HEADER TRANSFERASE 28-JUN-24 9FW6 TITLE A TERNARY COMPLEX OF PLANT ADENOSINE KINASE 1 FROM MOSS PHYSCOMITRELLA TITLE 2 PATENS (PPADK1) WITH ADENOSINE AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK,ADENOSINE 5'-PHOSPHOTRANSFERASE; COMPND 5 EC: 2.7.1.20; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL HIS-TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYSCOMITRIUM PATENS; SOURCE 3 ORGANISM_TAXID: 3218; SOURCE 4 GENE: ADK, PHYPADRAFT_184505; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCDFDUET KEYWDS PLANT ENZYME, KINASE, COMPLEX, ADENOSINE, PLANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KOPECNY,A.VIGOUROUX,S.MORERA REVDAT 2 03-SEP-25 9FW6 1 JRNL REVDAT 1 09-APR-25 9FW6 0 JRNL AUTH D.J.KOPECNY,A.VIGOUROUX,J.BELICEK,M.KOPECNA,R.KONCITIKOVA, JRNL AUTH 2 J.FRIEDECKA,V.MIK,K.SUPIKOVA,J.F.HUMPLIK,M.LE BERRE, JRNL AUTH 3 S.PLANCQUEEL,M.STRNAD,K.VON SCHWARTZENBERG,O.NOVAK,S.MORERA, JRNL AUTH 4 D.KOPECNY JRNL TITL A MONOMER-DIMER SWITCH MODULATES THE ACTIVITY OF PLANT JRNL TITL 2 ADENOSINE KINASE. JRNL REF J.EXP.BOT. V. 76 3457 2025 JRNL REFN ESSN 1460-2431 JRNL PMID 40063605 JRNL DOI 10.1093/JXB/ERAF094 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 56.6 REMARK 3 NUMBER OF REFLECTIONS : 37199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1819 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.04 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2568 REMARK 3 BIN FREE R VALUE : 0.3069 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 32 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.49750 REMARK 3 B22 (A**2) : -6.94390 REMARK 3 B33 (A**2) : -3.55360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.292 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.207 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.889 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 10457 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 18925 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3104 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1649 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 10457 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 702 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8522 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.54 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.16 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -18.622 7.45 -14.1253 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: -0.3048 REMARK 3 T33: -0.2092 T12: 0.0046 REMARK 3 T13: 0.071 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.6013 L22: 3.1938 REMARK 3 L33: 2.0606 L12: 0.2161 REMARK 3 L13: -0.4751 L23: -0.8672 REMARK 3 S TENSOR REMARK 3 S11: 0.127 S12: 0.3796 S13: -0.2988 REMARK 3 S21: 0.3796 S22: 0.0701 S23: -0.0784 REMARK 3 S31: -0.2988 S32: -0.0784 S33: -0.197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -38.43 7.7342 -46.3309 REMARK 3 T TENSOR REMARK 3 T11: 0.181 T22: -0.2261 REMARK 3 T33: -0.1795 T12: 0.034 REMARK 3 T13: -0.0414 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.5255 L22: 2.6286 REMARK 3 L33: 0.8542 L12: 0.2584 REMARK 3 L13: -0.3072 L23: -0.1714 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: -0.016 S13: 0.098 REMARK 3 S21: -0.016 S22: 0.0221 S23: 0.0052 REMARK 3 S31: 0.098 S32: 0.0052 S33: 0.0176 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1292139836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUN 30, 2023 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.15, STARANISO 2.4.