HEADER RNA BINDING PROTEIN 07-JUN-24 9FMS TITLE CRYO-EM STRUCTURE OF S. CEREVISIAE RAI1-RAT1-RTT103(252-273) COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-3' EXORIBONUCLEASE 2; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: REGULATOR OF TY1 TRANSPOSITION PROTEIN 103; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DECAPPING NUCLEASE RAI1; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: SCRAI1,NAD-CAPPED RNA HYDROLASE RAI1,DENADDING ENZYME RAI1, COMPND 13 RAT1-INTERACTING PROTEIN; COMPND 14 EC: 3.6.1.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RAT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 16 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 17 ORGANISM_TAXID: 4932; SOURCE 18 GENE: RAI1, YGL246C, NRE387; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL KEYWDS RAI1 NUCLEASE, RTT103 BINDING, STRUCTURED, RNA BINDING, RNA BINDING KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR N.NOSKOVA,A.DIKUNOVA,R.STEFL REVDAT 1 18-DEC-24 9FMS 0 JRNL AUTH A.DIKUNOVA,N.NOSKOVA,J.H.OVERBECK,M.POLAK,D.STELZIG, JRNL AUTH 2 D.ZAPLETAL,K.KUBICEK,J.NOVACEK,R.SPRANGERS,R.STEFL JRNL TITL ASSEMBLY OF THE XRN2/RAT1-RAI1-RTT103 TERMINATION COMPLEXES JRNL TITL 2 IN MESOPHILIC AND THERMOPHILIC ORGANISMS JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL DOI 10.1016/J.STR.2024.11.010 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, COOT, ISOLDE, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, COOT, REMARK 3 ISOLDE REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : AS INITIAL MODEL WAS USED PREVIOUSLY ESTIMATED REMARK 3 SCRAI1-RAT1 DIMER. THE POSITION OF INVESTIGATED PEPTIDE WAS REMARK 3 PREDICTED BY ALPHAFOLD AND MANUALLY BUILT INTO THE CORRESPONDING REMARK 3 CRYO-EM USING COOT. FOR FINAL GEOMETRY ESTIMATION WAS USED REMARK 3 ISOLDE. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.650 REMARK 3 NUMBER OF PARTICLES : 284130 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9FMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292138795. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF S. REMARK 245 CEREVISIAE RAI1-RAT1-RTT103(252- REMARK 245 273) COMPLEX. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.30 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE B 28 REMARK 465 VAL B 29 REMARK 465 ASP B 30 REMARK 465 GLY B 31 REMARK 465 ARG B 136 REMARK 465 GLN B 137 REMARK 465 ARG B 138 REMARK 465 GLU B 139 REMARK 465 GLU B 140 REMARK 465 VAL B 141 REMARK 465 GLY B 142 REMARK 465 GLU B 143 REMARK 465 ILE B 144 REMARK 465 ILE B 145 REMARK 465 ASP B 146 REMARK 465 ASP B 147 REMARK 465 ALA B 148 REMARK 465 ARG B 263 REMARK 465 ASN B 264 REMARK 465 ASN B 265 REMARK 465 LEU B 266 REMARK 465 LYS B 267 REMARK 465 ASP B 268 REMARK 465 THR B 269 REMARK 465 ILE B 270 REMARK 465 ASN B 271 REMARK 465 MET B 272 REMARK 465 THR B 273 REMARK 465 GLU B 274 REMARK 465 GLU B 275 REMARK 465 GLU B 276 REMARK 465 LYS B 277 REMARK 465 GLN B 