HEADER SIGNALING PROTEIN 24-JUN-24 9FT9 TITLE STRUCTURE OF THE BIPARTITE JNK1-JIP1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 1 OF MITOGEN-ACTIVATED PROTEIN KINASE 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 8,MAPK 8,JNK-46,STRESS-ACTIVATED PROTEIN KINASE COMPND 5 1C,SAPK1C,STRESS-ACTIVATED PROTEIN KINASE JNK1,C-JUN N-TERMINAL COMPND 6 KINASE 1; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: GAMA IS FROM THE EXPRESSION VECTOR; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 1; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: GHM BELONG TO THE EXPRESSION VECTOR TAG. THIS IS A COMPND 15 PEPTIDE OF THE INTRINSICALLY DISORDER SCAFFOLD PROTEIN JIP1. THERE IS COMPND 16 A DELETION OF THE FLEXIBLE LINKER COMPRISING RESIDUES 176TLNNNSLGK184 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK8, JNK1, PRKM8, SAPK1, SAPK1C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MAPK8IP1, IB1, JIP1, PRKM8IP; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS C-JUN N-TERMINAL KINASE 1 (JNK-1) SERINE/THREONINE-PROTEIN KINASE KEYWDS 2 CELL PROLIFERATION, DIFFERENTIATION, MIGRATION, TRANSFORMATION KEYWDS 3 PROGRAMMED CELL DEATH, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.ORAND,E.DELAFORGE,A.PALENCIA,M.R.JENSEN REVDAT 3 12-MAR-25 9FT9 1 JRNL REVDAT 2 12-FEB-25 9FT9 1 JRNL REVDAT 1 05-FEB-25 9FT9 0 JRNL AUTH T.ORAND,E.DELAFORGE,A.LEE,J.KRAGELJ,M.TENGO,L.TENGO, JRNL AUTH 2 M.BLACKLEDGE,E.BOERI ERBA,R.J.DAVIS,A.PALENCIA,M.R.JENSEN JRNL TITL BIPARTITE BINDING OF THE INTRINSICALLY DISORDERED SCAFFOLD JRNL TITL 2 PROTEIN JIP1 TO THE KINASE JNK1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 15122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 39999166 JRNL DOI 10.1073/PNAS.2419915122 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4080 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8600 - 5.2200 1.00 2616 167 0.1932 0.2131 REMARK 3 2 5.2200 - 4.1500 1.00 2524 179 0.1904 0.2277 REMARK 3 3 4.1500 - 3.6200 1.00 2559 97 0.2087 0.3057 REMARK 3 4 3.6200 - 3.2900 1.00 2550 126 0.2435 0.3415 REMARK 3 5 3.2900 - 3.0600 1.00 2489 154 0.2852 0.3365 REMARK 3 6 3.0600 - 2.8800 1.00 2542 117 0.3026 0.3309 REMARK 3 7 2.8800 - 2.7300 1.00 2509 154 0.3055 0.3341 REMARK 3 8 2.7300 - 2.6100 1.00 2508 129 0.3298 0.3609 REMARK 3 9 2.6100 - 2.5100 1.00 2502 131 0.3810 0.4428 REMARK 3 10 2.5100 - 2.4300 1.00 2546 113 0.4404 0.5444 REMARK 3 11 2.4300 - 2.3500 0.99 2489 117 0.4390 0.4531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.532 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.486 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3169 REMARK 3 ANGLE : 1.115 4296 REMARK 3 CHIRALITY : 0.057 476 REMARK 3 PLANARITY : 0.010 544 REMARK 3 DIHEDRAL : 9.191 424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1301 65.8582 -1.9239 REMARK 3 T TENSOR REMARK 3 T11: 0.6722 T22: 0.7015 REMARK 3 T33: 0.6359 T12: -0.1313 REMARK 3 T13: -0.0472 T23: 0.0794 REMARK 3 L TENSOR REMARK 3 L11: 2.4610 L22: 2.0406 REMARK 3 L33: 1.9097 L12: 0.6767 REMARK 3 L13: 1.3263 L23: 0.4477 REMARK 3 S TENSOR REMARK 3 S11: -0.2402 S12: 0.2150 S13: 0.2519 REMARK 3 S21: -0.3746 S22: 0.1543 S23: 0.0460 REMARK 3 S31: -0.2871 S32: 0.4855 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.1334 38.9724 10.2568 REMARK 3 T TENSOR REMARK 3 T11: 0.5287 T22: 0.7161 REMARK 3 T33: 0.7307 T12: 0.0413 REMARK 3 T13: -0.0596 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.8576 L22: 3.1587 REMARK 3 L33: 2.8291 L12: 0.5298 REMARK 3 L13: 0.4100 L23: 1.3645 