTSON JRNL TITL A STARGATE MECHANISM OF MICROVIRIDAE GENOME DELIVERY JRNL TITL 2 UNVEILED BY CRYOGENIC ELECTRON TOMOGRAPHY. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 38915634 JRNL DOI 10.1101/2024.06.11.598214 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, COOT, RELION, REMARK 3 RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 4935 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9FFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292138271. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RHODOBACTER PHAGE EBOR REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT TIME 2 SEC, BLOT FORCE 0, REMARK 245 WAIT TIME 8 SEC REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.75 REMARK 245 SAMPLE DETAILS : PURIFIED FROM RHODOBACTER REMARK 245 CAPSULATUS STRAIN SB1003 BY CSCL ULTRACENTRIFUGATION REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 996 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.138197 0.425325 0.894427 -39.21609 REMARK 350 BIOMT2 2 -0.951057 -0.309017 0.000000 488.17588 REMARK 350 BIOMT3 2 0.276393 -0.850651 0.447214 243.44151 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -0.138197 -0.951057 0.276393 391.57774 REMARK 350 BIOMT2 3 0.425325 -0.309017 -0.850651 374.61796 REMARK 350 BIOMT3 3 0.894427 0.000000 0.447214 -73.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 -0.447214 0.000000 0.894427 119.40186 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 432.00000 REMARK 350 BIOMT3 4 0.894427 0.000000 0.447214 -73.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 5 0.309017 -0.951057 0.000000 354.68054 REMARK 350 BIOMT2 5 0.951057 0.309017 0.000000 -56.17588 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 6 0.861803 0.425325 0.276393 -121.72075 REMARK 350 BIOMT2 6 -0.425325 0.309017 0.850651 57.38204 REMARK 350 BIOMT3 6 0.276393 -0.850651 0.447214 243.44151 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 7 0.361803 0.262866 0.894427 -112.12477 REMARK 350 BIOMT2 7 -0.587785 0.809017 0.000000 168.21394 REMARK 350 BIOMT3 7 -0.723607 -0.525731 0.447214 389.25885 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 8 -0.052786 -0.688191 0.723607 219.75204 REMARK 350 BIOMT2 8 -0.688191 -0.500000 -0.525731 586.20717 REMARK 350 BIOMT3 8 0.723607 -0.525731 -0.447214 269.85699 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 9 0.861803 -0.425325 0.276393 62.01982 REMARK 350 BIOMT2 9 0.425325 0.309017 -0.850651 241.12262 REMARK 350 BIOMT3 9 0.276393 0.850651 0.447214 -124.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 10 0.638197 -0.262866 0.723607 -21.37057 REMARK 350 BIOMT2 10 0.262866 -0.809017 -0.525731 447.52663 REMARK 350 BIOMT3 10 0.723607 0.525731 -0.447214 42.74115 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 11 0.361803 -0.262866 0.894427 1.43315 REMARK 350 BIOMT2 11 0.587785 0.809017 0.000000 -85.70929 REMARK 350 BIOMT3 11 -0.723607 0.525731 0.447214 162.14301 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 12 0.447214 -0.525731 0.723607 76.66072 REMARK 350 BIOMT2 12 -0.850651 0.000000 0.525731 286.18265 REMARK 350 BIOMT3 12 -0.276393 -0.850651 -0.447214 556.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 13 -0.670820 -0.162460 0.723607 239.68946 REMARK 350 BIOMT2 13 -0.688191 0.500000 -0.525731 370.20717 REMARK 350 BIOMT3 13 -0.276393 -0.850651 -0.447214 556.