HEADER VIRUS 01-JUL-24 9FX1 TITLE CRYOEM STRUCTURE OF RV-A89 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P1D,VIRION PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAPSID PROTEIN VP2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: P1B,VIRION PROTEIN 2; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CAPSID PROTEIN VP3; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: CAPSID PROTEIN VP4; COMPND 17 CHAIN: D; COMPND 18 SYNONYM: P1A,VIRION PROTEIN 4; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 3 ORGANISM_TAXID: 650130; SOURCE 4 EXPRESSION_SYSTEM: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 650130; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 8 ORGANISM_TAXID: 650130; SOURCE 9 EXPRESSION_SYSTEM: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 650130; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 13 ORGANISM_TAXID: 650130; SOURCE 14 EXPRESSION_SYSTEM: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 650130; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 18 ORGANISM_TAXID: 650130; SOURCE 19 EXPRESSION_SYSTEM: HUMAN RHINOVIRUS 89 ATCC VR-1199; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 650130 KEYWDS RV-A89, RHINOVIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR J.WALD,N.GOESSWEINER-MOHR,D.BLAAS,T.C.MARLOVITS REVDAT 1 18-DEC-24 9FX1 0 JRNL AUTH J.WALD,N.GOESSWEINER-MOHR,A.REAL-HOHN,D.BLAAS,T.C.MARLOVITS JRNL TITL DMSO MIGHT IMPACT LIGAND BINDING, CAPSID STABILITY, AND RNA JRNL TITL 2 INTERACTION IN VIRAL PREPARATIONS. JRNL REF SCI REP V. 14 30408 2024 JRNL REFN ESSN 2045-2322 JRNL PMID 39639094 JRNL DOI 10.1038/S41598-024-81789-X REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 RELION, RELION, RELION, CRYOSPARC, REMARK 3 ROSETTA, ISOLDE REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 1.760 REMARK 3 NUMBER OF PARTICLES : 97123 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9FX1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292138832. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN RHINOVIRUS 89 ATCC VR REMARK 245 -1199 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4860 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 240-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.17.1_B42449. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.308796 0.500056 -0.809067 206.55395 REMARK 350 BIOMT2 2 0.500056 -0.808942 -0.309123 334.14230 REMARK 350 BIOMT3 2 -0.809067 -0.309123 -0.499854 540.65570 REMARK 350 BIOMT1 3 0.809140 0.308905 0.499870 -127.60925 REMARK 350 BIOMT2 3 -0.308930 -0.500000 0.809050 206.48359 REMARK 350 BIOMT3 3 0.499855 -0.809060 -0.309140 334.21366 REMARK 350 BIOMT1 4 -0.500000 0.808925 0.309257 78.83978 REMARK 350 BIOMT2 4 -0.809057 -0.308933 -0.499988 540.64005 REMARK 350 BIOMT3 4 -0.308913 -0.500200 0.808933 