HEADER TRANSFERASE 24-JUN-24 9FTB TITLE AEROMONAS CAVIAE CMP-PSE5A7AC SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS CAVIAE; SOURCE 3 ORGANISM_TAXID: 648; SOURCE 4 GENE: NEUA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CARBOHYDRATE SYNTHESIS, PSEUDAMINIC ACID SYNTHESIS, CMP-TRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KEENAN,M.A.FASCIONE,A.R.COWAN,G.R.HEMSWORTH REVDAT 1 09-OCT-24 9FTB 0 JRNL AUTH T.KEENAN,A.R.COWAN,E.FLACK,N.HATTON,A.WALKLETT,G.THOMAS, JRNL AUTH 2 G.R.HEMSWORTH,M.A.FASCIONE JRNL TITL STRUCTURAL INSIGHTS INTO A CMP-PSEUDAMINIC ACID SYNTHASE JRNL TITL 2 (PSEF) JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.786 REMARK 3 FREE R VALUE TEST SET COUNT : 1187 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1827 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47600 REMARK 3 B22 (A**2) : 0.47600 REMARK 3 B33 (A**2) : -1.54400 REMARK 3 B12 (A**2) : 0.23800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.202 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1912 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1771 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2615 ; 2.174 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4073 ; 0.717 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 7.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 6.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;15.513 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2305 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 455 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 363 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 78 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 946 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 948 ; 3.008 ; 2.095 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 948 ; 3.008 ; 2.095 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1187 ; 4.124 ; 3.746 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1188 ; 4.123 ; 3.747 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 964 ; 4.037 ; 2.403 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 965 ; 4.035 ; 2.404 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1424 ; 5.824 ; 4.225 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1425 ; 5.822 ; 4.226 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8730 -31.7730 9.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.1565 REMARK 3 T33: 0.0179 T12: -0.0557 REMARK 3 T13: 0.0005 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 5.4136 L22: 1.5800 REMARK 3 L33: 5.4838 L12: 1.2535 REMARK 3 L13: 0.4768 L23: -1.3772 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: 0.1943 S13: -0.2014 REMARK 3 S21: -0.1174 S22: -0.0842 S23: -0.1414 REMARK 3 S31: -0.1462 S32: 0.5411 S33: 0.1511 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6850 -39.4300 -6.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.1249 REMARK 3 T33: 0.0388 T12: 0.0148 REMARK 3 T13: -0.0189 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.2409 L22: 0.9716 REMARK 3 L33: 9.3481 L12: 0.4290 REMARK 3 L13: 0.7297 L23: 1.7489 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: -0.0713 S13: 0.0899 REMARK 3 S21: -0.1675 S22: -0.1766 S23: 0.1744 REMARK 3 S31: -0.1592 S32: -0.6573 S33: 0.1996 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 221 A 246 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8340 -26.3980 -8.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.5366 REMARK 3 T33: 0.0976 T12: -0.0802 REMARK 3 T13: -0.0302 T23: 0.0962 REMARK 3 L TENSOR REMARK 3 L11: 18.5748 L22: 0.5921 REMARK 3 L33: 7.1584 L12: 3.2852 REMARK 3 L13: -7.3640 L23: -1.1066 REMARK 3 S TENSOR REMARK 3 S11: -0.5837 S12: 1.1287 S13: 0.2347 REMARK 3 S21: -0.1064 S22: 0.2623 S23: 0.0668 REMARK 3 S31: -0.3298 S32: 0.7476 S33: 0.3214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9FTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 64.223 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 40.00 REMARK 200 R MERGE (I) : 0.21800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 64.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 31.90 REMARK 200 R MERGE FOR SHELL (I) : 0.12200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% W/V TRYPTONE, 0.05 M HEPES SODIUM REMARK 280 PH 6.5, 14% W/V PEG3350, 0.001 M SODIUM AZIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.04200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.02100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.53150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.51050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.55250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.04200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 29.02100 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 14.51050 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 