HEADER OXIDOREDUCTASE 13-JUN-24 9FPO TITLE NI,FE-CODH : EU(II)-REDUCED PH 6.0 + CO COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE 2; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CODH 2; COMPND 5 EC: 1.2.7.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS Z-2901; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901 / DSM 6008; SOURCE 5 GENE: COOS2, COOSII, CHY_0085; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS C-CLUSTER, 4FE-4S, IRON, IRON-SULFUR, METAL-BINDING, NICKEL, NICKEL KEYWDS 2 REDOX, OXIDOREDUCTASE, CARBON DIOXIDE, CARBON MONOXIDE, CODH EXPDTA X-RAY DIFFRACTION AUTHOR Y.BASAK,J.-H.JEOUNG,H.DOBBEK REVDAT 1 30-JUL-25 9FPO 0 JRNL AUTH Y.BASAK,J.-H.JEOUNG,H.DOBBEK JRNL TITL NI,FE-CODH : TI(III)-REDUCED PH 8.0 JRNL REF NATURE CATALYSIS 2025 JRNL DOI 10.1038/S41929-025-01388-5 REMARK 2 REMARK 2 RESOLUTION. 1.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21_5207: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 272869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 13522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1100 - 3.1900 1.00 8835 475 0.1214 0.1408 REMARK 3 2 3.1900 - 2.5300 1.00 8730 456 0.1108 0.1321 REMARK 3 3 2.5300 - 2.2100 1.00 8713 443 0.0989 0.1158 REMARK 3 4 2.2100 - 2.0100 1.00 8765 409 0.1003 0.1157 REMARK 3 5 2.0100 - 1.8700 1.00 8686 427 0.0960 0.1197 REMARK 3 6 1.8700 - 1.7600 1.00 8663 486 0.0944 0.1109 REMARK 3 7 1.7600 - 1.6700 1.00 8688 448 0.0915 0.1050 REMARK 3 8 1.6700 - 1.6000 1.00 8661 476 0.0894 0.1092 REMARK 3 9 1.6000 - 1.5300 1.00 8621 469 0.0932 0.1091 REMARK 3 10 1.5300 - 1.4800 1.00 8617 496 0.0991 0.1221 REMARK 3 11 1.4800 - 1.4300 1.00 8675 421 0.1094 0.1230 REMARK 3 12 1.4300 - 1.3900 1.00 8712 436 0.1186 0.1400 REMARK 3 13 1.3900 - 1.3600 1.00 8655 471 0.1279 0.1591 REMARK 3 14 1.3600 - 1.3200 1.00 8633 426 0.1365 0.1540 REMARK 3 15 1.3200 - 1.2900 1.00 8695 464 0.1413 0.1550 REMARK 3 16 1.2900 - 1.2700 1.00 8676 411 0.1503 0.1824 REMARK 3 17 1.2700 - 1.2400 1.00 8613 488 0.1544 0.1805 REMARK 3 18 1.2400 - 1.2200 1.00 8626 454 0.1567 0.1766 REMARK 3 19 1.2200 - 1.2000 1.00 8662 456 0.1657 0.1983 REMARK 3 20 1.2000 - 1.1800 1.00 8637 475 0.1694 0.1774 REMARK 3 21 1.1800 - 1.1600 1.00 8632 430 0.1785 0.1893 REMARK 3 22 1.1600 - 1.1400 1.00 8640 441 0.1932 0.2154 REMARK 3 23 1.1400 - 1.1200 1.00 8632 431 0.2050 0.2136 REMARK 3 24 1.1200 - 1.1100 1.00 8681 451 0.2233 0.2368 REMARK 3 25 1.1100 - 1.0900 1.00 8583 468 0.2292 0.2432 REMARK 3 26 1.0900 - 1.0800 1.00 8664 423 0.2405 0.2429 REMARK 3 27 1.0800 - 1.0600 1.00 8672 461 0.2564 0.2688 REMARK 3 28 1.0600 - 1.0500 0.99 8526 466 0.2656 0.2797 REMARK 3 29 1.0500 - 1.0400 0.98 8471 446 0.2758 0.2867 REMARK 3 30 1.0400 - 1.0300 0.96 8283 418 0.2911 0.3113 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5256 REMARK 3 ANGLE : 1.453 7221 REMARK 3 CHIRALITY : 1.453 846 REMARK 3 PLANARITY : 0.013 952 REMARK 3 DIHEDRAL : 13.122 1990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 273224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.030 REMARK 200 RESOLUTION RANGE LOW (A) : 66.