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: -0.0557 S13: -0.4445 REMARK 3 S21: 0.2140 S22: 0.1384 S23: -0.4436 REMARK 3 S31: 0.3470 S32: 0.5682 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.3036 51.9703 2.3226 REMARK 3 T TENSOR REMARK 3 T11: 0.6533 T22: 0.6600 REMARK 3 T33: 0.7532 T12: 0.0102 REMARK 3 T13: -0.1082 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.1189 L22: 1.8074 REMARK 3 L33: 0.1245 L12: 0.7005 REMARK 3 L13: 0.3080 L23: 0.0720 REMARK 3 S TENSOR REMARK 3 S11: -0.1607 S12: 0.1241 S13: -0.2317 REMARK 3 S21: -0.2858 S22: 0.0271 S23: 0.5112 REMARK 3 S31: 0.2823 S32: -0.1085 S33: 0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.3509 56.0180 25.9541 REMARK 3 T TENSOR REMARK 3 T11: 0.9133 T22: 0.9696 REMARK 3 T33: 0.5955 T12: -0.1466 REMARK 3 T13: -0.1909 T23: 0.1497 REMARK 3 L TENSOR REMARK 3 L11: 0.2357 L22: 0.3962 REMARK 3 L33: 0.1581 L12: -0.1729 REMARK 3 L13: 0.0204 L23: 0.1902 REMARK 3 S TENSOR REMARK 3 S11: -0.4441 S12: -0.1604 S13: -0.2222 REMARK 3 S21: 0.7061 S22: -0.5588 S23: -0.5304 REMARK 3 S31: 0.0248 S32: 0.5184 S33: -0.0305 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 210 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.1587 34.2644 -9.2422 REMARK 3 T TENSOR REMARK 3 T11: 1.4947 T22: 1.2241 REMARK 3 T33: 1.3355 T12: -0.2063 REMARK 3 T13: 0.2638 T23: -0.1179 REMARK 3 L TENSOR REMARK 3 L11: 0.0095 L22: 0.0565 REMARK 3 L33: 0.0146 L12: 0.0077 REMARK 3 L13: 0.0081 L23: 0.0265 REMARK 3 S TENSOR REMARK 3 S11: 0.4342 S12: 0.2482 S13: -0.3615 REMARK 3 S21: -0.0020 S22: 0.1224 S23: -0.0076 REMARK 3 S31: -0.2782 S32: 0.0991 S33: 0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT IN PHENIX.REFINE REMARK 3 B-FACTORS ARE TOTAL (LOCAL + TLS + CRYSTAL) REMARK 4 REMARK 4 9FT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96546 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2023 REMARK 200 DATA SCALING SOFTWARE : XSCALE 2023 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 46.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.03 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.1 M BIS TRIS REMARK 280 PROPANE PH 6.5, 0.2 M SODIUM ACETATE TRIHYDRATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.31667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.63333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.63333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.31667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 GLU A 364 REMARK 465 PRO B 195 REMARK 465 ARG B 196 REMARK 465 SER B 197 REMARK 465 GLN B 198 REMARK 465 ASP B 199 REMARK 465 LYS B 200 REMARK 465 HIS B 201 REMARK 465 SER B 202 REMARK 465 TRP B 203 REMARK 465 GLN B 204 REMARK 465 ASP B 205 REMARK 465 ARG B 206 REMARK 465 VAL B 207 REMARK 465 SER B 208 REMARK 465 ARG B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 LEU A 363 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 167 O HOH B 301 1.98 REMARK 500 O PHE A 248 O HOH A 501 2.09 REMARK 500 OG SER A 270 OE1 GLU A 272 2.11 REMARK 500 N CYS B 212 OE2 GLU B 216 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 59 53.89 34.82 REMARK 500 GLN A 102 -51.28 -125.70 REMARK 500 ASP A 169 78.24 58.94 REMARK 500 LYS A 203 -169.41 -103.