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 14 0.447214 -0.850651 -0.276393 362.84337 REMARK 350 BIOMT2 14 -0.525731 0.000000 -0.850651 513.29849 REMARK 350 BIOMT3 14 0.723607 0.525731 -0.447214 42.74115 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 15 0.670820 0.688191 0.276393 -137.24738 REMARK 350 BIOMT2 15 -0.162460 0.500000 -0.850651 326.83190 REMARK 350 BIOMT3 15 -0.723607 0.525731 0.447214 162.14301 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 16 -0.361803 0.587785 0.723607 10.88885 REMARK 350 BIOMT2 16 0.262866 0.809017 -0.525731 98.03129 REMARK 350 BIOMT3 16 -0.894427 0.000000 -0.447214 505.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 17 0.947214 0.162460 -0.276393 36.01147 REMARK 350 BIOMT2 17 -0.162460 -0.500000 -0.850651 542.83190 REMARK 350 BIOMT3 17 -0.276393 0.850651 -0.447214 188.55849 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 18 -0.309017 -0.951057 0.000000 488.17588 REMARK 350 BIOMT2 18 -0.951057 0.309017 0.000000 354.68054 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 432.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 19 -0.670820 -0.688191 -0.276393 569.24738 REMARK 350 BIOMT2 19 -0.162460 0.500000 -0.850651 326.83190 REMARK 350 BIOMT3 19 0.723607 -0.525731 -0.447214 269.85699 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 20 0.670820 0.162460 -0.723607 192.31054 REMARK 350 BIOMT2 20 -0.688191 0.500000 -0.525731 370.20717 REMARK 350 BIOMT3 20 0.276393 0.850651 0.447214 -124.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 21 -0.447214 0.850651 0.276393 69.15663 REMARK 350 BIOMT2 21 -0.525731 0.000000 -0.850651 513.29849 REMARK 350 BIOMT3 21 -0.723607 -0.525731 0.447214 389.25885 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 22 0.052786 0.688191 -0.723607 212.24796 REMARK 350 BIOMT2 22 -0.688191 -0.500000 -0.525731 586.20717 REMARK 350 BIOMT3 22 -0.723607 0.525731 0.447214 162.14301 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 23 -0.861803 0.425325 -0.276393 369.98018 REMARK 350 BIOMT2 23 0.425325 0.309017 -0.850651 241.12262 REMARK 350 BIOMT3 23 -0.276393 -0.850651 -0.447214 556.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 24 -0.361803 -0.262866 -0.894427 544.12477 REMARK 350 BIOMT2 24 -0.587785 0.809017 0.000000 168.21394 REMARK 350 BIOMT3 24 0.723607 0.525731 -0.447214 42.74115 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 25 0.361803 -0.587785 -0.723607 421.11115 REMARK 350 BIOMT2 25 0.262866 0.809017 -0.525731 98.03129 REMARK 350 BIOMT3 25 0.894427 0.000000 0.447214 -73.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 26 0.309017 0.951057 0.000000 -56.17588 REMARK 350 BIOMT2 26 -0.951057 0.309017 0.000000 354.68054 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 27 -0.947214 -0.162460 0.276393 395.98853 REMARK 350 BIOMT2 27 -0.162460 -0.500000 -0.850651 542.83190 REMARK 350 BIOMT3 27 0.276393 -0.850651 0.447214 243.44151 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 28 -0.809017 0.587785 0.000000 263.78606 REMARK 350 BIOMT2 28 -0.587785 -0.809017 0.000000 517.70929 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 29 -0.447214 -0.525731 -0.723607 582.45513 REMARK 350 BIOMT2 29 0.850651 0.000000 -0.525731 145.81735 REMARK 350 BIOMT3 29 0.276393 -0.850651 0.447214 243.44151 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 30 0.361803 0.587785 -0.723607 167.18792 REMARK 350 BIOMT2 30 -0.262866 0.809017 0.525731 -15.52663 REMARK 350 BIOMT3 30 0.894427 0.000000 0.447214 -73.