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, PEG 2000MME 14-18%, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.10400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.68150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.10400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.68150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -218.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.26989 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.22029 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG X 3 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 46 55.50 -91.24 REMARK 500 ASP X 63 -165.04 -108.23 REMARK 500 ALA X 112 78.52 -154.29 REMARK 500 LYS X 157 -168.70 -164.29 REMARK 500 PRO X 160 -175.92 -69.97 REMARK 500 CYS X 201 -124.84 -113.49 REMARK 500 CYS X 201 -119.07 -121.91 REMARK 500 ALA X 203 45.81 -150.16 REMARK 500 THR X 242 -155.71 -152.35 REMARK 500 ASN X 245 172.56 97.75 REMARK 500 HIS X 261 -37.27 -138.24 REMARK 500 CYS X 294 -159.11 59.16 REMARK 500 CYS X 294 -140.80 60.02 REMARK 500 SER X 312 -121.63 46.99 REMARK 500 ASP X 330 -102.69 -99.56 REMARK 500 ASP X 330 -70.80 -119.85 REMARK 500 GLN X 332 129.83 80.84 REMARK 500 ASP X 454 -9.16 82.82 REMARK 500 GLU X 558 40.36 -140.80 REMARK 500 MET X 560 -57.92 -135.89 REMARK 500 SER X 598 -64.13 -142.18 REMARK 500 SER X 598 -62.96 -142.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG X 57 0.09 SIDE CHAIN REMARK 500 ARG X 303 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X1923 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH X1924 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH X1925 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH X1926 DISTANCE = 6.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 39 SG REMARK 620 2 FES X1002 S1 106.7 REMARK 620 3 FES X1002 S2 117.5 105.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 47 SG REMARK 620 2 FES X1002 S1 118.4 REMARK 620 3 FES X1002 S2 113.8 104.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 48 SG REMARK 620 2 SF4 X1001 S1 116.8 REMARK 620 3 SF4 X1001 S2 108.5 105.0 REMARK 620 4 SF4 X1001 S4 112.0 105.5 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 51 SG REMARK 620 2 SF4 X1001 S1 120.8 REMARK 620 3 SF4 X1001 S3 100.8 104.3 REMARK 620 4 SF4 X1001 S4 120.4 103.6 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 56 SG REMARK 620 2 SF4 X1001 S2 107.9 REMARK 620 3 SF4 X1001 S3 118.0 104.0 REMARK 620 4 SF4 X1001 S4 113.7 107.1 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 70 SG REMARK 620 2 SF4 X1001 S1 118.0 REMARK 620 3 SF4 X1001 S2 115.7 103.6 REMARK 620 4 SF4 X1001 S3 110.3 104.3 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 CYS X 295 SG 101.0 REMARK 620 3 F3S X1003 S2 92.8 101.4 REMARK 620 4 CO2 X1006 O1 90.1 113.1 144.