278 REMARK 465 PHE B 279 REMARK 465 LEU B 280 REMARK 465 GLN B 281 REMARK 465 ARG B 408 REMARK 465 ARG B 409 REMARK 465 LYS B 410 REMARK 465 ALA B 411 REMARK 465 GLN B 412 REMARK 465 LYS B 413 REMARK 465 ASN B 414 REMARK 465 MET B 415 REMARK 465 SER B 416 REMARK 465 LYS B 417 REMARK 465 GLY B 418 REMARK 465 GLN B 419 REMARK 465 ASP B 420 REMARK 465 ARG B 421 REMARK 465 HIS B 422 REMARK 465 PRO B 423 REMARK 465 THR B 424 REMARK 465 VAL B 425 REMARK 465 ALA B 426 REMARK 465 THR B 427 REMARK 465 GLU B 428 REMARK 465 GLN B 429 REMARK 465 LEU B 430 REMARK 465 GLN B 431 REMARK 465 MET B 432 REMARK 465 TYR B 433 REMARK 465 ASP B 434 REMARK 465 THR B 435 REMARK 465 GLN B 436 REMARK 465 GLY B 437 REMARK 465 ASN B 438 REMARK 465 LEU B 439 REMARK 465 ALA B 440 REMARK 465 LYS B 441 REMARK 465 GLY B 442 REMARK 465 SER B 443 REMARK 465 TRP B 444 REMARK 465 ASN B 445 REMARK 465 LEU B 446 REMARK 465 THR B 447 REMARK 465 THR B 448 REMARK 465 SER B 449 REMARK 465 ASP B 450 REMARK 465 MET B 451 REMARK 465 VAL B 452 REMARK 465 ARG B 453 REMARK 465 LEU B 454 REMARK 465 LYS B 455 REMARK 465 LYS B 456 REMARK 465 GLU B 457 REMARK 465 LEU B 458 REMARK 465 MET B 459 REMARK 465 LEU B 460 REMARK 465 ALA B 461 REMARK 465 ASN B 462 REMARK 465 GLU B 463 REMARK 465 GLY B 464 REMARK 465 ASN B 465 REMARK 465 GLU B 466 REMARK 465 GLU B 467 REMARK 465 ALA B 468 REMARK 465 ILE B 469 REMARK 465 ALA B 470 REMARK 465 LYS B 471 REMARK 465 VAL B 472 REMARK 465 LYS B 473 REMARK 465 GLN B 474 REMARK 465 GLN B 475 REMARK 465 SER B 476 REMARK 465 ASP B 477 REMARK 465 LYS B 478 REMARK 465 ASN B 479 REMARK 465 ASN B 480 REMARK 465 GLU B 481 REMARK 465 LEU B 482 REMARK 465 MET B 483 REMARK 465 LYS B 484 REMARK 465 ASP B 485 REMARK 465 ILE B 486 REMARK 465 SER B 487 REMARK 465 LYS B 488 REMARK 465 GLU B 489 REMARK 465 GLU B 490 REMARK 465 ILE B 491 REMARK 465 ASP B 492 REMARK 465 ASP B 493 REMARK 465 ALA B 494 REMARK 465 VAL B 495 REMARK 465 SER B 496 REMARK 465 LYS B 497 REMARK 465 ALA B 498 REMARK 465 ASN B 499 REMARK 465 LYS B 500 REMARK 465 THR B 501 REMARK 465 ASN B 502 REMARK 465 PHE B 503 REMARK 465 ASN B 504 REMARK 465 LEU B 505 REMARK 465 ALA B 506 REMARK 465 GLU B 507 REMARK 465 VAL B 508 REMARK 465 MET B 509 REMARK 465 LYS B 510 REMARK 465 GLN B 511 REMARK 465 LYS B 512 REMARK 465 ILE B 513 REMARK 465 ILE B 514 REMARK 465 ASN B 515 REMARK 465 LYS B 516 REMARK 465 LYS B 517 REMARK 465 HIS B 518 REMARK 465 ARG B 519 REMARK 465 LEU B 520 REMARK 465 GLU B 521 REMARK 465 LYS B 522 REMARK 465 ASP B 523 REMARK 465 ASN B 524 REMARK 465 GLU B 525 REMARK 465 GLU B 526 REMARK 465 GLU B 527 REMARK 465 GLU B 528 REMARK 465 ILE B 529 REMARK 465 ALA B 530 REMARK 465 LYS B 531 REMARK 465 ASP B 532 REMARK 465 SER B 533 REMARK 465 LYS B 534 REMARK 465 LYS B 535 REMARK 465 VAL B 536 REMARK 465 LYS B 537 REMARK 465 THR B 538 REMARK 465 GLU B 539 REMARK 465 LYS B 540 REMARK 465 ALA B 541 REMARK 465 GLU B 542 REMARK 465 SER B 543 REMARK 465 GLU