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 76.008 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 11.89 REMARK 200 R MERGE (I) : 0.31460 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 76.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.65 REMARK 200 R MERGE FOR SHELL (I) : 0.18060 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5% MPD/PEG1000/PEG3350 + 0.1M REMARK 280 CARBOXYLIC ACIDS (SODIUM FORMATE, AMMONIUM ACETATE, SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE, POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, SODIUM OXAMATE) + 0.1M MES/IMIDAZOLE PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.29500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.83550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.54150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.83550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.29500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.54150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 GLN A -6 REMARK 465 ASP A -5 REMARK 465 PRO A -4 REMARK 465 ASN A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 341 REMARK 465 SER A 342 REMARK 465 GLN A 343 REMARK 465 MET B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 SER B -7 REMARK 465 GLN B -6 REMARK 465 ASP B -5 REMARK 465 PRO B -4 REMARK 465 ASN B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PHE B 334 REMARK 465 PRO B 335 REMARK 465 SER B 336 REMARK 465 LYS B 337 REMARK 465 PRO B 338 REMARK 465 SER B 339 REMARK 465 PHE B 340 REMARK 465 GLU B 341 REMARK 465 SER B 342 REMARK 465 GLN B 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 330 HG1 THR A 333 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD1 HIS A 181 OD2 ASP B 23 1655 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 21 -163.20 -118.67 REMARK 500 SER A 136 -117.83 48.00 REMARK 500 VAL A 170 -62.05 -102.05 REMARK 500 ALA A 194 -50.07 72.70 REMARK 500 GLN A 262 45.41 -140.91 REMARK 500 VAL A 289 -65.11 -95.72 REMARK 500 VAL B 21 -163.59 -117.89 REMARK 500 SER B 136 -117.60 47.65 REMARK 500 VAL B 170 -61.75 -102.04 REMARK 500 ALA B 194 -54.35 72.23 REMARK 500 VAL B 289 -65.21 -95.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 64 OG1 REMARK 620 2 HOH A 538 O 86.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 64 OG1 REMARK 620 2 HOH B 561 O 86.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8RPA RELATED DB: PDB REMARK 900 ZMADK3 COMPLEX WITH AP5A REMARK 900 RELATED ID: 8RGJ RELATED DB: PDB REMARK 900 ZMADK2 COMPLEX WITH AMP-PCP REMARK 900 RELATED ID: 8RF7 RELATED DB: PDB REMARK 900 ZMADK2 APOENZYME DBREF 9FW6 A 1 343 UNP O49923 ADK_PHYPA 1 343 DBREF 9FW6 B 1 343 UNP O49923 ADK_PHYPA 1 343 SEQADV 9FW6 MET A -17 UNP O49923 INITIATING METHIONINE SEQADV 9FW6 GLY A -16 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER A -15 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER A -14 