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 CYS X 295 SG 97.5 REMARK 620 3 F3S X1003 S2 66.1 98.5 REMARK 620 4 HOH X1104 O 50.1 120.2 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S X1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 333 SG REMARK 620 2 F3S X1003 S2 118.1 REMARK 620 3 F3S X1003 S3 114.5 100.2 REMARK 620 4 F3S X1003 S4 98.5 117.2 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S X1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 446 SG REMARK 620 2 F3S X1003 S1 121.6 REMARK 620 3 F3S X1003 S3 105.1 105.3 REMARK 620 4 F3S X1003 S4 109.3 103.5 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S X1003 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 476 SG REMARK 620 2 F3S X1003 S1 106.4 REMARK 620 3 F3S X1003 S2 112.3 111.4 REMARK 620 4 F3S X1003 S3 119.3 106.3 100.9 REMARK 620 5 CYS X 476 SG 30.4 92.5 142.3 99.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI X1005 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 526 SG REMARK 620 2 F3S X1003 S1 87.2 REMARK 620 3 F3S X1003 S4 165.3 101.9 REMARK 620 4 CO2 X1006 O1 83.2 145.5 82.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI X1005 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 F3S X1003 S1 REMARK 620 2 F3S X1003 S4 99.9 REMARK 620 3 HOH X1666 O 131.1 92.8 REMARK 620 N 1 2 DBREF 9FPO X 1 636 UNP Q9F8A8 COOS2_CARHZ 1 636 SEQADV 9FPO ARG X 3 UNP Q9F8A8 LYS 3 CONFLICT SEQRES 1 X 636 MET ALA ARG GLN ASN LEU LYS SER THR ASP ARG ALA VAL SEQRES 2 X 636 GLN GLN MET LEU ASP LYS ALA LYS ARG GLU GLY ILE GLN SEQRES 3 X 636 THR VAL TRP ASP ARG TYR GLU ALA MET LYS PRO GLN CYS SEQRES 4 X 636 GLY PHE GLY GLU THR GLY LEU CYS CYS ARG HIS CYS LEU SEQRES 5 X 636 GLN GLY PRO CYS ARG ILE ASN PRO PHE GLY ASP GLU PRO SEQRES 6 X 636 LYS VAL GLY ILE CYS GLY ALA THR ALA GLU VAL ILE VAL SEQRES 7 X 636 ALA ARG GLY LEU ASP ARG SER ILE ALA ALA GLY ALA ALA SEQRES 8 X 636 GLY HIS SER GLY HIS ALA LYS HIS LEU ALA HIS THR LEU SEQRES 9 X 636 LYS LYS ALA VAL GLN GLY LYS ALA ALA SER TYR MET ILE SEQRES 10 X 636 LYS ASP ARG THR LYS LEU HIS SER ILE ALA LYS ARG LEU SEQRES 11 X 636 GLY ILE PRO THR GLU GLY GLN LYS ASP GLU ASP ILE ALA SEQRES 12 X 636 LEU GLU VAL ALA LYS ALA ALA LEU ALA ASP PHE HIS GLU SEQRES 13 X 636 LYS ASP THR PRO VAL LEU TRP VAL THR THR VAL LEU PRO SEQRES 14 X 636 PRO SER ARG VAL LYS VAL LEU SER ALA HIS GLY LEU ILE SEQRES 15 X 636 PRO ALA GLY ILE ASP HIS GLU ILE ALA GLU ILE MET HIS SEQRES 16 X 636 ARG THR SER MET GLY CYS ASP ALA ASP ALA GLN