B 544 REMARK 465 CYS B 545 REMARK 465 ASP B 546 REMARK 465 LEU B 547 REMARK 465 ASP B 548 REMARK 465 ALA B 549 REMARK 465 GLU B 550 REMARK 465 ILE B 551 REMARK 465 LYS B 552 REMARK 465 ASP B 553 REMARK 465 GLU B 554 REMARK 465 ILE B 555 REMARK 465 VAL B 556 REMARK 465 ALA B 557 REMARK 465 ASP B 558 REMARK 465 VAL B 559 REMARK 465 ASN B 560 REMARK 465 ASP B 561 REMARK 465 ARG B 562 REMARK 465 GLU B 563 REMARK 465 ASN B 564 REMARK 465 SER B 565 REMARK 465 GLU B 566 REMARK 465 THR B 567 REMARK 465 THR B 568 REMARK 465 GLU B 569 REMARK 465 VAL B 570 REMARK 465 SER B 571 REMARK 465 ARG B 572 REMARK 465 ASP B 573 REMARK 465 SER B 574 REMARK 465 PRO B 575 REMARK 465 VAL B 576 REMARK 465 HIS B 577 REMARK 465 SER B 578 REMARK 465 THR B 579 REMARK 465 VAL B 580 REMARK 465 ASN B 581 REMARK 465 VAL B 582 REMARK 465 SER B 583 REMARK 465 GLU B 584 REMARK 465 ASN B 886 REMARK 465 GLN B 887 REMARK 465 ASN B 888 REMARK 465 TYR B 889 REMARK 465 SER B 890 REMARK 465 ARG B 891 REMARK 465 ARG B 932 REMARK 465 ASN B 933 REMARK 465 ASN B 934 REMARK 465 VAL B 935 REMARK 465 GLN B 936 REMARK 465 PRO B 937 REMARK 465 ALA B 938 REMARK 465 HIS B 939 REMARK 465 ASN B 940 REMARK 465 TYR B 941 REMARK 465 GLY B 942 REMARK 465 ARG B 943 REMARK 465 ASN B 944 REMARK 465 SER B 945 REMARK 465 TYR B 946 REMARK 465 ASN B 947 REMARK 465 SER B 948 REMARK 465 GLN B 949 REMARK 465 PRO B 950 REMARK 465 GLY B 951 REMARK 465 PHE B 952 REMARK 465 ASN B 953 REMARK 465 ASN B 954 REMARK 465 SER B 955 REMARK 465 ARG B 956 REMARK 465 TYR B 957 REMARK 465 ASP B 958 REMARK 465 GLY B 959 REMARK 465 GLY B 960 REMARK 465 ASN B 961 REMARK 465 ASN B 962 REMARK 465 ASN B 963 REMARK 465 TYR B 964 REMARK 465 ARG B 965 REMARK 465 GLN B 966 REMARK 465 ASN B 967 REMARK 465 SER B 968 REMARK 465 ASN B 969 REMARK 465 TYR B 970 REMARK 465 ARG B 971 REMARK 465 ASN B 972 REMARK 465 ASN B 973 REMARK 465 ASN B 974 REMARK 465 TYR B 975 REMARK 465 SER B 976 REMARK 465 GLY B 977 REMARK 465 ASN B 978 REMARK 465 ARG B 979 REMARK 465 ASN B 980 REMARK 465 SER B 981 REMARK 465 GLY B 982 REMARK 465 GLN B 983 REMARK 465 TYR B 984 REMARK 465 SER B 985 REMARK 465 GLY B 986 REMARK 465 ASN B 987 REMARK 465 SER B 988 REMARK 465 TYR B 989 REMARK 465 SER B 990 REMARK 465 ARG B 991 REMARK 465 ASN B 992 REMARK 465 ASN B 993 REMARK 465 LYS B 994 REMARK 465 GLN B 995 REMARK 465 SER B 996 REMARK 465 ARG B 997 REMARK 465 TYR B 998 REMARK 465 ASP B 999 REMARK 465 ASN B 1000 REMARK 465 SER B 1001 REMARK 465 ARG B 1002 REMARK 465 ALA B 1003 REMARK 465 ASN B 1004 REMARK 465 ARG B 1005 REMARK 465 ARG B 1006 REMARK 465 LYS D 1 REMARK 465 ASN D 2 REMARK 465 VAL D 3 REMARK 465 ASP D 4 REMARK 465 GLU D 5 REMARK 465 ASP D 19 REMARK 465 ASP D 20 REMARK 465 ASP D 21 REMARK 465 ASP D 22 REMARK 465 ALA A 146 REMARK 465 ALA A 147 REMARK 465 LYS A 148 REMARK 465 ALA A 149 REMARK 465 SER A 150 REMARK 465 SER A 151 REMARK 465 ALA A 152 REMARK 465 THR A 153 REMARK 465 GLU A 154 REMARK 465 ALA A 