206.54790 REMARK 350 BIOMT1 5 -0.308819 0.499906 0.809151 -0.05901 REMARK 350 BIOMT2 5 -0.500019 -0.809017 0.308987 413.03066 REMARK 350 BIOMT3 5 0.809081 -0.309170 0.499802 0.06526 REMARK 350 BIOMT1 6 -0.309216 0.500118 -0.808868 334.12306 REMARK 350 BIOMT2 6 -0.499959 -0.809017 -0.309084 540.65863 REMARK 350 BIOMT3 6 -0.808966 0.308827 0.500199 206.49575 REMARK 350 BIOMT1 7 1.000000 0.000045 -0.000246 0.04143 REMARK 350 BIOMT2 7 0.000045 -1.000000 0.000000 413.01491 REMARK 350 BIOMT3 7 -0.000246 0.000000 -1.000000 413.07913 REMARK 350 BIOMT1 8 0.499963 0.809071 0.308935 -127.62191 REMARK 350 BIOMT2 8 0.809000 -0.308980 -0.500050 206.52457 REMARK 350 BIOMT3 8 -0.309121 0.499935 -0.809017 334.18023 REMARK 350 BIOMT1 9 0.000100 1.000000 0.000061 -0.03952 REMARK 350 BIOMT2 9 0.000039 -0.000061 1.000000 0.00238 REMARK 350 BIOMT3 9 1.000000 -0.000100 -0.000039 0.03716 REMARK 350 BIOMT1 10 0.499924 0.809109 -0.308899 -0.03010 REMARK 350 BIOMT2 10 -0.809048 0.309017 -0.499950 413.01613 REMARK 350 BIOMT3 10 -0.309058 0.499851 0.809093 0.02204 REMARK 350 BIOMT1 11 -0.500000 0.809100 -0.308800 206.44125 REMARK 350 BIOMT2 11 -0.808986 -0.309101 0.499999 334.14854 REMARK 350 BIOMT3 11 0.309099 0.499814 0.809101 -127.62490 REMARK 350 BIOMT1 12 0.808894 0.309188 -0.500093 78.88960 REMARK 350 BIOMT2 12 -0.309044 -0.500000 -0.809006 540.65905 REMARK 350 BIOMT3 12 -0.500181 0.808952 -0.308895 206.53736 REMARK 350 BIOMT1 13 0.309192 0.499996 0.808952 -127.65963 REMARK 350 BIOMT2 13 0.499996 -0.809046 0.308948 206.53563 REMARK 350 BIOMT3 13 0.808952 0.308948 -0.500147 78.94670 REMARK 350 BIOMT1 14 0.000100 0.000039 1.000000 -0.03697 REMARK 350 BIOMT2 14 1.000000 -0.000061 -0.000100 0.03945 REMARK 350 BIOMT3 14 0.000061 1.000000 -0.000039 -0.00266 REMARK 350 BIOMT1 15 -0.809017 0.309128 -0.499932 412.97674 REMARK 350 BIOMT2 15 -0.308990 0.499864 0.809111 -0.00077 REMARK 350 BIOMT3 15 0.500017 0.809058 -0.308881 -0.03432 REMARK 350 BIOMT1 16 0.809031 -0.308869 -0.500069 206.49268 REMARK 350 BIOMT2 16 -0.309151 0.499986 -0.808974 334.16516 REMARK 350 BIOMT3 16 0.499894 0.809082 0.309017 -127.61846 REMARK 350 BIOMT1 17 -0.000100 0.000207 -1.000000 412.99786 REMARK 350 BIOMT2 17 -1.000000 -0.000108 0.000100 413.01960 REMARK 350 BIOMT3 17 -0.000108 1.000000 0.000207 -0.01847 REMARK 350 BIOMT1 18 0.809140 -0.308930 0.499855 -0.01568 REMARK 350 BIOMT2 18 0.308905 -0.500000 -0.809060 413.05975 REMARK 350 BIOMT3 18 0.499870 0.809050 -0.309140 0.05123 REMARK 350 BIOMT1 19 -0.808908 0.309068 0.500144 206.43682 REMARK 350 BIOMT2 19 0.309067 -0.500122 0.808923 78.91527 REMARK 350 BIOMT3 19 0.500145 0.808922 0.309030 -127.64003 REMARK 350 BIOMT1 20 -0.500000 -0.808986 0.309099 412.99074 REMARK 350 BIOMT2 20 0.809100 -0.309101 0.499814 0.04265 REMARK 350 BIOMT3 20 -0.308800 0.499999 