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS A -13 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS A -12 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS A -11 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS A -10 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS A -9 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS A -8 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER A -7 UNP O49923 EXPRESSION TAG SEQADV 9FW6 GLN A -6 UNP O49923 EXPRESSION TAG SEQADV 9FW6 ASP A -5 UNP O49923 EXPRESSION TAG SEQADV 9FW6 PRO A -4 UNP O49923 EXPRESSION TAG SEQADV 9FW6 ASN A -3 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER A -2 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER A -1 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER A 0 UNP O49923 EXPRESSION TAG SEQADV 9FW6 MET B -17 UNP O49923 INITIATING METHIONINE SEQADV 9FW6 GLY B -16 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER B -15 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER B -14 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS B -13 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS B -12 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS B -11 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS B -10 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS B -9 UNP O49923 EXPRESSION TAG SEQADV 9FW6 HIS B -8 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER B -7 UNP O49923 EXPRESSION TAG SEQADV 9FW6 GLN B -6 UNP O49923 EXPRESSION TAG SEQADV 9FW6 ASP B -5 UNP O49923 EXPRESSION TAG SEQADV 9FW6 PRO B -4 UNP O49923 EXPRESSION TAG SEQADV 9FW6 ASN B -3 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER B -2 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER B -1 UNP O49923 EXPRESSION TAG SEQADV 9FW6 SER B 0 UNP O49923 EXPRESSION TAG SEQRES 1 A 361 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 361 PRO ASN SER SER SER MET ALA SER GLU GLY VAL LEU LEU SEQRES 3 A 361 GLY MET GLY ASN PRO LEU LEU ASP ILE SER CYS VAL VAL SEQRES 4 A 361 ASP ASP ALA PHE LEU GLU LYS TYR GLY LEU THR LEU ASN SEQRES 5 A 361 ASN ALA ILE LEU ALA GLU ASP LYS HIS LEU PRO MET TYR SEQRES 6 A 361 LYS GLU LEU ALA ALA ASN PRO ASP VAL GLU TYR ILE ALA SEQRES 7 A 361 GLY GLY ALA THR GLN ASN THR ILE ARG ILE ALA GLN TRP SEQRES 8 A 361 MET LEU GLY GLU SER ASN ALA THR SER TYR PHE GLY CYS SEQRES 9 A 361 VAL GLY LYS ASP GLU TYR GLY ASP ARG MET PHE LYS LEU SEQRES 10 A 361 ALA SER GLU GLY GLY VAL ASN ILE ARG TYR ASP VAL ASP SEQRES 11 A 361 GLU ASP LEU PRO THR GLY THR CYS GLY VAL LEU VAL VAL SEQRES 12 A 361 LYS GLY GLU ARG SER LEU VAL ALA ASN LEU SER ALA ALA SEQRES 13 A 361 ASN LYS TYR LYS ILE ASP HIS LEU LYS LYS PRO GLU ASN SEQRES 14 A 361 TRP ALA PHE VAL GLU LYS ALA LYS TYR ILE TYR SER ALA SEQRES 15 A 361 GLY PHE PHE LEU THR VAL SER PRO GLU SER MET MET THR SEQRES 16 A 361 VAL ALA LYS HIS ALA ALA GLU THR GLY LYS TYR TYR MET SEQRES 17 A 361 ILE ASN LEU ALA ALA PRO PHE ILE CYS GLN PHE PHE LYS SEQRES 18 A 361 ASP PRO LEU MET GLU LEU PHE PRO TYR VAL ASP PHE ILE SEQRES 19 A 361 PHE GLY ASN GLU SER GLU ALA ARG ALA PHE ALA GLN VAL SEQRES 20 A 361 GLN GLY TRP GLU THR GLU ASP THR LYS VAL ILE ALA VAL SEQRES 21 A 361 LYS LEU ALA ALA LEU PRO