ASN LEU SEQRES 17 X 636 LEU LEU GLY GLY LEU ARG CYS SER LEU ALA ASP LEU ALA SEQRES 18 X 636 GLY CYS TYR MET GLY THR ASP LEU ALA ASP ILE LEU PHE SEQRES 19 X 636 GLY THR PRO ALA PRO VAL VAL THR GLU SER ASN LEU GLY SEQRES 20 X 636 VAL LEU LYS ALA ASP ALA VAL ASN VAL ALA VAL HIS GLY SEQRES 21 X 636 HIS ASN PRO VAL LEU SER ASP ILE ILE VAL SER VAL SER SEQRES 22 X 636 LYS GLU MET GLU ASN GLU ALA ARG ALA ALA GLY ALA THR SEQRES 23 X 636 GLY ILE ASN VAL VAL GLY ILE CYS CYS THR GLY ASN GLU SEQRES 24 X 636 VAL LEU MET ARG HIS GLY ILE PRO ALA CYS THR HIS SER SEQRES 25 X 636 VAL SER GLN GLU MET ALA MET ILE THR GLY ALA LEU ASP SEQRES 26 X 636 ALA MET ILE LEU ASP TYR GLN CYS ILE GLN PRO SER VAL SEQRES 27 X 636 ALA THR ILE ALA GLU CYS THR GLY THR THR VAL ILE THR SEQRES 28 X 636 THR MET GLU MET SER LYS ILE THR GLY ALA THR HIS VAL SEQRES 29 X 636 ASN PHE ALA GLU GLU ALA ALA VAL GLU ASN ALA LYS GLN SEQRES 30 X 636 ILE LEU ARG LEU ALA ILE ASP THR PHE LYS ARG ARG LYS SEQRES 31 X 636 GLY LYS PRO VAL GLU ILE PRO ASN ILE LYS THR LYS VAL SEQRES 32 X 636 VAL ALA GLY PHE SER THR GLU ALA ILE ILE ASN ALA LEU SEQRES 33 X 636 SER LYS LEU ASN ALA ASN ASP PRO LEU LYS PRO LEU ILE SEQRES 34 X 636 ASP ASN VAL VAL ASN GLY ASN ILE ARG GLY VAL CYS LEU SEQRES 35 X 636 PHE ALA GLY CYS ASN ASN VAL LYS VAL PRO GLN ASP GLN SEQRES 36 X 636 ASN PHE THR THR ILE ALA ARG LYS LEU LEU LYS GLN ASN SEQRES 37 X 636 VAL LEU VAL VAL ALA THR GLY CYS GLY ALA GLY ALA LEU SEQRES 38 X 636 MET ARG HIS GLY PHE MET ASP PRO ALA ASN VAL ASP GLU SEQRES 39 X 636 LEU CYS GLY ASP GLY LEU LYS ALA VAL LEU THR ALA ILE SEQRES 40 X 636 GLY GLU ALA ASN GLY LEU GLY GLY PRO LEU PRO PRO VAL SEQRES 41 X 636 LEU HIS MET GLY SER CYS VAL ASP ASN SER ARG ALA VAL SEQRES 42 X 636 ALA LEU VAL ALA ALA LEU ALA ASN ARG LEU GLY VAL ASP SEQRES 43 X 636 LEU ASP ARG LEU PRO VAL VAL ALA SER ALA ALA GLU ALA SEQRES 44 X 636 MET HIS GLU LYS ALA VAL ALA ILE GLY THR TRP ALA VAL SEQRES 45 X 636 THR ILE GLY LEU PRO THR HIS ILE GLY VAL LEU PRO PRO SEQRES 46 X 636 ILE THR GLY SER LEU PRO VAL THR GLN ILE LEU THR SER SEQRES 47 X 636 SER VAL LYS ASP ILE THR GLY GLY TYR PHE ILE VAL GLU SEQRES 48 X 636 LEU ASP PRO GLU THR ALA ALA ASP LYS LEU LEU ALA ALA SEQRES 49 X 636 ILE ASN GLU ARG ARG ALA GLY LEU GLY LEU PRO TRP HET SF4 X1001 8 HET FES X1002 4 HET F3S X1003 7 HET FE X1004 2 HET NI X1005 2 HET CO2 X1006 3 HET CMO X1007 2 HET TRS X1008 20 HET PEG X1009 17 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM FE FE (III) ION HETNAM NI NICKEL (II) ION HETNAM CO2 CARBON DIOXIDE HETNAM CMO CARBON MONOXIDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN TRS TRIS BUFFER FORMUL 2 SF4 FE4 S4 FORMUL 3 FES FE2 S2 FORMUL 4 F3S FE3 S4 FORMUL 5 FE FE 3+ FORMUL 6 NI NI 2+ FORMUL 7 CO2 C O2 FORMUL 8 CMO C O FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 