0.809101 -0.06349 REMARK 350 BIOMT1 21 -0.500039 -0.808948 -0.309134 540.66491 REMARK 350 BIOMT2 21 -0.808948 0.308896 0.500186 206.47841 REMARK 350 BIOMT3 21 -0.309135 0.500186 -0.808857 334.09828 REMARK 350 BIOMT1 22 0.000146 -1.000000 -0.000061 413.00031 REMARK 350 BIOMT2 22 -0.000207 0.000061 -1.000000 413.05636 REMARK 350 BIOMT3 22 1.000000 0.000146 -0.000207 0.02111 REMARK 350 BIOMT1 23 0.500037 -0.808911 -0.309235 334.15654 REMARK 350 BIOMT2 23 -0.809086 -0.309054 -0.499865 540.64567 REMARK 350 BIOMT3 23 0.308776 0.500148 -0.809017 206.53689 REMARK 350 BIOMT1 24 -0.308818 -0.500018 0.809081 206.45163 REMARK 350 BIOMT2 24 0.499905 -0.809017 -0.309170 334.19858 REMARK 350 BIOMT3 24 0.809151 0.308987 0.499801 -127.60589 REMARK 350 BIOMT1 25 -0.809125 -0.308883 -0.499907 540.62105 REMARK 350 BIOMT2 25 -0.308882 -0.500150 0.808976 206.52018 REMARK 350 BIOMT3 25 -0.499908 0.808975 0.309276 78.81489 REMARK 350 BIOMT1 26 -0.309216 -0.499958 -0.808967 540.67117 REMARK 350 BIOMT2 26 0.500118 -0.809017 0.308827 206.52969 REMARK 350 BIOMT3 26 -0.808868 -0.309085 0.500199 334.08182 REMARK 350 BIOMT1 27 0.500037 -0.809086 0.308777 206.56442 REMARK 350 BIOMT2 27 -0.808911 -0.309054 0.500148 334.09267 REMARK 350 BIOMT3 27 -0.309234 -0.499866 -0.809017 540.67470 REMARK 350 BIOMT1 28 -0.808880 -0.309165 0.500130 334.10669 REMARK 350 BIOMT2 28 -0.309165 -0.499878 -0.809035 540.66480 REMARK 350 BIOMT3 28 0.500130 -0.809035 0.308759 206.54711 REMARK 350 BIOMT1 29 0.309239 -0.500080 0.808883 78.87299 REMARK 350 BIOMT2 29 -0.500080 -0.808988 -0.308963 540.65246 REMARK 350 BIOMT3 29 0.808883 -0.308963 -0.500251 206.58877 REMARK 350 BIOMT1 30 -1.000000 0.000000 0.000246 412.96087 REMARK 350 BIOMT2 30 0.000000 -1.000000 -0.000168 413.05896 REMARK 350 BIOMT3 30 0.000246 -0.000168 1.000000 -0.01620 REMARK 350 BIOMT1 31 0.308842 -0.499868 -0.809165 413.06125 REMARK 350 BIOMT2 31 -0.499868 -0.809092 0.309034 413.00524 REMARK 350 BIOMT3 31 -0.809165 0.309034 -0.499750 412.99771 REMARK 350 BIOMT1 32 0.500076 0.808934 0.309112 -127.65329 REMARK 350 BIOMT2 32 -0.808977 0.309017 0.500064 206.48447 REMARK 350 BIOMT3 32 0.308998 -0.500135 0.808941 78.93036 REMARK 350 BIOMT1 33 -0.000146 1.000000 0.000107 0.00187 REMARK 350 BIOMT2 33 -0.000039 0.000107 -1.000000 413.01226 REMARK 350 BIOMT3 33 -1.000000 -0.000146 0.000039 413.04224 REMARK 350 BIOMT1 34 0.499963 0.809000 -0.309121 0.03014 REMARK 350 BIOMT2 34 0.809071 -0.308980 0.499936 -0.00142 REMARK 350 BIOMT3 34 0.308936 -0.500050 -0.809017 413.05724 REMARK 350 BIOMT1 35 -0.500113 0.808963 -0.308976 206.52929 REMARK 350 BIOMT2 35 0.808963 0.309138 -0.500013 78.87547 REMARK 350 BIOMT3 35 -0.308975 -0.500013 -0.809025 540.65335 REMARK 350 BIOMT1 36 0.809002 0.308967 -0.500054 78.90502 REMARK 350 BIOMT2 36 0.309082 0.500015 