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 31 0.447214 0.000000 -0.894427 312.59814 REMARK 350 BIOMT2 31 0.000000 -1.000000 0.000000 432.00000 REMARK 350 BIOMT3 31 -0.894427 0.000000 -0.447214 505.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 32 -0.309017 0.951057 0.000000 77.31946 REMARK 350 BIOMT2 32 0.951057 0.309017 0.000000 -56.17588 REMARK 350 BIOMT3 32 0.000000 0.000000 -1.000000 432.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 33 -0.861803 -0.425325 -0.276393 553.72075 REMARK 350 BIOMT2 33 -0.425325 0.309017 0.850651 57.38204 REMARK 350 BIOMT3 33 -0.276393 0.850651 -0.447214 188.55849 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 34 -1.000000 0.000000 0.000000 432.00000 REMARK 350 BIOMT2 34 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 34 0.000000 0.000000 -1.000000 432.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 35 0.138197 -0.425325 -0.894427 471.21609 REMARK 350 BIOMT2 35 -0.951057 -0.309017 0.000000 488.17588 REMARK 350 BIOMT3 35 -0.276393 0.850651 -0.447214 188.55849 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 36 0.138197 0.951057 -0.276393 40.42226 REMARK 350 BIOMT2 36 0.425325 -0.309017 -0.850651 374.61796 REMARK 350 BIOMT3 36 -0.894427 0.000000 -0.447214 505.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 37 0.809017 0.587785 0.000000 -85.70929 REMARK 350 BIOMT2 37 0.587785 -0.809017 0.000000 263.78606 REMARK 350 BIOMT3 37 0.000000 0.000000 -1.000000 432.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 38 -0.670820 0.162460 0.723607 169.50681 REMARK 350 BIOMT2 38 0.688191 0.500000 0.525731 -154.20717 REMARK 350 BIOMT3 38 -0.276393 0.850651 -0.447214 188.55849 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 39 0.138197 -0.951057 -0.276393 451.27867 REMARK 350 BIOMT2 39 -0.425325 -0.309017 0.850651 190.87738 REMARK 350 BIOMT3 39 -0.894427 0.000000 -0.447214 505.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 40 -0.361803 -0.587785 0.723607 264.81208 REMARK 350 BIOMT2 40 -0.262866 0.809017 0.525731 -15.52663 REMARK 350 BIOMT3 40 -0.894427 0.000000 -0.447214 505.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 41 0.809017 -0.587785 0.000000 168.21394 REMARK 350 BIOMT2 41 -0.587785 -0.809017 0.000000 517.70929 REMARK 350 BIOMT3 41 0.000000 0.000000 -1.000000 432.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 42 0.447214 0.525731 0.723607 -150.45513 REMARK 350 BIOMT2 42 0.850651 0.000000 -0.525731 145.81735 REMARK 350 BIOMT3 42 -0.276393 0.850651 -0.447214 188.55849 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 43 -0.052786 0.688191 0.723607 -77.54645 REMARK 350 BIOMT2 43 0.688191 -0.500000 0.525731 61.79283 REMARK 350 BIOMT3 43 0.723607 0.525731 -0.447214 42.74115 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 44 -0.447214 -0.850651 0.276393 436.63778 REMARK 350 BIOMT2 44 0.525731 0.000000 0.850651 -81.29849 REMARK 350 BIOMT3 44 -0.723607 0.525731 0.447214 162.14301 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 45 0.947214 -0.162460 -0.276393 106.19412 REMARK 350 BIOMT2 45 0.162460 -0.500000 0.850651 105.16810 REMARK 350 BIOMT3 45 -0.276393 -0.850651 -0.447214 556.