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 671 CG CD OE1 OE2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 657 OD2 ASP B 724 1.57 REMARK 500 HH TYR B 221 OE1 GLU B 245 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 94 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 107 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 117 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 122 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 213 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 261 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 298 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 318 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 607 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 624 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 745 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 922 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 34 107.20 -55.00 REMARK 500 ARG B 92 67.14 36.83 REMARK 500 ASN B 190 23.75 -144.59 REMARK 500 SER B 196 70.39 -112.50 REMARK 500 LEU B 341 51.65 -104.03 REMARK 500 GLN B 644 -2.66 -143.27 REMARK 500 PRO B 699 151.64 -47.70 REMARK 500 SER B 731 -158.75 -160.59 REMARK 500 ARG B 764 -14.81 71.16 REMARK 500 SER B 807 -8.01 -141.20 REMARK 500 GLN B 831 34.06 -93.51 REMARK 500 LEU B 838 19.38 53.80 REMARK 500 GLU A 33 11.76 59.37 REMARK 500 TYR A 47 112.09 -161.78 REMARK 500 PHE A 116 -42.62 -131.67 REMARK 500 ASN A 132 -48.46 -130.89 REMARK 500 ASN A 158 -122.11 47.69 REMARK 500 ASP A 201 56.51 -144.80 REMARK 500 ASP A 227 -67.77 -102.12 REMARK 500 HIS A 284 -141.20 59.60 REMARK 500 TYR A 285 23.61 -140.77 REMARK 500 ASN A 306 79.64 -151.08 REMARK 500 ASP A 334 47.17 -107.83 REMARK 500 HIS A 352 7.48 59.54 REMARK 500 LEU A 375 -44.10 -130.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 94 0.10 SIDE CHAIN REMARK 500 ARG B 175 0.09 SIDE CHAIN REMARK 500 TYR B 230 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 172 OE2 REMARK 620 2 ASP A 223 OD1 86.2 REMARK 620 3 ASP A 223 OD2 103.6 51.1 REMARK 620 4 GLU A 241 OE2 156.5 96.8 96.2 REMARK 620 5 LEU A 242 O 94.2 148.6 98.8 95.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8Q6V RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF S. CEREVISIAE RAI1-RAT1 DIMER. REMARK 900 RELATED ID: EMD-18199 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF S. CEREVISIAE RAI1-RAT1 DIMER. REMARK 900 RELATED ID: 9EXS RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF CH. THERMOPHILUM RAI1-RAT1 DIMER. REMARK 900 RELATED ID: EMD-50048 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF CH. THERMOPHILUM RAI1-RAT1 DIMER. REMARK 900 RELATED ID: EMD-50566 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF S. CEREVISIAE RAI1-RAT1-RTT103(252-273) REMARK 900 COMPLEX. DBREF 9FMS B 1 1006 UNP Q02792 XRN2_YEAST 1 1006 DBREF 9FMS D 1 22 UNP Q05543 RT103_YEAST 252 273 DBREF 9FMS A 1 387 UNP P53063 DXO_YEAST 1 387 SEQRES 1 B 1006 