0.808983 -127.64059 REMARK 350 BIOMT3 36 0.499984 -0.809027 0.309017 206.52224 REMARK 350 BIOMT1 37 0.309017 0.499882 0.809090 -127.62830 REMARK 350 BIOMT2 37 -0.499982 0.809069 -0.308911 206.47294 REMARK 350 BIOMT3 37 -0.809028 -0.309071 0.499948 334.16361 REMARK 350 BIOMT1 38 0.000145 -0.000207 1.000000 0.00425 REMARK 350 BIOMT2 38 -1.000000 0.000061 0.000145 412.97514 REMARK 350 BIOMT3 38 -0.000061 -1.000000 -0.000207 413.08177 REMARK 350 BIOMT1 39 -0.809154 0.308952 -0.499818 413.01788 REMARK 350 BIOMT2 39 0.308952 -0.499850 -0.809135 413.03440 REMARK 350 BIOMT3 39 -0.499818 -0.809135 0.309004 413.01184 REMARK 350 BIOMT1 40 0.808894 -0.309045 -0.500181 206.58045 REMARK 350 BIOMT2 40 0.309188 -0.500000 0.808952 78.85916 REMARK 350 BIOMT3 40 -0.500093 -0.809006 -0.308895 540.64691 REMARK 350 BIOMT1 41 -0.000146 -0.000039 -1.000000 413.05819 REMARK 350 BIOMT2 41 1.000000 0.000107 -0.000146 0.01450 REMARK 350 BIOMT3 41 0.000107 -1.000000 0.000039 412.99630 REMARK 350 BIOMT1 42 0.809031 -0.309152 0.499894 0.04456 REMARK 350 BIOMT2 42 -0.308868 0.499986 0.809082 -0.04496 REMARK 350 BIOMT3 42 -0.500069 -0.808974 0.309017 413.02795 REMARK 350 BIOMT1 43 -0.809017 0.308846 0.500106 206.51305 REMARK 350 BIOMT2 43 -0.309105 0.500136 -0.808899 334.10898 REMARK 350 BIOMT3 43 -0.499946 -0.808998 -0.309153 540.66831 REMARK 350 BIOMT1 44 -0.499887 -0.809123 0.308921 413.03238 REMARK 350 BIOMT2 44 -0.809123 0.309064 -0.499800 412.99106 REMARK 350 BIOMT3 44 0.308923 -0.499799 -0.809177 413.04103 REMARK 350 BIOMT1 45 -0.500000 -0.809057 -0.308913 540.63362 REMARK 350 BIOMT2 45 0.808925 -0.308933 -0.500200 206.56125 REMARK 350 BIOMT3 45 0.309257 -0.499988 0.808933 78.84806 REMARK 350 BIOMT1 46 -0.000101 -1.000000 -0.000107 413.06082 REMARK 350 BIOMT2 46 0.000207 -0.000107 1.000000 -0.02263 REMARK 350 BIOMT3 46 -1.000000 0.000100 0.000207 412.95660 REMARK 350 BIOMT1 47 0.499924 -0.809048 -0.309058 334.17168 REMARK 350 BIOMT2 47 0.809109 0.309017 0.499851 -127.61557 REMARK 350 BIOMT3 47 -0.308899 -0.499949 0.809093 206.46009 REMARK 350 BIOMT1 48 -0.308994 -0.500132 0.808945 206.53941 REMARK 350 BIOMT2 48 -0.499919 0.808994 0.309207 78.82563 REMARK 350 BIOMT3 48 -0.809076 -0.308864 -0.499999 540.63421 REMARK 350 BIOMT1 49 -0.809017 -0.309104 -0.499946 540.65221 REMARK 350 BIOMT2 49 0.308846 0.500136 -0.808998 206.51899 REMARK 350 BIOMT3 49 0.500106 -0.808900 -0.309153 334.13166 REMARK 350 BIOMT1 50 -0.308994 -0.499919 -0.809076 540.63981 REMARK 350 BIOMT2 50 -0.500132 0.808994 -0.308864 206.50993 REMARK 350 BIOMT3 50 0.808945 0.309207 -0.499999 78.86442 REMARK 350 BIOMT1 51 0.500076 -0.808977 0.308998 206.48829 REMARK 350 BIOMT2 51 0.808934 0.309017 -0.500135 78.93185 REMARK 350 BIOMT3 51 0.309112 0.500064 0.808941 -127.64628 REMARK 350 BIOMT1 52 -0.809017 -0.308989 0.500017 