HEADER HYDROLASE 14-JUN-24 9FQ2 TITLE POLIOVIRUS 3C PROTEASE IN H32 SPACEGROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE 3C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PICORNAIN 3C,P3C; COMPND 5 EC: 3.4.22.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLIOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12080; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 3C PROTEASE VIRUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FAIRHEAD,R.M.LITHGO,E.M.MACLEAN,H.BOWESMAN-JONES,J.C.ASCHENBRENNER, AUTHOR 2 B.H.BALCOMB,E.CAPKIN,A.V.CHANDRAN,A.S.GODOY,P.G.MARPLES,D.FEARON, AUTHOR 3 F.VON DELFT,L.KOEKEMOER REVDAT 1 26-JUN-24 9FQ2 0 JRNL AUTH M.FAIRHEAD,R.M.LITHGO,E.M.MACLEAN,H.BOWESMAN-JONES, JRNL AUTH 2 J.C.ASCHENBRENNER,B.H.BALCOMB,E.CAPKIN,A.V.CHANDRAN, JRNL AUTH 3 A.S.GODOY,P.G.MARPLES,D.FEARON,F.VON DELFT,L.KOEKEMOER JRNL TITL POLIOVIRUS 3C PROTEASE IN H32 SPACEGROUP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.882 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1298 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29800 REMARK 3 B22 (A**2) : -0.29800 REMARK 3 B33 (A**2) : 0.96800 REMARK 3 B12 (A**2) : -0.14900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.292 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.272 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2777 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2661 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3767 ; 2.670 ; 1.817 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6120 ; 0.996 ; 1.747 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 9.590 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ;20.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;19.072 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3284 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 616 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 536 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 88 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1367 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 73 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1447 ;12.315 ; 7.624 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1447 ;12.307 ; 7.625 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1807 ;15.686 ;13.670 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1808 ;15.682 ;13.675 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1330 ;13.605 ; 8.543 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1331 ;13.603 ; 8.545 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1960 ;17.891 ;15.235 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1961 ;17.887 ;15.236 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 179 NULL REMARK 3 1 A 2 A 179 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9FQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18923 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 63.585 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SHOTGUN ECO SCREEN, WELL B9 1.6M REMARK 280 SODIUM CITRATE TRIBASIC DIHYDRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 61.36700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.43025 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.89933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 61.36700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.43025 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.89933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 61.36700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.43025 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.89933 