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 46 0.670820 -0.688191 0.276393 160.05111 REMARK 350 BIOMT2 46 0.162460 0.500000 0.850651 -110.83190 REMARK 350 BIOMT3 46 -0.723607 -0.525731 0.447214 389.25885 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 47 0.638197 0.262866 0.723607 -134.92849 REMARK 350 BIOMT2 47 -0.262866 -0.809017 0.525731 333.96871 REMARK 350 BIOMT3 47 0.723607 -0.525731 -0.447214 269.85699 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 48 -0.138197 -0.425325 0.894427 144.52448 REMARK 350 BIOMT2 48 0.951057 -0.309017 0.000000 77.31946 REMARK 350 BIOMT3 48 0.276393 0.850651 0.447214 -124.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 49 -0.947214 0.162460 0.276393 325.80588 REMARK 350 BIOMT2 49 0.162460 -0.500000 0.850651 105.16810 REMARK 350 BIOMT3 49 0.276393 0.850651 0.447214 -124.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 50 0.052786 -0.688191 -0.723607 509.54645 REMARK 350 BIOMT2 50 0.688191 -0.500000 0.525731 61.79283 REMARK 350 BIOMT3 50 -0.723607 -0.525731 0.447214 389.25885 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 51 0.447214 0.850651 -0.276393 -4.63778 REMARK 350 BIOMT2 51 0.525731 0.000000 0.850651 -81.29849 REMARK 350 BIOMT3 51 0.723607 -0.525731 -0.447214 269.85699 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 52 0.670820 -0.162460 -0.723607 262.49319 REMARK 350 BIOMT2 52 0.688191 0.500000 0.525731 -154.20717 REMARK 350 BIOMT3 52 0.276393 -0.850651 0.447214 243.44151 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 53 -0.138197 0.951057 0.276393 -19.27867 REMARK 350 BIOMT2 53 -0.425325 -0.309017 0.850651 190.87738 REMARK 350 BIOMT3 53 0.894427 0.000000 0.447214 -73.79441 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 54 -0.809017 -0.587785 0.000000 517.70929 REMARK 350 BIOMT2 54 0.587785 -0.809017 0.000000 263.78606 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 55 -0.638197 -0.262866 -0.723607 566.92849 REMARK 350 BIOMT2 55 -0.262866 -0.809017 0.525731 333.96871 REMARK 350 BIOMT3 55 -0.723607 0.525731 0.447214 162.14301 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 56 0.138197 0.425325 -0.894427 287.47552 REMARK 350 BIOMT2 56 0.951057 -0.309017 0.000000 77.31946 REMARK 350 BIOMT3 56 -0.276393 -0.850651 -0.447214 556.03964 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 57 -0.670820 0.688191 -0.276393 271.94889 REMARK 350 BIOMT2 57 0.162460 0.500000 0.850651 -110.83190 REMARK 350 BIOMT3 57 0.723607 0.525731 -0.447214 42.74115 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 58 -0.361803 0.262866 -0.894427 430.56685 REMARK 350 BIOMT2 58 0.587785 0.809017 0.000000 -85.70929 REMARK 350 BIOMT3 58 0.723607 -0.525731 -0.447214 269.85699 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 59 -0.638197 0.262866 -0.723607 453.37057 REMARK 350 BIOMT2 59 0.262866 -0.809017 -0.525731 447.52663 REMARK 350 BIOMT3 59 -0.723607 -0.525731 0.447214 389.25885 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 60 -0.447214 0.525731 -0.723607 355.33928 REMARK 350 BIOMT2 60 -0.850651 0.000000 0.525731 286.18265 REMARK 350 BIOMT3 60 0.276393 0.850651 0.447214 -124.03964 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 193 REMARK 465 