MET GLY VAL PRO SER PHE PHE ARG TRP LEU SER ARG LYS SEQRES 2 B 1006 TYR PRO LYS ILE ILE SER PRO VAL LEU GLU GLU GLN PRO SEQRES 3 B 1006 GLN ILE VAL ASP GLY VAL ILE LEU PRO LEU ASP TYR SER SEQRES 4 B 1006 ALA SER ASN PRO ASN GLY GLU LEU ASP ASN LEU TYR LEU SEQRES 5 B 1006 ASP MET ASN GLY ILE VAL HIS PRO CYS SER HIS PRO GLU SEQRES 6 B 1006 ASN LYS PRO PRO PRO GLU THR GLU ASP GLU MET LEU LEU SEQRES 7 B 1006 ALA VAL PHE GLU TYR THR ASN ARG VAL LEU ASN MET ALA SEQRES 8 B 1006 ARG PRO ARG LYS VAL LEU VAL MET ALA VAL ASP GLY VAL SEQRES 9 B 1006 ALA PRO ARG ALA LYS MET ASN GLN GLN ARG ALA ARG ARG SEQRES 10 B 1006 PHE ARG SER ALA ARG ASP ALA GLN ILE GLU ASN GLU ALA SEQRES 11 B 1006 ARG GLU GLU ILE MET ARG GLN ARG GLU GLU VAL GLY GLU SEQRES 12 B 1006 ILE ILE ASP ASP ALA VAL ARG ASN LYS LYS THR TRP ASP SEQRES 13 B 1006 SER ASN ALA ILE THR PRO GLY THR PRO PHE MET ASP LYS SEQRES 14 B 1006 LEU ALA ALA ALA LEU ARG TYR TRP THR ALA PHE LYS LEU SEQRES 15 B 1006 ALA THR ASP PRO GLY TRP LYS ASN LEU GLN VAL ILE ILE SEQRES 16 B 1006 SER ASP ALA THR VAL PRO GLY GLU GLY GLU HIS LYS ILE SEQRES 17 B 1006 MET ASN PHE ILE ARG SER GLN ARG ALA ASP PRO GLU TYR SEQRES 18 B 1006 ASN PRO ASN THR THR HIS CYS ILE TYR GLY LEU ASP ALA SEQRES 19 B 1006 ASP LEU ILE PHE LEU GLY LEU ALA THR HIS GLU PRO HIS SEQRES 20 B 1006 PHE LYS ILE LEU ARG GLU ASP VAL PHE ALA GLN ASP ASN SEQRES 21 B 1006 ARG LYS ARG ASN ASN LEU LYS ASP THR ILE ASN MET THR SEQRES 22 B 1006 GLU GLU GLU LYS GLN PHE LEU GLN LYS GLN ASN SER GLU SEQRES 23 B 1006 GLN PRO PHE LEU TRP LEU HIS ILE ASN VAL LEU ARG GLU SEQRES 24 B 1006 TYR LEU SER ALA GLU LEU TRP VAL PRO GLY LEU PRO PHE SEQRES 25 B 1006 THR PHE ASP LEU GLU ARG ALA ILE ASP ASP TRP VAL PHE SEQRES 26 B 1006 MET CYS PHE PHE CYS GLY ASN ASP PHE LEU PRO HIS LEU SEQRES 27 B 1006 PRO CYS LEU ASP VAL ARG GLU ASN SER ILE ASP ILE LEU SEQRES 28 B 1006 LEU ASP ILE TRP LYS VAL VAL LEU PRO LYS LEU LYS THR SEQRES 29 B 1006 TYR MET THR CYS ASP GLY VAL LEU ASN LEU PRO SER VAL SEQRES 30 B 1006 GLU THR LEU LEU GLN HIS LEU GLY SER ARG GLU GLY ASP SEQRES 31 B 1006 ILE PHE LYS THR ARG HIS ILE GLN GLU ALA ARG LYS LYS SEQRES 32 B 1006 GLU ALA PHE GLU ARG ARG LYS ALA GLN LYS ASN MET SER SEQRES 33 B 1006 LYS GLY GLN ASP ARG HIS PRO THR VAL ALA THR GLU GLN SEQRES 34 B 1006 LEU GLN MET TYR ASP THR GLN GLY ASN LEU ALA LYS GLY SEQRES 35 B 1006 SER TRP ASN LEU THR THR SER ASP MET VAL ARG LEU LYS SEQRES 36 B 1006 LYS GLU LEU MET LEU ALA ASN GLU GLY ASN GLU GLU ALA SEQRES 37 B 1006 ILE ALA LYS VAL LYS GLN GLN SER ASP LYS ASN ASN GLU SEQRES 38 B 1006 LEU MET LYS ASP ILE SER LYS GLU GLU ILE ASP ASP ALA SEQRES 39 B 1006 VAL SER LYS ALA ASN LYS THR ASN PHE ASN LEU ALA GLU SEQRES 40 B 1006 VAL MET LYS GLN LYS ILE ILE ASN LYS LYS HIS ARG LEU SEQRES 41 B 1006 GLU LYS ASP ASN GLU GLU GLU GLU ILE ALA LYS ASP SER SEQRES 42 B 1006 LYS LYS VAL LYS THR GLU LYS ALA GLU SER GLU CYS ASP SEQRES 43 B 1006 LEU ASP ALA GLU ILE LYS ASP GLU ILE VAL ALA