10 PEG C4 H10 O3 FORMUL 11 HOH *826(H2 O) HELIX 1 AA1 ARG X 3 LYS X 7 5 5 HELIX 2 AA2 ASP X 10 GLY X 24 1 15 HELIX 3 AA3 THR X 27 LYS X 36 1 10 HELIX 4 AA4 CYS X 39 GLY X 45 1 7 HELIX 5 AA5 THR X 73 GLN X 109 1 37 HELIX 6 AA6 ASP X 119 GLY X 131 1 13 HELIX 7 AA7 LYS X 138 ASP X 153 1 16 HELIX 8 AA8 VAL X 161 THR X 166 1 6 HELIX 9 AA9 PRO X 169 HIS X 179 1 11 HELIX 10 AB1 GLY X 185 THR X 197 1 13 HELIX 11 AB2 ASP X 204 GLY X 235 1 32 HELIX 12 AB3 ASN X 245 LEU X 249 5 5 HELIX 13 AB4 ASN X 262 MET X 276 1 15 HELIX 14 AB5 MET X 276 ALA X 283 1 8 HELIX 15 AB6 CYS X 294 GLY X 305 1 12 HELIX 16 AB7 HIS X 311 SER X 314 5 4 HELIX 17 AB8 GLN X 315 THR X 321 1 7 HELIX 18 AB9 SER X 337 GLY X 346 1 10 HELIX 19 AC1 ALA X 367 GLU X 369 5 3 HELIX 20 AC2 ALA X 370 ARG X 389 1 20 HELIX 21 AC3 SER X 408 LYS X 418 1 11 HELIX 22 AC4 PRO X 424 ASN X 434 1 11 HELIX 23 AC5 ASP X 454 GLN X 467 1 14 HELIX 24 AC6 GLY X 475 HIS X 484 1 10 HELIX 25 AC7 ASP X 488 ALA X 490 5 3 HELIX 26 AC8 ASN X 491 CYS X 496 1 6 HELIX 27 AC9 GLY X 497 ASN X 511 1 15 HELIX 28 AD1 ASP X 528 GLY X 544 1 17 HELIX 29 AD2 ASP X 546 LEU X 550 5 5 HELIX 30 AD3 HIS X 561 GLY X 575 1 15 HELIX 31 AD4 SER X 589 SER X 598 1 10 HELIX 32 AD5 VAL X 600 GLY X 605 1 6 HELIX 33 AD6 ASP X 613 LEU X 632 1 20 SHEET 1 AA1 2 CYS X 47 CYS X 48 0 SHEET 2 AA1 2 CYS X 56 ARG X 57 -1 O CYS X 56 N CYS X 48 SHEET 1 AA2 2 VAL X 240 SER X 244 0 SHEET 2 AA2 2 THR X 401 ALA X 405 -1 O VAL X 403 N THR X 242 SHEET 1 AA3 6 ALA X 308 THR X 310 0 SHEET 2 AA3 6 ILE X 288 ILE X 293 1 N GLY X 292 O CYS X 309 SHEET 3 AA3 6 VAL X 254 HIS X 259 1 N VAL X 254 O ASN X 289 SHEET 4 AA3 6 LEU X 324 LEU X 329 1 O ILE X 328 N ALA X 257 SHEET 5 AA3 6 THR X 348 THR X 351 1 O ILE X 350 N LEU X 329 SHEET 6 AA3 6 THR X 362 HIS X 363 1 O THR X 362 N THR X 351 SHEET 1 AA4 6 VAL X 520 GLY X 524 0 SHEET 2 AA4 6 LEU X 470 THR X 474 1 N ALA X 473 O MET X 523 SHEET 3 AA4 6 VAL X 440 PHE X 443 1 N PHE X 443 O VAL X 472 SHEET 4 AA4 6 VAL X 552 ALA X 556 1 O SER X 555 N LEU X 442 SHEET 5 AA4 6 PRO X 577 ILE X 580 1 O HIS X 579 N ALA X 554 SHEET 6 AA4 6 TYR X 607 VAL X 610 1 O TYR X 607 N THR X 578 LINK SG CYS X 39 FE2 FES X1002 1555 1555 2.29 LINK SG CYS X 47 FE1 FES X1002 1555 1555 2.28 LINK SG CYS X 48 FE3 SF4 X1001 1555 1555 2.31 LINK SG CYS X 51 FE2 SF4 X1001 1555 1555 2.28 LINK SG CYS X 56 FE1 SF4 X1001 1555 1555 2.31 LINK SG CYS X 70 FE4 SF4 X1001 1555 1555 2.31 LINK NE2AHIS X 261 FE A FE X1004 1555 1555 2.21 LINK NE2BHIS X 261 FE B FE X1004 1555 1555 2.39 LINK SG ACYS X 295 FE A FE X1004 1555 1555 2.30 LINK SG BCYS X 295 FE B FE X1004 1555 1555 2.57 LINK SG CYS X 333 FE4 F3S X1003 1555 1555 2.25 LINK SG CYS X 446 FE3 F3S X1003 1555 1555 2.37 LINK SG ACYS X 476 FE1 F3S X1003 1555 1555 2.30 LINK SG BCYS X 476 FE1 F3S X1003 1555 1555 