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 61.36700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.43025 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.89933 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 61.36700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.43025 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.89933 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 61.36700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.43025 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.89933 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.86051 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 105.79867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.86051 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 105.79867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.86051 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 105.79867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.86051 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 105.79867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.86051 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 105.79867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.86051 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 105.79867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 214 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 183 REMARK 465 GLY B 1 REMARK 465 GLN B 181 REMARK 465 SER B 182 REMARK 465 GLN B 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ARG B 143 OE1 GLN B 146 1.49 REMARK 500 OD1 ASP B 64 OG1 THR B 68 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 GLN A 65 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG A 130 CG - CD - NE ANGL. DEV. = 12.7 DEGREES REMARK 500 GLN A 131 CB - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 GLN A 131 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 134 CG - CD - NE ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG A 143 CG - CD - NE ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 143 CD - NE - CZ ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 CYS A 147 CB - CA - C ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 13 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 176 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -114.69 55.32 REMARK 500 LEU A 57 -88.69 -71.16 REMARK 500 TYR A 109 70.02 -119.16 REMARK 500 PRO A 141 92.03 -66.96 REMARK 500 ARG A 143 -104.27 -110.77 REMARK 500 VAL A 162 10.63 -144.67 REMARK 500 ASP B 32 -111.90 52.14 REMARK 500 LEU B 57 -91.65 -69.02 REMARK 500 ASP B 99 66.53 -150.51 REMARK 500 ASN B 105 89.18 -155.13 REMARK 500 ASN B 126 61.57 -112.48 REMARK 500 ASN B 165 20.35 -155.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 145 GLN A 146 137.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 13 0.12 SIDE CHAIN REMARK 500 ARG A 79 0.18 SIDE CHAIN REMARK 500 ARG A 130 0.17 SIDE CHAIN REMARK 500 ARG A 134 0.19 SIDE CHAIN REMARK 500 ARG B 13 0.21 SIDE CHAIN REMARK 500 ARG B 134 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 21 -10.