LYS ALA GLY GLY THR HIS LYS SEQRES 22 A 361 ARG VAL ALA VAL ILE THR GLN GLY THR ASP PRO THR ILE SEQRES 23 A 361 VAL ALA GLU ASP GLY LYS VAL THR GLU PHE PRO VAL THR SEQRES 24 A 361 PRO ILE PRO LYS GLU LYS LEU VAL ASP THR ASN ALA ALA SEQRES 25 A 361 GLY ASP SER PHE VAL GLY GLY PHE LEU SER GLN LEU VAL SEQRES 26 A 361 LEU GLY LYS ASP ILE ALA GLN CYS VAL ARG ALA GLY ASN SEQRES 27 A 361 TYR ALA ALA SER VAL ILE ILE GLN ARG SER GLY CYS THR SEQRES 28 A 361 PHE PRO SER LYS PRO SER PHE GLU SER GLN SEQRES 1 B 361 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 361 PRO ASN SER SER SER MET ALA SER GLU GLY VAL LEU LEU SEQRES 3 B 361 GLY MET GLY ASN PRO LEU LEU ASP ILE SER CYS VAL VAL SEQRES 4 B 361 ASP ASP ALA PHE LEU GLU LYS TYR GLY LEU THR LEU ASN SEQRES 5 B 361 ASN ALA ILE LEU ALA GLU ASP LYS HIS LEU PRO MET TYR SEQRES 6 B 361 LYS GLU LEU ALA ALA ASN PRO ASP VAL GLU TYR ILE ALA SEQRES 7 B 361 GLY GLY ALA THR GLN ASN THR ILE ARG ILE ALA GLN TRP SEQRES 8 B 361 MET LEU GLY GLU SER ASN ALA THR SER TYR PHE GLY CYS SEQRES 9 B 361 VAL GLY LYS ASP GLU TYR GLY ASP ARG MET PHE LYS LEU SEQRES 10 B 361 ALA SER GLU GLY GLY VAL ASN ILE ARG TYR ASP VAL ASP SEQRES 11 B 361 GLU ASP LEU PRO THR GLY THR CYS GLY VAL LEU VAL VAL SEQRES 12 B 361 LYS GLY GLU ARG SER LEU VAL ALA ASN LEU SER ALA ALA SEQRES 13 B 361 ASN LYS TYR LYS ILE ASP HIS LEU LYS LYS PRO GLU ASN SEQRES 14 B 361 TRP ALA PHE VAL GLU LYS ALA LYS TYR ILE TYR SER ALA SEQRES 15 B 361 GLY PHE PHE LEU THR VAL SER PRO GLU SER MET MET THR SEQRES 16 B 361 VAL ALA LYS HIS ALA ALA GLU THR GLY LYS TYR TYR MET SEQRES 17 B 361 ILE ASN LEU ALA ALA PRO PHE ILE CYS GLN PHE PHE LYS SEQRES 18 B 361 ASP PRO LEU MET GLU LEU PHE PRO TYR VAL ASP PHE ILE SEQRES 19 B 361 PHE GLY ASN GLU SER GLU ALA ARG ALA PHE ALA GLN VAL SEQRES 20 B 361 GLN GLY TRP GLU THR GLU ASP THR LYS VAL ILE ALA VAL SEQRES 21 B 361 LYS LEU ALA ALA LEU PRO LYS ALA GLY GLY THR HIS LYS SEQRES 22 B 361 ARG VAL ALA VAL ILE THR GLN GLY THR ASP PRO THR ILE SEQRES 23 B 361 VAL ALA GLU ASP GLY LYS VAL THR GLU PHE PRO VAL THR SEQRES 24 B 361 PRO ILE PRO LYS GLU LYS LEU VAL ASP THR ASN ALA ALA SEQRES 25 B 361 GLY ASP SER PHE VAL GLY GLY PHE LEU SER GLN LEU VAL SEQRES 26 B 361 LEU GLY LYS ASP ILE ALA GLN CYS VAL ARG ALA GLY ASN SEQRES 27 B 361 TYR ALA ALA SER VAL ILE ILE GLN ARG SER GLY CYS THR SEQRES 28 B 361 PHE PRO SER LYS PRO SER PHE GLU SER GLN HET ADP A 401 39 HET ADN A 402 32 HET NA A 403 1 HET ADP B 401 39 HET ADN B 402 32 HET EDO B 403 10 HET EDO B 404 10 HET NA B 405 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ADN ADENOSINE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 ADN 2(C10 H13 N5 O4) FORMUL 5 NA 2(NA 1+) FORMUL 8 EDO 2(C2 H6 O2) FORMUL 11 HOH *320(H2 O) HELIX 1 AA1 ASP A 22 TYR A 29 1 8 HELIX 2 AA2 GLU A 40 LYS A 42 5 3 HELIX 3 AA3 HIS A 43 ASN A 53 1 11 HELIX 4 AA4 GLY A 62 GLY A 76 1 15 HELIX 5 AA5 ASP A 90 GLY A 103 1 14 HELIX 6 AA6 LEU A 135 TYR A 141 5 7 HELIX 7 AA7 LYS A 142 LYS A 148 1 7 HELIX 8 AA8 LYS A 148 ALA A 158 1 11 HELIX 9 AA9 ALA A 164 VAL A 170 5 7 HELIX 10 AB1 SER A 171 GLY A 186 1 16 HELIX 11 AB2 ALA A 195 PHE A 202 1 8 HELIX 12 AB3 PHE A 202 PHE A 210 1 9 HELIX 13 AB4 PRO A 211 VAL A 213 5 3 HELIX 14 AB5 GLU A 220 