334.12175 REMARK 350 BIOMT2 52 0.309129 0.499864 0.809058 -127.63467 REMARK 350 BIOMT3 52 -0.499931 0.809112 -0.308881 206.44985 REMARK 350 BIOMT1 53 0.309017 -0.500041 0.808991 78.88837 REMARK 350 BIOMT2 53 0.500094 0.808965 0.309000 -127.63419 REMARK 350 BIOMT3 53 -0.808959 0.309086 0.500052 206.47122 REMARK 350 BIOMT1 54 -1.000000 -0.000046 -0.000001 413.02126 REMARK 350 BIOMT2 54 -0.000046 1.000000 0.000168 -0.02521 REMARK 350 BIOMT3 54 0.000001 0.000168 -1.000000 412.99374 REMARK 350 BIOMT1 55 0.309017 -0.499982 -0.809028 413.02029 REMARK 350 BIOMT2 55 0.499883 0.809069 -0.309072 0.02861 REMARK 350 BIOMT3 55 0.809090 -0.308911 0.499948 -0.01994 REMARK 350 BIOMT1 56 0.309018 0.500095 -0.808958 206.47757 REMARK 350 BIOMT2 56 -0.500041 0.808965 0.309086 78.88161 REMARK 350 BIOMT3 56 0.808991 0.308999 0.500052 -127.62730 REMARK 350 BIOMT1 57 0.809003 0.309081 0.499983 -127.64080 REMARK 350 BIOMT2 57 0.308967 0.500014 -0.809028 206.52539 REMARK 350 BIOMT3 57 -0.500054 0.808984 0.309016 78.89685 REMARK 350 BIOMT1 58 -0.499961 0.809034 0.309035 78.85523 REMARK 350 BIOMT2 58 0.809034 0.308970 0.500002 -127.62162 REMARK 350 BIOMT3 58 0.309035 0.500002 -0.809009 206.51201 REMARK 350 BIOMT1 59 -0.309040 0.499944 0.809043 0.00110 REMARK 350 BIOMT2 59 0.500004 0.809040 -0.308950 -0.01575 REMARK 350 BIOMT3 59 -0.809005 0.309047 -0.500000 413.01367 REMARK 350 BIOMT1 60 -0.309040 0.500004 -0.809005 334.13847 REMARK 350 BIOMT2 60 0.499944 0.809040 0.309047 -127.62838 REMARK 350 BIOMT3 60 0.809043 -0.308950 -0.500000 206.50125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 50 H1 HOH C 301 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 62 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 69 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 160 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 114 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 79.82 -105.57 REMARK 500 THR A 172 -35.80 -134.59 REMARK 500 ASN A 220 106.95 -166.38 REMARK 500 CYS A 255 80.93 59.10 REMARK 500 HIS A 268 16.84 53.66 REMARK 500 ASN B 30 -161.32 56.31 REMARK 500 TYR B 35 16.66 56.88 REMARK 500 ASP B 57 -128.26 55.57 REMARK 500 CYS B 112 86.01 -157.94 REMARK 500 HIS B 148 54.72 -119.63 REMARK 500 PHE B 176 15.03 57.39 REMARK 500 ASP B 177 14.07 -151.12 REMARK 500 PHE C 25 77.77 -116.83 REMARK 500 ASN C 57 40.54 14.82 REMARK 500 THR C 195 -124.86 56.47 REMARK 500 ARG C 222 -84.09 -115.