MET B 194 REMARK 465 ARG B 195 REMARK 465 LEU B 196 REMARK 465 PRO B 197 REMARK 465 VAL B 198 REMARK 465 ALA B 199 REMARK 465 SER B 200 REMARK 465 ASP B 201 REMARK 465 ALA B 202 REMARK 465 GLU B 203 REMARK 465 LYS B 204 REMARK 465 ALA B 205 REMARK 465 VAL B 206 REMARK 465 THR B 207 REMARK 465 ALA B 208 REMARK 465 PRO B 209 REMARK 465 LEU B 210 REMARK 465 THR B 211 REMARK 465 VAL B 212 REMARK 465 LYS B 213 REMARK 465 ARG B 214 REMARK 465 GLY B 215 REMARK 465 ASN B 216 REMARK 465 GLU B 217 REMARK 465 ASN B 218 REMARK 465 ARG B 219 REMARK 465 ARG B 220 REMARK 465 LEU B 221 REMARK 465 ASP B 222 REMARK 465 ALA B 223 REMARK 465 GLY B 224 REMARK 465 ILE B 225 REMARK 465 SER B 226 REMARK 465 ARG B 227 REMARK 465 LEU B 228 REMARK 465 ALA B 229 REMARK 465 ALA B 230 REMARK 465 ALA B 231 REMARK 465 GLU B 232 REMARK 465 VAL B 233 REMARK 465 ALA B 234 REMARK 465 ALA B 235 REMARK 465 ALA B 236 REMARK 465 THR B 237 REMARK 465 ASP B 238 REMARK 465 ALA B 239 REMARK 465 ALA B 240 REMARK 465 LEU B 241 REMARK 465 TYR B 242 REMARK 465 ALA B 243 REMARK 465 VAL B 244 REMARK 465 PHE B 245 REMARK 465 GLY B 246 REMARK 465 GLY B 247 REMARK 465 ARG B 248 REMARK 465 GLU B 249 REMARK 465 ASP B 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 191 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 501 OG1 THR B 505 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 158 33.34 -140.18 REMARK 500 MET B 191 70.20 -157.56 REMARK 500 SER B 254 149.08 70.37 REMARK 500 THR B 256 -45.00 175.33 REMARK 500 PHE B 258 -11.95 75.93 REMARK 500 GLN B 262 -5.01 76.88 REMARK 500 LYS B 401 33.65 -97.35 REMARK 500 LEU B 419 -2.87 78.98 REMARK 500 LEU B 450 -173.84 65.59 REMARK 500 SER B 451 -74.93 60.15 REMARK 500 PHE B 492 -164.66 58.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50356 RELATED DB: EMDB REMARK 900 EMPTY VIRION MAP REMARK 900 RELATED ID: 9FFG RELATED DB: PDB REMARK 900 MODEL OF THE MAJOR CAPSID PROTEIN OF EBOR BUILT INTO THE EMPTY REMARK 900 VIRION REMARK 900 RELATED ID: EMD-50360 RELATED DB: EMDB REMARK 900 EBOR NATIVE VIRION ATTACHED TO THE OUTER MEMBRANE VESICLE REMARK 900 RELATED ID: EMD-50359 RELATED DB: EMDB REMARK 900 EBOR NATIVE VIRION ATTACHED TO THE HOST CELL SOLVED BY SINGLE REMARK 900 PARTICLE ANALYSIS REMARK 900 RELATED ID: EMD-50361 RELATED DB: EMDB REMARK 900 EBOR NATIVE VIRION ATTACHED TO THE HOST CELL SOLVED BY SUBTOMOGRAM REMARK 900 AVERAGING REMARK 900 RELATED ID: EMD-50358 RELATED DB: EMDB REMARK 900 IN VITRO-INDUCED GENOME-RELEASING VIRION OF EBOR REMARK 900 RELATED ID: EMD-50357 RELATED DB: EMDB REMARK 900 NATIVE CAPSID OF RHODOBACTER MICROVIRUS EBOR COMPUTED WITH I4 REMARK 900 SYMMETRY DBREF 9FFH B 1 511 PDB 9FFH 9FFH 1 511 SEQRES 1 B 511 MET SER TYR GLN THR LYS ARG ASN VAL ARG ARG GLU ALA SEQRES 2 B 511 ARG THR LEU MET GLY ARG PHE LYS ALA GLY LYS LEU ALA SEQRES 3 B 511 PRO VAL MET ALA VAL PRO VAL LYS GLY SER GLU GLY GLY SEQRES 4 B 511 MET LEU SER GLN SER VAL SER PHE GLU LEU ASP PRO ILE SEQRES 5 B 511 ALA GLY ARG MET ALA THR PRO ILE THR ALA GLU MET CYS SEQRES 6 B 511 ALA VAL PHE VAL PRO VAL GLN ALA CYS ASP ALA LEU LYS SEQRES 7 B 511 ASN PRO GLU ALA ASP TYR ALA GLY MET THR GLU ILE VAL SEQRES 8 B 511 ARG GLU LYS LEU LEU SER GLY ASN PRO LEU PHE VAL LEU SEQRES 9 B 511 GLU PRO GLU THR ASP VAL SER LYS ARG CYS GLY VAL ASN SEQRES 10 B 511 PRO