GLY A 231 1 12 HELIX 15 AB6 ASP A 236 ALA A 246 1 11 HELIX 16 AB7 ALA A 293 VAL A 307 1 15 HELIX 17 AB8 ASP A 311 ILE A 327 1 17 HELIX 18 AB9 ASP B 22 GLY B 30 1 9 HELIX 19 AC1 GLU B 40 LYS B 42 5 3 HELIX 20 AC2 HIS B 43 ASN B 53 1 11 HELIX 21 AC3 GLY B 62 GLY B 76 1 15 HELIX 22 AC4 ASP B 90 GLY B 103 1 14 HELIX 23 AC5 LEU B 135 TYR B 141 5 7 HELIX 24 AC6 LYS B 142 LYS B 148 1 7 HELIX 25 AC7 LYS B 148 ALA B 158 1 11 HELIX 26 AC8 ALA B 164 VAL B 170 5 7 HELIX 27 AC9 SER B 171 GLY B 186 1 16 HELIX 28 AD1 ALA B 195 PHE B 202 1 8 HELIX 29 AD2 PHE B 202 PHE B 210 1 9 HELIX 30 AD3 PRO B 211 VAL B 213 5 3 HELIX 31 AD4 GLU B 220 GLN B 230 1 11 HELIX 32 AD5 ASP B 236 ALA B 246 1 11 HELIX 33 AD6 PRO B 284 LEU B 288 5 5 HELIX 34 AD7 ALA B 293 LEU B 308 1 16 HELIX 35 AD8 ASP B 311 GLN B 328 1 18 SHEET 1 AA1 9 ASN A 106 ASP A 112 0 SHEET 2 AA1 9 THR A 81 GLY A 88 1 N TYR A 83 O ARG A 108 SHEET 3 AA1 9 LEU A 7 MET A 10 1 N GLY A 9 O PHE A 84 SHEET 4 AA1 9 TYR A 160 SER A 163 1 O TYR A 160 N LEU A 8 SHEET 5 AA1 9 TYR A 188 ASN A 192 1 O TYR A 188 N ILE A 161 SHEET 6 AA1 9 PHE A 215 ASN A 219 1 O PHE A 217 N ILE A 191 SHEET 7 AA1 9 VAL A 257 GLN A 262 1 O VAL A 259 N ILE A 216 SHEET 8 AA1 9 ASP A 265 GLU A 271 -1 O ILE A 268 N ILE A 260 SHEET 9 AA1 9 LYS A 274 PHE A 278 -1 O THR A 276 N VAL A 269 SHEET 1 AA2 5 ALA A 36 LEU A 38 0 SHEET 2 AA2 5 GLU A 128 ASN A 134 1 O ALA A 133 N ILE A 37 SHEET 3 AA2 5 THR A 119 VAL A 125 -1 N THR A 119 O ASN A 134 SHEET 4 AA2 5 LEU A 15 VAL A 20 1 N ILE A 17 O CYS A 120 SHEET 5 AA2 5 GLU A 57 ALA A 60 -1 O ILE A 59 N ASP A 16 SHEET 1 AA3 9 ASN B 106 ASP B 112 0 SHEET 2 AA3 9 THR B 81 GLY B 88 1 N TYR B 83 O ARG B 108 SHEET 3 AA3 9 LEU B 7 MET B 10 1 N GLY B 9 O PHE B 84 SHEET 4 AA3 9 TYR B 160 SER B 163 1 O TYR B 162 N LEU B 8 SHEET 5 AA3 9 TYR B 188 ASN B 192 1 O TYR B 188 N ILE B 161 SHEET 6 AA3 9 PHE B 215 ASN B 219 1 O PHE B 217 N ILE B 191 SHEET 7 AA3 9 VAL B 257 GLN B 262 1 O VAL B 259 N ILE B 216 SHEET 8 AA3 9 ASP B 265 GLU B 271 -1 O ILE B 268 N ILE B 260 SHEET 9 AA3 9 LYS B 274 PHE B 278 -1 O THR B 276 N VAL B 269 SHEET 1 AA4 5 ALA B 36 LEU B 38 0 SHEET 2 AA4 5 GLU B 128 ASN B 134 1 O ALA B 133 N ILE B 37 SHEET 3 AA4 5 THR B 119 VAL B 125 -1 N THR B 119 O ASN B 134 SHEET 4 AA4 5 LEU B 15 VAL B 20 1 N ILE B 17 O CYS B 120 SHEET 5 AA4 5 GLU B 57 ALA B 60 -1 O ILE B 59 N ASP B 16 LINK OG1 THR A 64 NA NA A 403 1555 1555 3.16 LINK NA NA A 403 O HOH A 538 1555 1555 3.12 LINK OG1 THR B 64 NA NA B 405 1555 1555 3.08 LINK NA NA B 405 O HOH B 561 1555 1555 3.16 CRYST1 50.590 93.083 131.671 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007595 0.00000 CONECT 90810255 CONECT 605810347 CONECT1018410185101861018710191 CONECT1018510184 CONECT1018610184 CONECT1018710184 CONECT1018810189101901019110192 CONECT1018910188 CONECT1019010188 CONECT101911018410188 CONECT101921018810193 CONECT1019310192101941021110212 CONECT1019410193101951019610213 CONECT101951019410200 CONECT1019610194101971019810214 CONECT101971019610215 CONECT1019810196101991020010216 CONECT101991019810217 CONECT1020010195101981020110218 CONECT10201102001020210210 CONECT10202102011020310219 CONECT102031020210204 CONECT10204102031020510210 CONECT10205102041020610207 