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 9FQ2 A 1 183 UNP P03300 POLG_POL1M 1566 1748 DBREF 9FQ2 B 1 183 UNP P03300 POLG_POL1M 1566 1748 SEQRES 1 A 183 GLY PRO GLY PHE ASP TYR ALA VAL ALA MET ALA LYS ARG SEQRES 2 A 183 ASN ILE VAL THR ALA THR THR SER LYS GLY GLU PHE THR SEQRES 3 A 183 MET LEU GLY VAL HIS ASP ASN VAL ALA ILE LEU PRO THR SEQRES 4 A 183 HIS ALA SER PRO GLY GLU SER ILE VAL ILE ASP GLY LYS SEQRES 5 A 183 GLU VAL GLU ILE LEU ASP ALA LYS ALA LEU GLU ASP GLN SEQRES 6 A 183 ALA GLY THR ASN LEU GLU ILE THR ILE ILE THR LEU LYS SEQRES 7 A 183 ARG ASN GLU LYS PHE ARG ASP ILE ARG PRO HIS ILE PRO SEQRES 8 A 183 THR GLN ILE THR GLU THR ASN ASP GLY VAL LEU ILE VAL SEQRES 9 A 183 ASN THR SER LYS TYR PRO ASN MET TYR VAL PRO VAL GLY SEQRES 10 A 183 ALA VAL THR GLU GLN GLY TYR LEU ASN LEU GLY GLY ARG SEQRES 11 A 183 GLN THR ALA ARG THR LEU MET TYR ASN PHE PRO THR ARG SEQRES 12 A 183 ALA GLY GLN CYS GLY GLY VAL ILE THR CYS THR GLY LYS SEQRES 13 A 183 VAL ILE GLY MET HIS VAL GLY GLY ASN GLY SER HIS GLY SEQRES 14 A 183 PHE ALA ALA ALA LEU LYS ARG SER TYR PHE THR GLN SER SEQRES 15 A 183 GLN SEQRES 1 B 183 GLY PRO GLY PHE ASP TYR ALA VAL ALA MET ALA LYS ARG SEQRES 2 B 183 ASN ILE VAL THR ALA THR THR SER LYS GLY GLU PHE THR SEQRES 3 B 183 MET LEU GLY VAL HIS ASP ASN VAL ALA ILE LEU PRO THR SEQRES 4 B 183 HIS ALA SER PRO GLY GLU SER ILE VAL ILE ASP GLY LYS SEQRES 5 B 183 GLU VAL GLU ILE LEU ASP ALA LYS ALA LEU GLU ASP GLN SEQRES 6 B 183 ALA GLY THR ASN LEU GLU ILE THR ILE ILE THR LEU LYS SEQRES 7 B 183 ARG ASN GLU LYS PHE ARG ASP ILE ARG PRO HIS ILE PRO SEQRES 8 B 183 THR GLN ILE THR GLU THR ASN ASP GLY VAL LEU ILE VAL SEQRES 9 B 183 ASN THR SER LYS TYR PRO ASN MET TYR VAL PRO VAL GLY SEQRES 10 B 183 ALA VAL THR GLU GLN GLY TYR LEU ASN LEU GLY GLY ARG SEQRES 11 B 183 GLN THR ALA ARG THR LEU MET TYR ASN PHE PRO THR ARG SEQRES 12 B 183 ALA GLY GLN CYS GLY GLY VAL ILE THR CYS THR GLY LYS SEQRES 13 B 183 VAL ILE GLY MET HIS VAL GLY GLY ASN GLY SER HIS GLY SEQRES 14 B 183 PHE ALA ALA ALA LEU LYS ARG SER TYR PHE THR GLN SER SEQRES 15 B 183 GLN FORMUL 3 HOH *20(H2 O) HELIX 1 AA1 GLY A 1 ASN A 14 1 14 HELIX 2 AA2 HIS A 40 SER A 42 5 3 HELIX 3 AA3 LYS A 175 PHE A 179 5 5 HELIX 4 AA4 GLY B 3 ASN B 14 1 12 HELIX 5 AA5 HIS B 40 SER B 42 5 3 HELIX 6 AA6 LYS B 175 THR B 180 5 6 SHEET 1 AA1 7 ILE A 15 THR A 20 0 SHEET 2 AA1 7 GLY A 23 HIS A 31 -1 O MET A 27 N VAL A 16 SHEET 3 AA1 7 VAL A 34 PRO A 38 -1 O VAL A 34 N HIS A 31 SHEET 4 AA1 7 ASN A 69 LYS A 78 -1 O ILE A 75 N ALA A 35 SHEET 5 AA1 7 LYS A 52 GLU A 63 -1 N GLU A 55 O LYS A 78 SHEET 6 AA1 7 SER A 46 ILE A 49 -1 N ILE A 49 O LYS A 52 SHEET 7 AA1 7 ILE A 15 THR A 20 -1 N THR A 19 O VAL A 48 SHEET 1 AA2 7 THR A 97 VAL A 104 0 SHEET 2 AA2 7 MET A 112 ASN A 126 -1 O GLY A 117 N GLY A 100 SHEET 3 AA2 7 GLN A 131 ASN A 139 -1 O MET A 137 N THR A 120 SHEET 4 AA2 7 HIS A 168 ALA A 173 -1 O ALA A 171 N LEU A 136 SHEET 5 AA2 7 LYS A 156 GLY A 164 -1 N VAL A 162 O PHE A 170 SHEET 6 AA2 7 VAL A 150 CYS A 153 -1 N ILE A 151 O GLY A 159 SHEET 7 AA2 7 THR A 97 VAL A 104 -1 N ILE A 103 O VAL A 150 SHEET 1 AA3 7 ILE B 15 THR B 19 0 SHEET 2 AA3 7 GLU B 24 HIS B 31 -1 O MET B 27 N VAL B 16 SHEET 3 AA3 7 VAL B 34 PRO B 38 -1 O VAL B 34 N HIS B 31 SHEET 4 AA3 7 ASN B 69 LEU B 77 -1 O ILE B 75 N ALA B 35 SHEET 5 AA3 7 LYS B 52 GLU B 63 -1 N ASP B 58 O THR B 76 SHEET 6 AA3 7 SER B 46 ILE B 49 -1 N ILE B 49 O LYS B 52 SHEET 7 AA3 7 ILE B 15 THR B 19 -1 N THR B 19 O VAL B 48 SHEET 1 AA4 7 THR B 97 VAL B 104 0 SHEET 2 AA4 7 MET B 112 LEU B 125 -1 O GLY B 117 N GLY B 100 SHEET 3 AA4 7 THR B 132 TYR B 138 -1 O THR B 132 N LEU B 125 SHEET 4 AA4 7 GLY B 169 ALA B 173 -1 O GLY B 169 N TYR B 138 SHEET 5 AA4 7 VAL B 157 GLY B 164 -1 N VAL B 162 O PHE B 170 SHEET 6 AA4 7 VAL B 150 THR B 152 -1 N ILE B 151 O GLY B 159 SHEET 7 AA4 7 THR B 97 VAL B 104 -1 N ILE B 103 O VAL B 150 CRYST1 122.734 122.734 158.698 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008148 0.004704 0.000000 0.00000 SCALE2 0.000000 0.009408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006301 0.00000