HEADER DNA BINDING PROTEIN 04-JUN-24 9FKU TITLE CRYSTAL STRUCTURE OF AIMR FROM KATMIRA PHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARBITRIUM RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLY-VAL-VAL-ARG-GLY-ALA; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 9 ORGANISM_TAXID: 1423 KEYWDS ARBITRIUM RECEPTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.GALLEGO DEL SOL,A.MARINA REVDAT 2 27-MAY-26 9FKU 1 JRNL REVDAT 1 18-JUN-25 9FKU 0 JRNL AUTH F.GALLEGO-DEL-SOL,D.SIN,C.CHMIELOWSKA,J.MANCHENO-BONILLO, JRNL AUTH 2 Y.LI,S.ZAMORA-CABALLERO,N.QUILES-PUCHALT,J.R.PENADES, JRNL AUTH 3 A.MARINA JRNL TITL PHAGES COMMUNICATE ACROSS SPECIES TO SHAPE MICROBIAL JRNL TITL 2 ECOSYSTEMS. JRNL REF CELL V. 189 3025 2026 JRNL REFN ISSN 1097-4172 JRNL PMID 41923642 JRNL DOI 10.1016/J.CELL.2026.03.004 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 76351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4067 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8598 43.4859 10.4793 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.051 REMARK 3 T33: 0.0222 T12: 0.0225 REMARK 3 T13: -0.0249 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.0053 L22: 1.3143 REMARK 3 L33: 1.6087 L12: -0.036 REMARK 3 L13: -0.2172 L23: 0.253 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: 0.2249 S13: 0.1123 REMARK 3 S21: 0.2249 S22: 0.0859 S23: -0.0199 REMARK 3 S31: 0.1123 S32: -0.0199 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 386 REMARK 3 ORIGIN FOR THE GROUP (A): -9.23 17.394 2.22 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.0201 REMARK 3 T33: 0.0702 T12: -0.0173 REMARK 3 T13: -0.013 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.9506 L22: 1.029 REMARK 3 L33: 1.6182 L12: 0.0413 REMARK 3 L13: -0.4442 L23: 0.2801 REMARK 3 S TENSOR REMARK 3 S11: -0.049 S12: 0.0794 S13: 0.0872 REMARK 3 S21: 0.0794 S22: 0.0303 S23: -0.0397 REMARK 3 S31: 0.0872 S32: -0.0397 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 6 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5987 41.329 1.4206 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.059 REMARK 3 T33: 0.0769 T12: -0.0137 REMARK 3 T13: 0.0151 T23: -0.029 REMARK 3 L TENSOR REMARK 3 L11: 5.621 L22: 3.5932 REMARK 3 L33: 7.1835 L12: -2.6558 REMARK 3 L13: -6.3037 L23: 2.4849 REMARK 3 S TENSOR REMARK 3 S11: -0.3061 S12: -0.0404 S13: 0.4182 REMARK 3 S21: -0.0404 S22: 0.1127 S23: 0.0843 REMARK 3 S31: 0.4182 S32: 0.0843 S33: 0.1934 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 6 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8409 17.8081 -6.8504 REMARK 3 T TENSOR REMARK 3 T11: 0.0935 T22: 0.0466 REMARK 3 T33: 0.1108 T12: -0.0222 REMARK 3 T13: 0.0118 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.3713 L22: 2.5374 REMARK 3 L33: 6.0599 L12: 0.1965 REMARK 3 L13: -0.1174 L23: -2.3095 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: -0.0426 S13: -0.237 REMARK 3 S21: -0.0426 S22: 0.0547 S23: 0.16 REMARK 3 S31: -0.237 S32: 0.16 S33: -0.1484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80454 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PENTAERITRITOL ETHOXILATE, 3% REMARK 280 JEFFAMINE, 0.2M POTASSIUM ACETATE, 0.1M MES, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.53450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.53450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.88250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 101.79100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.88250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 101.79100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.53450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.88250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 101.79100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.53450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.88250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 101.79100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 620 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 696 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 508 O HOH A 684 2.08 REMARK 500 OE1 GLU B 215 O HOH B 501 2.10 REMARK 500 OE1 GLU B 134 O HOH B 502 2.14 REMARK 500 NH2 ARG C 4 O HOH C 101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 19 CG - SD - CE ANGL. DEV. = -12.4 DEGREES REMARK 500 MET B 1 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 98.53 -170.65 REMARK 500 ASN A 209 73.28 -104.87 REMARK 500 ASN A 209 68.45 -101.65 REMARK 500 GLU A 310 65.24 -100.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 186 0.08 SIDE CHAIN REMARK 500 ARG A 272 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 696 DISTANCE = 6.18 ANGSTROMS DBREF1 9FKU A 1 386 UNP A0A8I3AZZ2_BACIU DBREF2 9FKU A A0A8I3AZZ2 2 387 DBREF1 9FKU B 1 386 UNP A0A8I3AZZ2_BACIU DBREF2 9FKU B A0A8I3AZZ2 2 387 DBREF 9FKU C 1 6 PDB 9FKU 9FKU 1 6 DBREF 9FKU D 1 6 PDB 9FKU 9FKU 1 6 SEQRES 1 A 386 MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU GLU SEQRES 2 A 386 ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL ALA SEQRES 3 A 386 GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU ASN SEQRES 4 A 386 HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE VAL SEQRES 5 A 386 ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR GLU SEQRES 6 A 386 LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS THR SEQRES 7 A 386 LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA ASN SEQRES 8 A 386 MET PHE PHE GLU ILE GLU ASP ALA LEU ILE ASP SER MET SEQRES 9 A 386 ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY LYS SEQRES 10 A 386 VAL TYR LYS ILE HIS ARG GLU LEU SER LYS GLY GLU ILE SEQRES 11 A 386 ASP VAL PHE GLU ALA SER ALA ASN ILE GLY LYS GLN ARG SEQRES 12 A 386 ILE LYS THR ALA GLU MET ASN ILE PHE SER LYS MET LEU SEQRES 13 A 386 LEU MET TYR ASP CYS LEU ASN LYS GLY ASN PHE ALA PRO SEQRES 14 A 386 MET MET LEU LEU PHE GLN GLN ILE ASP LEU SER GLU ILE SEQRES 15 A 386 LYS GLU ASN ARG TYR LEU LYS ASN SER PHE GLU THR ARG SEQRES 16 A 386 