ASP VAL SEQRES 44 B 1006 ASN ASP ARG GLU ASN SER GLU THR THR GLU VAL SER ARG SEQRES 45 B 1006 ASP SER PRO VAL HIS SER THR VAL ASN VAL SER GLU GLY SEQRES 46 B 1006 PRO LYS ASN GLY VAL PHE ASP THR ASP GLU PHE VAL LYS SEQRES 47 B 1006 LEU PHE GLU PRO GLY TYR HIS GLU ARG TYR TYR THR ALA SEQRES 48 B 1006 LYS PHE HIS VAL THR PRO GLN ASP ILE GLU GLN LEU ARG SEQRES 49 B 1006 LYS ASP MET VAL LYS CYS TYR ILE GLU GLY VAL ALA TRP SEQRES 50 B 1006 VAL LEU MET TYR TYR TYR GLN GLY CYS ALA SER TRP ASN SEQRES 51 B 1006 TRP PHE TYR PRO TYR HIS TYR ALA PRO LEU ALA THR ASP SEQRES 52 B 1006 PHE HIS GLY PHE SER HIS LEU GLU ILE LYS PHE GLU GLU SEQRES 53 B 1006 GLY THR PRO PHE LEU PRO TYR GLU GLN LEU MET SER VAL SEQRES 54 B 1006 LEU PRO ALA ALA SER GLY HIS ALA LEU PRO LYS ILE PHE SEQRES 55 B 1006 ARG SER LEU MET SER GLU PRO ASP SER GLU ILE ILE ASP SEQRES 56 B 1006 PHE TYR PRO GLU GLU PHE PRO ILE ASP MET ASN GLY LYS SEQRES 57 B 1006 LYS MET SER TRP GLN GLY ILE ALA LEU LEU PRO PHE ILE SEQRES 58 B 1006 ASP GLN ASP ARG LEU LEU THR ALA VAL ARG ALA GLN TYR SEQRES 59 B 1006 PRO LEU LEU SER ASP ALA GLU ARG ALA ARG ASN ILE ARG SEQRES 60 B 1006 GLY GLU PRO VAL LEU LEU ILE SER ASN LYS ASN ALA ASN SEQRES 61 B 1006 TYR GLU ARG PHE SER LYS LYS LEU TYR SER LYS GLU ASN SEQRES 62 B 1006 ASN ASN ASN ASN VAL VAL VAL LYS PHE GLN HIS PHE LYS SEQRES 63 B 1006 SER GLY LEU SER GLY ILE VAL SER LYS ASP VAL GLU GLY SEQRES 64 B 1006 PHE GLU LEU ASN GLY LYS ILE VAL CYS PRO ILE GLN GLY SEQRES 65 B 1006 GLY SER LEU PRO ASN LEU SER THR THR LEU ILE LEU LYS SEQRES 66 B 1006 MET SER TYR ARG LEU ILE PRO LEU PRO SER ARG ASN LYS SEQRES 67 B 1006 SER ILE ILE LEU ASN GLY PHE ILE PRO SER GLU PRO VAL SEQRES 68 B 1006 LEU THR ALA TYR ASP LEU ASP SER ILE MET TYR LYS TYR SEQRES 69 B 1006 ASN ASN GLN ASN TYR SER ARG ARG TRP ASN PHE GLY ASN SEQRES 70 B 1006 ASP LEU LYS GLN ASN ILE VAL PRO VAL GLY PRO LYS GLY SEQRES 71 B 1006 ILE THR GLN TYR LYS PRO ARG THR GLY GLY TYR ARG ALA SEQRES 72 B 1006 PHE PHE TYR PHE ALA GLU LEU SER ARG ASN ASN VAL GLN SEQRES 73 B 1006 PRO ALA HIS ASN TYR GLY ARG ASN SER TYR ASN SER GLN SEQRES 74 B 1006 PRO GLY PHE ASN ASN SER ARG TYR ASP GLY GLY ASN ASN SEQRES 75 B 1006 ASN TYR ARG GLN ASN SER ASN TYR ARG ASN ASN ASN TYR SEQRES 76 B 1006 SER GLY ASN ARG ASN SER GLY GLN TYR SER GLY ASN SER SEQRES 77 B 1006 TYR SER ARG ASN ASN LYS GLN SER ARG TYR ASP ASN SER SEQRES 78 B 1006 ARG ALA ASN ARG ARG SEQRES 1 D 22 LYS ASN VAL ASP GLU ASP ASN ILE ILE PRO THR TYR GLU SEQRES 2 D 22 VAL GLY ASP GLY ASP ASP ASP ASP ASP SEQRES 1 A 387 MET GLY VAL SER ALA ASN LEU PHE VAL LYS GLN ARG GLY SEQRES 2 A 387 SER THR THR ALA LEU LYS GLN PRO LYS GLU ILE GLY PHE SEQRES 3 A 387 TYR SER ARG THR LYS ASP GLU GLU TYR LEU ILE SER ASP SEQRES 4 A 387 ASP THR ASN LEU ASN TYR TYR TYR LEU PRO ASP ALA GLU SEQRES 5 A 387 LEU ASP ARG LYS LEU ASP LEU SER SER GLY PHE GLN LYS SEQRES 6 A 387 PHE LYS ASP TYR TYR LYS ASP PHE GLU ASP ARG CYS SER SEQRES 7 A 387 LEU ARG GLY LEU