43.53150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.55250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -29.02100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 LEU A 247 REMARK 465 ARG A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 SER A 45 OG REMARK 470 ILE A 93 CG1 CG2 CD1 REMARK 470 ASN A 95 CG OD1 ND2 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 TYR A 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 69 H ASP A 71 1.33 REMARK 500 O GLY A 13 O HOH A 302 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 348 O HOH A 348 7554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 120 CD GLU A 120 OE2 0.136 REMARK 500 GLU A 192 CD GLU A 192 OE2 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 158 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 127.30 -29.95 REMARK 500 ASP A 96 57.35 -157.77 REMARK 500 ALA A 129 57.67 -160.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 186 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 236 -12.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 9FTB A 21 248 UNP Q9R9S4 Q9R9S4_AERCA 1 228 SEQADV 9FTB MET A 1 UNP Q9R9S4 INITIATING METHIONINE SEQADV 9FTB GLY A 2 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB SER A 3 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB SER A 4 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB HIS A 5 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB HIS A 6 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB HIS A 7 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB HIS A 8 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB HIS A 9 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB HIS A 10 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB SER A 11 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB SER A 12 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB GLY A 13 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB LEU A 14 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB VAL A 15 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB PRO A 16 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB ARG A 17 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB GLY A 18 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB SER A 19 UNP Q9R9S4 EXPRESSION TAG SEQADV 9FTB HIS A 20 UNP Q9R9S4 EXPRESSION TAG SEQRES 1 A 248 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 248 LEU VAL PRO ARG GLY SER HIS MET ASN ILE ALA ILE ILE SEQRES 3 A 248 PRO ALA ARG GLY GLY SER LYS ARG ILE PRO ARG LYS ASN SEQRES 4 A 248 ILE LYS PRO PHE HIS SER LYS PRO MET ILE ALA TRP SER SEQRES 5 A 248 ILE LEU ALA ALA LYS LYS ALA GLY CYS PHE GLU ARG ILE SEQRES 6 A 248 ILE VAL SER THR ASP ASP ALA GLU ILE ALA ALA VAL ALA SEQRES 7 A 248 LEU GLU TYR GLY ALA GLU VAL PRO PHE THR ARG PRO ALA SEQRES 8 A 248 GLU ILE ALA ASN ASP TYR ALA THR THR GLY GLU VAL ILE SEQRES 9 A 248 SER HIS ALA ILE ASN TRP LEU ILE ASN GLN GLN GLY GLN SEQRES 10 A 248 VAL PRO GLU ASN VAL CYS CYS LEU TYR ALA THR ALA PRO SEQRES 11 A 248 PHE VAL GLU PRO ASP ASP LEU CYS GLN GLY LEU GLU LEU SEQRES 12 A 248 LEU THR PHE ASN LYS GLU CYS GLN PHE VAL PHE SER ALA SEQRES 13 A 248 THR ARG PHE SER PHE PRO ILE GLN ARG ALA ILE LYS LEU SEQRES 14 A 248 ASP GLU SER GLY TRP VAL SER MET PHE HIS PRO GLU TYR SEQRES 15 A 248 GLN LEU THR ARG SER GLN ASP LEU GLU GLU ALA TYR HIS SEQRES 16 A 248 ASP ALA GLY GLN PHE TYR TRP GLY LYS ALA ASN ALA TRP SEQRES 17 A 248 LEU ASN LYS LEU PRO ILE PHE ALA VAL HIS THR GLN VAL SEQRES 18 A 248 VAL LEU LEU PRO SER HIS ARG VAL GLN ASP ILE ASP THR SEQRES 19 A 248 GLN ASP ASP TRP LEU ARG ALA GLU LYS LEU PHE THR LEU SEQRES 20 A 248 ARG FORMUL 2 HOH *133(H2 O) HELIX 1 AA1 MET A 48 GLY A 60 1 13 HELIX 2 AA2 ASP A 71 TYR A 81 1 11 HELIX 3 AA3 ILE A 93 TYR A 97 5 5 HELIX 4 AA4 THR A 99 GLY A 116 1 18 HELIX 5 AA5 GLU A 133 ASN A 147 1 15 HELIX 6 AA6 PRO A 162 ARG A 165 5 4 HELIX 7 AA7 HIS A 179 GLN A 183 5 5 HELIX 8 AA8 ARG A 186 LEU A 190 5 5 HELIX 9 AA9 ALA A 205 ASN A 210 1 6 HELIX 10 AB1 PRO A 225 VAL A 229 5 5 HELIX 11 AB2 THR A 234 THR A 246 1 13 SHEET 1 AA1 6 ARG A 64 THR A 69 0 SHEET 2 AA1 6 ASN A 22 ALA A 28 1 N ALA A 24 O ILE A 66 SHEET 3 AA1 6 ASN A 121 LEU A 125 1 O CYS A 123 N ILE A 25 SHEET 4 AA1 6 TYR A 194 LYS A 204 -1 O GLY A 203 N VAL A 122 SHEET 5 AA1 6 PHE A 152 ARG A 158 -1 N SER A 155 O ALA A 197 SHEET 6 AA1 6 THR A 219 LEU A 223 1 O VAL A 222 N ALA A 156 SHEET 1 AA2 2 PRO A 42 PHE A 43 0 SHEET 2 AA2 2 LYS A 46 PRO A 47 -1 O LYS A 46 N PHE A 43 SHEET 1 AA3 2 ILE A 167 LEU A 169 0 SHEET 2 AA3 2 VAL A 175 MET A 177 -1 O SER A 176 N LYS A 168 SSBOND 1 CYS A 61 CYS A 138 1555 1555 2.84 CRYST1 109.527 109.527 87.063 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009130 0.005271 0.000000 0.00000 SCALE2 0.000000 0.010543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011486 0.00000