ILE ASN VAL LEU LEU SER ASN ILE TYR LEU ASN GLU ASN SEQRES 17 A 386 ASN LEU GLU LEU CYS ARG GLU TYR ALA GLN LYS ALA ILE SEQRES 18 A 386 SER SER THR ASP THR GLN ARG PHE LEU VAL PHE SER TYR SEQRES 19 A 386 LEU THR ILE GLY THR SER TYR ILE PHE SER ASP PHE ASN SEQRES 20 A 386 LEU SER LYS GLN ASN TYR LEU ILE GLY LEU LYS PHE ALA SEQRES 21 A 386 LYS GLY ASN PRO GLY PHE GLU GLU PHE PHE LYS ARG ASN SEQRES 22 A 386 LEU SER PHE LEU ASN ASN PHE TRP ASN LYS GLU ASN GLU SEQRES 23 A 386 TRP ILE ASN TYR ASP SER ASP ALA VAL THR ASP MET GLN SEQRES 24 A 386 GLU VAL ILE PHE GLU LEU ILE ASN HIS LYS GLU LEU SER SEQRES 25 A 386 LYS ALA LEU GLN LEU LEU ASN LYS LEU GLU GLU ARG ASP SEQRES 26 A 386 GLN ASN GLU ASN GLU LEU GLY PHE HIS TYR TYR LEU LYS SEQRES 27 A 386 GLY LEU ILE THR ASN GLU LYS GLU ALA PHE PHE LYS SER SEQRES 28 A 386 VAL GLU TYR PHE LYS ALA SER GLN ASP LYS LEU SER ILE SEQRES 29 A 386 LYS MET PRO LEU ILE GLN LEU GLU LYS MET GLY GLU ASN SEQRES 30 A 386 PRO ARG LEU LEU LYS ILE ILE THR MET SEQRES 1 B 386 MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU GLU SEQRES 2 B 386 ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL ALA SEQRES 3 B 386 GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU ASN SEQRES 4 B 386 HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE VAL SEQRES 5 B 386 ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR GLU SEQRES 6 B 386 LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS THR SEQRES 7 B 386 LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA ASN SEQRES 8 B 386 MET PHE PHE GLU ILE GLU ASP ALA LEU ILE ASP SER MET SEQRES 9 B 386 ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY LYS SEQRES 10 B 386 VAL TYR LYS ILE HIS ARG GLU LEU SER LYS GLY GLU ILE SEQRES 11 B 386 ASP VAL PHE GLU ALA SER ALA ASN ILE GLY LYS GLN ARG SEQRES 12 B 386 ILE LYS THR ALA GLU MET ASN ILE PHE SER LYS MET LEU SEQRES 13 B 386 LEU MET TYR ASP CYS LEU ASN LYS GLY ASN PHE ALA PRO SEQRES 14 B 386 MET MET LEU LEU PHE GLN GLN ILE ASP LEU SER GLU ILE SEQRES 15 B 386 LYS GLU ASN ARG TYR LEU LYS ASN SER PHE GLU THR ARG SEQRES 16 B 386 ILE ASN VAL LEU LEU SER ASN ILE TYR LEU ASN GLU ASN SEQRES 17 B 386 ASN LEU GLU LEU CYS ARG GLU TYR ALA GLN LYS ALA ILE SEQRES 18 B 386 SER SER THR ASP THR GLN ARG PHE LEU VAL PHE SER TYR SEQRES 19 B 386 LEU THR ILE GLY THR SER TYR ILE PHE SER ASP PHE ASN SEQRES 20 B 386 LEU SER LYS GLN ASN TYR LEU ILE GLY LEU LYS PHE ALA SEQRES 21 B 386 LYS GLY ASN PRO GLY PHE GLU GLU PHE PHE LYS ARG ASN SEQRES 22 B 386 LEU SER PHE LEU ASN ASN PHE TRP ASN LYS GLU ASN GLU SEQRES 23 B 386 TRP ILE ASN TYR ASP SER ASP ALA VAL THR ASP MET GLN SEQRES 24 B 386 GLU VAL ILE PHE GLU LEU ILE ASN HIS LYS GLU LEU SER SEQRES 25 B 386 LYS ALA LEU GLN LEU LEU ASN LYS LEU GLU GLU ARG ASP SEQRES 26 B 386 GLN ASN GLU ASN GLU LEU GLY PHE HIS TYR TYR LEU LYS SEQRES 27 B 386 GLY LEU ILE THR ASN GLU LYS GLU ALA PHE PHE LYS SER SEQRES 28 B 386 VAL GLU TYR PHE LYS ALA SER GLN ASP LYS LEU SER ILE SEQRES 29 B 386 LYS MET PRO LEU ILE GLN LEU