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 192 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 615 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 616 DISTANCE = 6.18 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UX9 RELATED DB: PDB REMARK 900 SAME CHAIN A DBREF 9FT9 A 5 364 UNP P45983 MK08_HUMAN 5 364 DBREF 9FT9 B 157 218 PDB 9FT9 9FT9 157 218 SEQRES 1 A 360 LYS ARG ASP ASN ASN PHE TYR SER VAL GLU ILE GLY ASP SEQRES 2 A 360 SER THR PHE THR VAL LEU LYS ARG TYR GLN ASN LEU LYS SEQRES 3 A 360 PRO ILE GLY SER GLY ALA GLN GLY ILE VAL CYS ALA ALA SEQRES 4 A 360 TYR ASP ALA ILE LEU GLU ARG ASN VAL ALA ILE LYS LYS SEQRES 5 A 360 LEU SER ARG PRO PHE GLN ASN GLN THR HIS ALA LYS ARG SEQRES 6 A 360 ALA TYR ARG GLU LEU VAL LEU MET LYS CYS VAL ASN HIS SEQRES 7 A 360 LYS ASN ILE ILE GLY LEU LEU ASN VAL PHE THR PRO GLN SEQRES 8 A 360 LYS SER LEU GLU GLU PHE GLN ASP VAL TYR ILE VAL MET SEQRES 9 A 360 GLU LEU MET ASP ALA ASN LEU CYS GLN VAL ILE GLN MET SEQRES 10 A 360 GLU LEU ASP HIS GLU ARG MET SER TYR LEU LEU TYR GLN SEQRES 11 A 360 MET LEU CYS GLY ILE LYS HIS LEU HIS SER ALA GLY ILE SEQRES 12 A 360 ILE HIS ARG ASP LEU LYS PRO SER ASN ILE VAL VAL LYS SEQRES 13 A 360 SER ASP CYS THR LEU LYS ILE LEU ASP PHE GLY LEU ALA SEQRES 14 A 360 ARG THR ALA GLY THR SER PHE MET MET THR PRO TYR VAL SEQRES 15 A 360 VAL THR ARG TYR TYR ARG ALA PRO GLU VAL ILE LEU GLY SEQRES 16 A 360 MET GLY TYR LYS GLU ASN VAL ASP LEU TRP SER VAL GLY SEQRES 17 A 360 CYS ILE MET GLY GLU MET VAL CYS HIS LYS ILE LEU PHE SEQRES 18 A 360 PRO GLY ARG ASP TYR ILE ASP GLN TRP ASN LYS VAL ILE SEQRES 19 A 360 GLU GLN LEU GLY THR PRO CYS PRO GLU PHE MET LYS LYS SEQRES 20 A 360 LEU GLN PRO THR VAL ARG THR TYR VAL GLU ASN ARG PRO SEQRES 21 A 360 LYS TYR ALA GLY TYR SER PHE GLU LYS LEU PHE PRO ASP SEQRES 22 A 360 VAL LEU PHE PRO ALA ASP SER GLU HIS ASN LYS LEU LYS SEQRES 23 A 360 ALA SER GLN ALA ARG ASP LEU LEU SER LYS MET LEU VAL SEQRES 24 A 360 ILE ASP ALA SER LYS ARG ILE SER VAL ASP GLU ALA LEU SEQRES 25 A 360 GLN HIS PRO TYR ILE ASN VAL TRP TYR ASP PRO SER GLU SEQRES 26 A 360 ALA GLU ALA PRO PRO PRO LYS ILE PRO ASP LYS GLN LEU SEQRES 27 A 360 ASP GLU ARG GLU HIS THR ILE GLU GLU TRP LYS GLU LEU SEQRES 28 A 360 ILE TYR LYS GLU VAL MET ASP LEU GLU SEQRES 1 B 38 ARG PRO LYS ARG PRO THR THR LEU ASN LEU PHE PRO GLN SEQRES 2 B 38 VAL PRO ARG SER GLN ASP LYS HIS SER TRP GLN ASP ARG SEQRES 3 B 38 VAL SER ARG SER ILE CYS LEU SER ASP GLU LEU PRO HET ANP A 401 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *123(H2 O) HELIX 1 AA1 PRO A 60 GLN A 62 5 3 HELIX 2 AA2 ASN A 63 VAL A 80 1 18 HELIX 3 AA3 LEU A 115 MET A 121 1 7 HELIX 4 AA4 ASP A 124 SER A 144 1 21 HELIX 5 AA5 LYS A 153 SER A 155 5 3 HELIX 6 AA6 ALA A 193 GLY A 199 1 7 HELIX 7 AA7 ASN A 205 HIS A 221 1 17 HELIX 8 AA8 ASP A 229 GLY A 242 1 14 HELIX 9 AA9 CYS A 245 LYS A 251 1 7 HELIX 10 AB1 GLN A 253 ASN A 262 1 10 HELIX 11 AB2 SER A 270 PHE A 275 1 6 HELIX 12 AB3 PRO A 276 PHE A 280 5 5 HELIX 13 AB4 LYS A 290 LEU A 302 1 13 HELIX 14 AB5 ASP A 305 ARG A 309 5 5 HELIX 15 AB6 SER A 311 GLN A 317 1 7 HELIX 16 AB7 HIS A 318 VAL A 323 1 6 HELIX 17 AB8 ASP A 326 GLU A 331 1 6 HELIX 18 AB9 THR A 348 LEU A 363 1 16 SHEET 1 AA1 2 PHE A 10 ILE A 15 0 SHEET 2 AA1 2 SER A 18 LEU A 23 -1 O PHE A 20 N VAL A 13 SHEET 1 AA2 5 TYR A 26 GLY A 35 0 SHEET 2 AA2 5 GLY A 38 ASP A 45 -1 O TYR A 44 N GLN A 27 SHEET 3 AA2 5 ARG A 50 SER A 58 -1 O VAL A 52 N ALA A 43 SHEET 4 AA2 5 ASP A 103 GLU A 109 -1 O MET A 108 N ALA A 53 SHEET 5 AA2 5 LEU A 88 PHE A 92 -1 N ASN A 90 O VAL A 107 SHEET 1 AA3 3 ALA A 113 ASN A 114 0 SHEET 2 AA3 3 ILE A 157 VAL A 159 -1 O VAL A 159 N ALA A 113 SHEET 3 AA3 3 LEU A 165 ILE A 167 -1 O LYS A 166 N VAL A 158 CRYST1 137.700 137.700 63.950 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007262 0.004193 0.000000 0.00000 SCALE2 0.000000 0.008386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015637 0.00000