2.22 LINK SG ACYS X 526 NI A NI X1005 1555 1555 2.14 LINK S2 F3S X1003 FE A FE X1004 1555 1555 2.35 LINK S2 F3S X1003 FE B FE X1004 1555 1555 2.35 LINK S1 F3S X1003 NI A NI X1005 1555 1555 2.47 LINK S1 F3S X1003 NI B NI X1005 1555 1555 2.28 LINK S4 F3S X1003 NI A NI X1005 1555 1555 2.06 LINK S4 F3S X1003 NI B NI X1005 1555 1555 2.33 LINK FE A FE X1004 O1 ACO2 X1006 1555 1555 2.00 LINK FE B FE X1004 O BHOH X1104 1555 1555 2.77 LINK NI A NI X1005 O1 ACO2 X1006 1555 1555 2.72 LINK NI B NI X1005 O BHOH X1666 1555 1555 2.68 CISPEP 1 LYS X 36 PRO X 37 0 -7.04 CISPEP 2 GLY X 54 PRO X 55 0 8.14 CISPEP 3 GLU X 64 PRO X 65 0 5.57 CISPEP 4 GLU X 64 PRO X 65 0 5.62 CRYST1 112.208 75.363 71.119 90.00 111.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008912 0.000000 0.003491 0.00000 SCALE2 0.000000 0.013269 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015101 0.00000 CONECT 67010316 CONECT 76910315 CONECT 77910309 CONECT 83010308 CONECT 89710307 CONECT 113510310 CONECT 422810326 CONECT 422910327 CONECT 485810326 CONECT 485910327 CONECT 545110321 CONECT 725210320 CONECT 778110319 CONECT 778210319 CONECT 851610328 CONECT10307 897103121031310314 CONECT10308 830103111031310314 CONECT10309 779103111031210314 CONECT10310 1135103111031210313 CONECT10311103081030910310 CONECT10312103071030910310 CONECT10313103071030810310 CONECT10314103071030810309 CONECT10315 7691031710318 CONECT10316 6701031710318 CONECT103171031510316 CONECT103181031510316 CONECT10319 7781 77821032210323 CONECT1031910324 CONECT10320 7252103221032410325 CONECT10321 5451103231032410325 CONECT1032210319103201032810329 CONECT1032310319103211032610327 CONECT10324103191032010321 CONECT1032510320103211032810329 CONECT10326 4228 48581032310331 CONECT10327 4229 48591032310375 CONECT10328 8516103221032510331 CONECT10329103221032510955 CONECT103301033110332 CONECT10331103261032810330 CONECT1033210330 CONECT1033310334 CONECT1033410333 CONECT1033510336103371033810339 CONECT1033610335103401034310344 CONECT1033710335103411034510346 CONECT1033810335103421034710348 CONECT1033910335103491035010351 CONECT103401033610352 CONECT103411033710353 CONECT103421033810354 CONECT1034310336 CONECT1034410336 CONECT1034510337 CONECT1034610337 CONECT1034710338 CONECT1034810338 CONECT1034910339 CONECT1035010339 CONECT1035110339 CONECT1035210340 CONECT1035310341 CONECT1035410342 CONECT1035510356103571036210363 CONECT103561035510364 CONECT1035710355103581036510366 CONECT103581035710359 CONECT1035910358103601036710368 CONECT1036010359103611036910370 CONECT103611036010371 CONECT1036210355 CONECT1036310355 CONECT1036410356 CONECT1036510357 CONECT1036610357 CONECT1036710359 CONECT1036810359 CONECT1036910360 CONECT1037010360 CONECT1037110361 CONECT1037510327 CONECT1095510329 MASTER 431 0 9 33 16 0 0 6 5526 1 83 49 END