LEU GLU THR ILE GLU SER SER GLU ARG SEQRES 8 A 387 HIS LYS GLY LYS LYS ILE ASN ALA ASP ILE ILE THR PHE SEQRES 9 A 387 ARG GLY ILE ALA ARG LYS LEU ILE SER CYS ALA PHE ASP SEQRES 10 A 387 SER PRO SER PHE ASN THR VAL ASP LEU ARG ILE VAL SER SEQRES 11 A 387 PHE ASN GLY GLN LEU PHE ILE LYS GLU VAL PRO GLU ALA SEQRES 12 A 387 VAL ASN ALA ALA LYS ALA SER SER ALA THR GLU ALA GLY SEQRES 13 A 387 ARG ASN ILE ASN GLN ASP LEU ASN VAL PHE THR GLY TYR SEQRES 14 A 387 LYS PHE GLU THR LEU ALA THR LEU SER ASN PRO LEU GLN SEQRES 15 A 387 TYR THR PRO ARG GLU VAL ILE GLU LYS ARG THR LYS ARG SEQRES 16 A 387 ILE VAL SER HIS GLY ASP GLU TYR ILE SER VAL VAL ARG SEQRES 17 A 387 THR GLY VAL GLY ASN CYS LYS LEU ILE LEU GLY ALA GLU SEQRES 18 A 387 VAL ASP CYS ILE PHE ASP PHE LYS GLU ASN GLY ARG ASP SEQRES 19 A 387 ASN LEU LYS HIS TYR ALA GLU LEU LYS CYS THR GLN GLN SEQRES 20 A 387 VAL ALA ASN ILE SER ASP THR HIS LYS PHE GLU ARG LYS SEQRES 21 A 387 LEU PHE ARG THR TRP LEU GLN CYS PHE LEU VAL GLY ILE SEQRES 22 A 387 PRO ARG ILE ILE TYR GLY PHE LYS ASP ASP HIS TYR VAL SEQRES 23 A 387 LEU LYS THR VAL GLU GLU PHE SER THR GLU GLU VAL PRO SEQRES 24 A 387 VAL LEU LEU LYS ASN ASN ASN PRO GLN VAL GLY SER ALA SEQRES 25 A 387 CYS LEU GLU ALA ILE LYS TRP TYR GLY LEU LEU THR GLU SEQRES 26 A 387 TRP LEU LEU LYS MET ILE PRO ARG ASP GLU ASP PRO HIS SEQRES 27 A 387 SER GLN ILE ARG ALA PHE LYS LEU VAL PHE GLU ASN ASN SEQRES 28 A 387 HIS LEU ARG LEU SER GLU ILE GLU GLU SER ASP GLU GLU SEQRES 29 A 387 TYR SER GLY LEU ILE ASP GLY GLU HIS ILE LEU SER ASN SEQRES 30 A 387 GLY PHE LYS GLU TRP ARG LYS SER LEU LYS HET MG A 401 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ HELIX 1 AA1 PRO B 4 TYR B 14 1 11 HELIX 2 AA2 PRO B 35 SER B 39 5 5 HELIX 3 AA3 MET B 54 HIS B 63 1 10 HELIX 4 AA4 THR B 72 ARG B 92 1 21 HELIX 5 AA5 PRO B 106 MET B 135 1 30 HELIX 6 AA6 ASP B 156 ILE B 160 5 5 HELIX 7 AA7 PHE B 166 ASP B 185 1 20 HELIX 8 AA8 PRO B 186 LYS B 189 5 4 HELIX 9 AA9 GLU B 203 ARG B 216 1 14 HELIX 10 AB1 ASP B 235 THR B 243 1 9 HELIX 11 AB2 PHE B 256 ARG B 261 1 6 HELIX 12 AB3 GLN B 283 GLN B 287 5 5 HELIX 13 AB4 ILE B 294 LEU B 305 1 12 HELIX 14 AB5 ASP B 315 CYS B 330 1 16 HELIX 15 AB6 VAL B 343 LEU B 359 1 17 HELIX 16 AB7 PRO B 360 LEU B 362 5 3 HELIX 17 AB8 ASN B 373 GLU B 407 1 35 HELIX 18 AB9 THR B 593 VAL B 597 5 5 HELIX 19 AC1 GLY B 603 HIS B 614 1 12 HELIX 20 AC2 ASP B 619 GLY B 645 1 27 HELIX 21 AC3 LEU B 660 PHE B 664 5 5 HELIX 22 AC4 LEU B 681 SER B 688 1 8 HELIX 23 AC5 PRO B 691 LEU B 698 5 8 HELIX 24 AC6 PRO B 699 GLU B 708 1 10 HELIX 25 AC7 ILE B 713 TYR B 717 5 5 HELIX 26 AC8 ASP B 742 ALA B 752 1 11 HELIX 27 AC9 GLN B 753 LEU B 757 5 5 HELIX 28 AD1 SER B 758 ALA B 763 1 6 HELIX 29 AD2 ASN B 780 TYR B 789 1 10 HELIX 30 AD3 LEU B 838 LEU B 842 5 5 HELIX 31 AD4 THR B 873 TYR B 882 1 10 HELIX 32 AD5 ASN B 894 LEU B 899 1 6 HELIX 33 AD6 LYS B 900 ASN B 902 5 3 HELIX 34 AD7 GLY B 920 SER B 931 1 12 HELIX 35 AD8 PRO A 49 ASP A 