GLU LYS MET GLY GLU ASN SEQRES 30 B 386 PRO ARG LEU LEU LYS ILE ILE THR MET SEQRES 1 C 6 GLY VAL VAL ARG GLY ALA SEQRES 1 D 6 GLY VAL VAL ARG GLY ALA HET MPD A 401 8 HET ACT A 402 4 HET ACT A 403 4 HET MPD B 401 8 HET MPD B 402 8 HET ACT B 403 4 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACT ACETATE ION FORMUL 5 MPD 3(C6 H14 O2) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 11 HOH *396(H2 O) HELIX 1 AA1 GLU A 2 ASN A 14 1 13 HELIX 2 AA2 SER A 17 ALA A 26 1 10 HELIX 3 AA3 PRO A 31 HIS A 40 1 10 HELIX 4 AA4 PHE A 48 TYR A 59 1 12 HELIX 5 AA5 ARG A 62 ASN A 73 1 12 HELIX 6 AA6 THR A 78 MET A 92 1 15 HELIX 7 AA7 PHE A 93 SER A 106 1 14 HELIX 8 AA8 ASN A 109 LYS A 127 1 19 HELIX 9 AA9 ASP A 131 ARG A 143 1 13 HELIX 10 AB1 THR A 146 LYS A 164 1 19 HELIX 11 AB2 ALA A 168 GLN A 176 1 9 HELIX 12 AB3 ILE A 177 ILE A 182 5 6 HELIX 13 AB4 ASN A 185 GLU A 207 1 23 HELIX 14 AB5 ASN A 209 THR A 224 1 16 HELIX 15 AB6 THR A 226 TYR A 241 1 16 HELIX 16 AB7 ASP A 245 ALA A 260 1 16 HELIX 17 AB8 ASN A 263 TRP A 281 1 19 HELIX 18 AB9 ALA A 294 HIS A 308 1 15 HELIX 19 AC1 GLU A 310 GLU A 322 1 13 HELIX 20 AC2 ASN A 327 ASN A 343 1 17 HELIX 21 AC3 GLU A 344 GLN A 359 1 16 HELIX 22 AC4 ILE A 364 MET A 374 1 11 HELIX 23 AC5 ASN A 377 MET A 386 1 10 HELIX 24 AC6 GLU B 2 ASP B 15 1 14 HELIX 25 AC7 SER B 17 ALA B 26 1 10 HELIX 26 AC8 PRO B 31 HIS B 40 1 10 HELIX 27 AC9 PHE B 48 TYR B 59 1 12 HELIX 28 AD1 ARG B 62 ASN B 73 1 12 HELIX 29 AD2 THR B 78 MET B 92 1 15 HELIX 30 AD3 PHE B 93 SER B 106 1 14 HELIX 31 AD4 ASN B 109 LYS B 127 1 19 HELIX 32 AD5 ASP B 131 ARG B 143 1 13 HELIX 33 AD6 THR B 146 LYS B 164 1 19 HELIX 34 AD7 ALA B 168 GLN B 176 1 9 HELIX 35 AD8 ILE B 177 ILE B 182 5 6 HELIX 36 AD9 ASN B 185 GLU B 207 1 23 HELIX 37 AE1 ASN B 209 SER B 223 1 15 HELIX 38 AE2 THR B 226 TYR B 241 1 16 HELIX 39 AE3 ASP B 245 LYS B 261 1 17 HELIX 40 AE4 ASN B 263 TRP B 281 1 19 HELIX 41 AE5 ALA B 294 HIS B 308 1 15 HELIX 42 AE6 GLU B 310 GLU B 323 1 14 HELIX 43 AE7 ASN B 327 ASN B 343 1 17 HELIX 44 AE8 GLU B 344 GLN B 359 1 16 HELIX 45 AE9 ILE B 364 MET B 374 1 11 HELIX 46 AF1 ASN B 377 THR B 385 1 9 CRYST1 69.765 203.582 143.069 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006990 0.00000 CONECT 6448 6449 CONECT 6449 6448 6450 6451 6452 CONECT 6450 6449 CONECT 6451 6449 CONECT 6452 6449 6453 CONECT 6453 6452 6454 6455 CONECT 6454 6453 CONECT 6455 6453 CONECT 6456 6457 6458 6459 CONECT 6457 6456 CONECT 6458 6456 CONECT 6459 6456 CONECT 6460 6461 6462 6463 CONECT 6461 6460 CONECT 6462 6460 CONECT 6463 6460 CONECT 6464 6465 CONECT 6465 6464 6466 6467 6468 CONECT 6466 6465 CONECT 6467 6465 CONECT 6468 6465 6469 CONECT 6469 6468 6470 6471 CONECT 6470 6469 CONECT 6471 6469 CONECT 6472 6473 CONECT 6473 6472 6474 6475 6476 CONECT 6474 6473 CONECT 6475 6473 CONECT 6476 6473 6477 CONECT 6477 6476 6478 6479 CONECT 6478 6477 CONECT 6479 6477 CONECT 6480 6481 6482 6483 CONECT 6481 6480 CONECT 6482 6480 CONECT 6483 6480 MASTER 415 0 6 46 0 0 0 6 6864 4 36 62 END