CONECT10206102051022010221 CONECT102071020510208 CONECT10208102071020910222 CONECT102091020810210 CONECT10210102011020410209 CONECT1021110193 CONECT1021210193 CONECT1021310194 CONECT1021410196 CONECT1021510197 CONECT1021610198 CONECT1021710199 CONECT1021810200 CONECT1021910202 CONECT1022010206 CONECT1022110206 CONECT1022210208 CONECT102231022410242 CONECT1022410223102251024310244 CONECT1022510224102261022710245 CONECT102261022510231 CONECT1022710225102281022910246 CONECT102281022710247 CONECT1022910227102301023110248 CONECT102301022910249 CONECT1023110226102291023210250 CONECT10232102311023310241 CONECT10233102321023410251 CONECT102341023310235 CONECT10235102341023610241 CONECT10236102351023710238 CONECT10237102361025210253 CONECT102381023610239 CONECT10239102381024010254 CONECT102401023910241 CONECT10241102321023510240 CONECT1024210223 CONECT1024310224 CONECT1024410224 CONECT1024510225 CONECT1024610227 CONECT1024710228 CONECT1024810229 CONECT1024910230 CONECT1025010231 CONECT1025110233 CONECT1025210237 CONECT1025310237 CONECT1025410239 CONECT10255 90810385 CONECT1025610257102581025910263 CONECT1025710256 CONECT1025810256 CONECT1025910256 CONECT1026010261102621026310264 CONECT1026110260 CONECT1026210260 CONECT102631025610260 CONECT102641026010265 CONECT1026510264102661028310284 CONECT1026610265102671026810285 CONECT102671026610272 CONECT1026810266102691027010286 CONECT102691026810287 CONECT1027010268102711027210288 CONECT102711027010289 CONECT1027210267102701027310290 CONECT10273102721027410282 CONECT10274102731027510291 CONECT102751027410276 CONECT10276102751027710282 CONECT10277102761027810279 CONECT10278102771029210293 CONECT102791027710280 CONECT10280102791028110294 CONECT102811028010282 CONECT10282102731027610281 CONECT1028310265 CONECT1028410265 CONECT1028510266 CONECT1028610268 CONECT1028710269 CONECT1028810270 CONECT1028910271 CONECT1029010272 CONECT1029110274 CONECT1029210278 CONECT1029310278 CONECT1029410280 CONECT102951029610314 CONECT1029610295102971031510316 CONECT1029710296102981029910317 CONECT102981029710303 CONECT1029910297103001030110318 CONECT103001029910319 CONECT1030110299103021030310320 CONECT103021030110321 CONECT1030310298103011030410322 CONECT10304103031030510313 CONECT10305103041030610323 CONECT103061030510307 CONECT10307103061030810313 CONECT10308103071030910310 CONECT10309103081032410325 CONECT103101030810311 CONECT10311103101031210326 CONECT103121031110313 CONECT10313103041030710312 CONECT1031410295 CONECT1031510296 CONECT1031610296 CONECT1031710297 CONECT1031810299 CONECT1031910300 CONECT1032010301 CONECT1032110302 CONECT1032210303 CONECT1032310305 CONECT1032410309 CONECT1032510309 CONECT1032610311 CONECT1032710328103291033110332 CONECT103281032710333 CONECT1032910327103301033410335 CONECT103301032910336 CONECT1033110327 CONECT1033210327 CONECT1033310328 CONECT1033410329 CONECT1033510329 CONECT1033610330 CONECT1033710338103391034110342 CONECT103381033710343 CONECT1033910337103401034410345 CONECT103401033910346 CONECT1034110337 CONECT1034210337 CONECT1034310338 CONECT1034410339 CONECT1034510339 CONECT1034610340 CONECT10347 605810554 CONECT1038510255 CONECT1055410347 MASTER 395 0 8 35 28 0 0 6 5534 2 168 56 END