ARG ARG ASN ASN GLY LEU MET ARG VAL ASN GLU ILE SEQRES 11 B 511 VAL ARG LEU ALA HIS ASN CYS ALA VAL ASN PHE LEU ARG SEQRES 12 B 511 ARG ARG ARG TYR VAL ASP ALA VAL GLN LEU THR ALA ALA SEQRES 13 B 511 ASN HIS SER THR THR PRO ALA ILE LEU SER GLN THR VAL SEQRES 14 B 511 LEU ASP ARG PHE ASN GLY ALA LEU ASP PRO ASP PRO ASN SEQRES 15 B 511 VAL ASN GLY ALA VAL GLN LEU SER MET PRO ASP MET ARG SEQRES 16 B 511 LEU PRO VAL ALA SER ASP ALA GLU LYS ALA VAL THR ALA SEQRES 17 B 511 PRO LEU THR VAL LYS ARG GLY ASN GLU ASN ARG ARG LEU SEQRES 18 B 511 ASP ALA GLY ILE SER ARG LEU ALA ALA ALA GLU VAL ALA SEQRES 19 B 511 ALA ALA THR ASP ALA ALA LEU TYR ALA VAL PHE GLY GLY SEQRES 20 B 511 ARG GLU ALA GLY ASN VAL SER LEU THR ASP PHE TYR ASN SEQRES 21 B 511 ALA GLN LYS MET ASP GLU LEU THR ARG VAL MET ARG LYS SEQRES 22 B 511 ILE CYS ASP ASP ASN PRO GLU TYR GLY GLU GLU MET VAL SEQRES 23 B 511 LEU ARG TRP ALA HIS GLY LEU SER VAL ASP PRO GLY ARG SEQRES 24 B 511 VAL PRO PHE LEU LEU ALA GLU LYS SER VAL VAL LEU GLY SEQRES 25 B 511 ARG GLN ILE ILE GLY ALA THR ASP THR ALA GLY VAL GLU SEQRES 26 B 511 ASP GLY VAL LYS ARG SER ASP MET ALA ALA GLN LEU SER SEQRES 27 B 511 PHE THR VAL PRO ILE PRO THR THR GLU LEU GLY GLY ILE SEQRES 28 B 511 ILE VAL THR PHE ALA CYS ILE LYS PRO ASP GLU THR LEU SEQRES 29 B 511 SER SER GLN PRO HIS PRO ILE LEU ALA ASP HIS TRP ARG SEQRES 30 B 511 LEU ASP ASN PHE VAL ALA ASP GLU LEU ALA LEU ASP PRO SEQRES 31 B 511 GLN PRO VAL MET ALA ARG GLU LEU ASP TYR LYS VAL ALA SEQRES 32 B 511 GLN ALA ASN GLU THR THR VAL VAL PHE TYR THR GLY LEU SEQRES 33 B 511 ASN GLU LEU LYS LYS THR TYR VAL SER TYR GLY LEU CYS SEQRES 34 B 511 ARG ALA LEU ASP PRO ASN THR VAL GLU SER LYS ASN ALA SEQRES 35 B 511 VAL TRP GLN LEU GLU VAL PRO LEU SER VAL THR PRO GLU SEQRES 36 B 511 THR VAL LEU TYR PRO ALA ASP LEU PRO GLN TYR PRO PHE SEQRES 37 B 511 ALA ASP GLN GLN ALA GLU VAL CYS THR TYR VAL VAL GLN SEQRES 38 B 511 SER THR ALA VAL MET PRO THR PRO MET ILE PHE GLY PRO SEQRES 39 B 511 SER PRO VAL GLU GLN LEU ALA VAL ILE GLU THR GLU ASP SEQRES 40 B 511 LEU PHE GLU ASP HELIX 1 AA1 VAL B 71 ASN B 79 1 9 HELIX 2 AA2 MET B 87 SER B 97 1 11 HELIX 3 AA3 THR B 108 GLY B 115 1 8 HELIX 4 AA4 GLU B 129 TYR B 147 1 19 HELIX 5 AA5 THR B 168 ASN B 174 1 7 HELIX 6 AA6 LYS B 263 CYS B 275 1 13 HELIX 7 AA7 GLU B 284 GLY B 292 1 9 HELIX 8 AA8 ASP B 320 GLY B 327 1 8 HELIX 9 AA9 ASN B 380 ALA B 387 1 8 HELIX 10 AB1 MET B 394 LEU B 398 5 5 HELIX 11 AB2 GLN B 404 THR B 408 5 5 SHEET 1 AA1 4 ASN B 8 PHE B 20 0 SHEET 2 AA1 4 CYS B 476 THR B 488 -1 O MET B 486 N ARG B 10 SHEET 3 AA1 4 MET B 40 LEU B 49 -1 N SER B 42 O THR B 483 SHEET 4 AA1 4 ALA B 334 PRO B 342 -1 O LEU B 337 N VAL B 45 SHEET 1 AA2 5 THR B 161 PRO B 162 0 SHEET 2 AA2 5 LYS B 24 VAL B 33 -1 N LEU B 25 O THR B 161 SHEET 3 AA2 5 GLY B 350 PRO B 360 -1 O THR B 354 N MET B 29 SHEET 4 AA2 5 ILE B 60 PRO B 70 -1 N VAL B 69 O ILE B 351 SHEET 5 AA2 5 PHE B 302 LYS B 307 -1 O LEU B 304 N ALA B 66 SHEET 1 AA3 3 ILE B 52 ALA B 53 0 SHEET 2 AA3 3 LYS B 329 ASP B 332 -1 O SER B 331 N ILE B 52 SHEET 3 AA3 3 GLN B 314 GLY B 317 -1 N GLN B 314 O ASP B 332 SHEET 1 AA4 3 LEU B 104 GLU B 105 0 SHEET 2 AA4 3 LEU B 124 ASN B 128 -1 O VAL B 127 N GLU B 105 SHEET 3 AA4 3 ARG B 119 ASN B 121 -1 N ASN B 121 O LEU B 124 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000