54 5 6 HELIX 36 AD9 GLY A 62 PHE A 66 5 5 HELIX 37 AE1 TYR A 70 PHE A 73 5 4 HELIX 38 AE2 LEU A 79 HIS A 92 1 14 HELIX 39 AE3 ARG A 105 SER A 113 1 9 HELIX 40 AE4 CYS A 114 PHE A 116 5 3 HELIX 41 AE5 SER A 118 THR A 123 1 6 HELIX 42 AE6 ASN A 158 ALA A 175 1 18 HELIX 43 AE7 PRO A 180 THR A 184 5 5 HELIX 44 AE8 PRO A 185 LYS A 191 1 7 HELIX 45 AE9 ARG A 192 LYS A 194 5 3 HELIX 46 AF1 ASN A 235 LYS A 237 5 3 HELIX 47 AF2 ASN A 250 LEU A 270 1 21 HELIX 48 AF3 GLU A 296 ASN A 306 1 11 HELIX 49 AF4 ASN A 306 SER A 311 1 6 HELIX 50 AF5 SER A 311 MET A 330 1 20 HELIX 51 AF6 TYR A 365 GLU A 372 1 8 HELIX 52 AF7 ASN A 377 LEU A 386 1 10 SHEET 1 AA111 ILE B 18 PRO B 20 0 SHEET 2 AA111 PHE B 289 HIS B 293 -1 O TRP B 291 N SER B 19 SHEET 3 AA111 PHE B 248 GLU B 253 -1 N ARG B 252 O LEU B 290 SHEET 4 AA111 HIS B 227 TYR B 230 1 N ILE B 229 O LEU B 251 SHEET 5 AA111 LEU B 47 ASP B 53 1 N TYR B 51 O TYR B 230 SHEET 6 AA111 PRO B 93 ALA B 100 1 O ARG B 94 N LEU B 47 SHEET 7 AA111 GLN B 192 SER B 196 1 O ILE B 194 N MET B 99 SHEET 8 AA111 VAL B 771 SER B 775 -1 O LEU B 772 N ILE B 195 SHEET 9 AA111 LEU B 844 ARG B 849 -1 O LEU B 844 N SER B 775 SHEET 10 AA111 GLY B 811 LYS B 815 -1 N ILE B 812 O ARG B 849 SHEET 11 AA111 VAL B 800 PHE B 802 -1 N VAL B 800 O VAL B 813 SHEET 1 AA2 2 THR B 367 CYS B 368 0 SHEET 2 AA2 2 VAL B 371 LEU B 372 -1 O VAL B 371 N CYS B 368 SHEET 1 AA3 3 VAL B 590 PHE B 591 0 SHEET 2 AA3 3 ILE B 723 ASP B 724 1 O ILE B 723 N PHE B 591 SHEET 3 AA3 3 ILE B 735 ALA B 736 -1 O ILE B 735 N ASP B 724 SHEET 1 AA410 THR D 11 GLU D 13 0 SHEET 2 AA410 ALA A 17 ARG A 29 1 O GLN A 20 N GLU D 13 SHEET 3 AA410 TYR A 203 VAL A 211 -1 O ARG A 208 N LYS A 22 SHEET 4 AA410 CYS A 214 GLU A 221 -1 O ALA A 220 N SER A 205 SHEET 5 AA410 ILE A 101 PHE A 104 1 N ILE A 101 O ILE A 217 SHEET 6 AA410 LEU A 135 GLU A 139 1 O LEU A 135 N ILE A 102 SHEET 7 AA410 ARG A 127 PHE A 131 -1 N SER A 130 O PHE A 136 SHEET 8 AA410 PHE A 344 ASN A 350 -1 O LYS A 345 N VAL A 129 SHEET 9 AA410 LEU A 353 ILE A 358 -1 O LEU A 353 N ASN A 350 SHEET 10 AA410 SER A 4 PHE A 8 -1 N LEU A 7 O ARG A 354 SHEET 1 AA5 3 THR D 11 GLU D 13 0 SHEET 2 AA5 3 ALA A 17 ARG A 29 1 O GLN A 20 N GLU D 13 SHEET 3 AA5 3 TYR A 35 ILE A 37 -1 O LEU A 36 N SER A 28 SHEET 1 AA6 6 THR A 176 LEU A 177 0 SHEET 2 AA6 6 ASN A 44 TYR A 46 -1 N TYR A 45 O LEU A 177 SHEET 3 AA6 6 CYS A 224 ILE A 225 1 O ILE A 225 N ASN A 44 SHEET 4 AA6 6 TYR A 239 LYS A 243 -1 O ALA A 240 N CYS A 224 SHEET 5 AA6 6 ARG A 275 LYS A 281 1 O ILE A 277 N GLU A 241 SHEET 6 AA6 6 LEU A 287 SER A 294 -1 O PHE A 293 N ILE A 276 SHEET 1 AA7 2 LYS A 67 ASP A 68 0 SHEET 2 AA7 2 SER A 198 HIS A 199 1 O HIS A 199 N LYS A 67 LINK OE2 GLU A 172 MG MG A 401 1555 1555 1.97 LINK OD1 ASP A 223 MG MG A 401 1555 1555 2.77 LINK OD2 ASP A 223 MG MG A 401 1555 1555 1.88 LINK OE2 GLU A 241 MG MG A 401 1555 1555 1.95 LINK O LEU A 242 MG MG A 401 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000