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 103 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50840 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF RV-A89 DBREF 9FX1 A 4 288 UNP P07210 POLG_HRV8A 575 859 DBREF 9FX1 B 10 263 UNP P07210 POLG_HRV8A 79 332 DBREF 9FX1 C 21 234 UNP P07210 POLG_HRV8A 357 570 DBREF 9FX1 D 28 44 UNP P07210 POLG_HRV8A 29 45 SEQRES 1 A 285 ASN PRO VAL GLU ASN TYR ILE ASP SER VAL LEU ASN GLU SEQRES 2 A 285 VAL LEU VAL VAL PRO ASN ILE GLN PRO SER THR SER VAL SEQRES 3 A 285 SER SER HIS ALA ALA PRO ALA LEU ASP ALA ALA GLU THR SEQRES 4 A 285 GLY HIS THR SER SER VAL GLN PRO GLU ASP MET ILE GLU SEQRES 5 A 285 THR ARG TYR VAL ILE THR ASP GLN THR ARG ASP GLU THR SEQRES 6 A 285 SER ILE GLU SER PHE LEU GLY ARG SER GLY CYS ILE ALA SEQRES 7 A 285 MET ILE GLU PHE ASN THR SER SER ASP LYS THR GLU HIS SEQRES 8 A 285 ASP LYS ILE GLY LYS GLY PHE LYS THR TRP LYS VAL SER SEQRES 9 A 285 LEU GLN GLU MET ALA GLN ILE ARG ARG LYS TYR GLU LEU SEQRES 10 A 285 PHE THR TYR THR ARG PHE ASP SER GLU ILE THR ILE VAL SEQRES 11 A 285 THR ALA ALA ALA ALA GLN GLY ASN ASP SER GLY HIS ILE SEQRES 12 A 285 VAL LEU GLN PHE MET TYR VAL PRO PRO GLY ALA PRO VAL SEQRES 13 A 285 PRO GLU LYS ARG ASP ASP TYR THR TRP GLN SER GLY THR SEQRES 14 A 285 ASN ALA SER VAL PHE TRP GLN GLU GLY GLN PRO TYR PRO SEQRES 15 A 285 ARG PHE THR ILE PRO PHE MET SER ILE ALA SER ALA TYR SEQRES 16 A 285 TYR MET PHE TYR ASP GLY TYR ASP GLY ASP SER ALA ALA SEQRES 17 A 285 SER LYS TYR GLY SER VAL VAL THR ASN ASP MET GLY THR SEQRES 18 A 285 ILE CYS VAL ARG ILE VAL THR SER ASN GLN LYS HIS ASP SEQRES 19 A 285 SER ASN ILE VAL CYS ARG ILE TYR HIS LYS ALA LYS HIS SEQRES 20 A 285 ILE LYS ALA TRP CYS PRO ARG PRO PRO ARG ALA VAL ALA SEQRES 21 A 285 TYR GLN HIS THR HIS SER THR ASN TYR ILE PRO SER ASN SEQRES 22 A 285 GLY GLU ALA THR THR GLN ILE LYS THR ARG PRO ASP SEQRES 1 B 254 SER ASP ARG LEU ILE GLN ILE THR ARG GLY ASP SER THR SEQRES 2 B 254 ILE THR SER GLN ASP THR ALA ASN ALA VAL VAL ALA TYR SEQRES 3 B 254 GLY VAL TRP PRO SER TYR LEU THR PRO ASP ASP ALA THR SEQRES 4 B 254 ALA ILE ASP LYS PRO THR GLN PRO ASP THR SER SER ASN SEQRES 5 B 254 ARG PHE TYR THR LEU ASP SER ARG SER TRP THR SER ALA SEQRES 6 B 254 SER SER GLY TRP TRP TRP LYS LEU PRO ASP ALA LEU LYS SEQRES 7 B 254 ASN MET GLY ILE PHE GLY GLU ASN MET PHE TYR HIS PHE SEQRES 8 B 254 LEU GLY ARG SER GLY TYR THR ILE HIS VAL GLN CYS ASN SEQRES 9 B 254 SER SER LYS PHE HIS GLN GLY LEU LEU ILE VAL ALA ALA SEQRES 10 B 254 ILE PRO GLU HIS GLN LEU ALA SER ALA THR SER GLY ASN SEQRES 11 B 254 VAL SER VAL GLY TYR ASN HIS THR HIS PRO GLY GLU GLN SEQRES 12 B 254 GLY ARG GLU VAL VAL PRO SER ARG THR SER SER ASP ASN SEQRES 13 B 254 LYS ARG PRO SER ASP ASP SER TRP LEU ASN PHE ASP GLY SEQRES 14 B 254 THR LEU LEU GLY ASN LEU PRO ILE TYR PRO HIS GLN TYR SEQRES 15 B 254 ILE ASN LEU ARG THR ASN ASN SER ALA THR LEU ILE LEU SEQRES 16 B 254 PRO TYR VAL ASN ALA VAL PRO MET ASP SER MET LEU ARG SEQRES 17 B 254 HIS ASN ASN TRP SER LEU VAL ILE ILE PRO ILE CYS PRO SEQRES 18 B 254 LEU GLN VAL GLN PRO GLY GLY THR GLN SER ILE PRO ILE SEQRES 19 B 254 THR VAL SER ILE SER PRO MET PHE SER GLU PHE SER GLY SEQRES 20 B 254 PRO ARG SER LYS VAL VAL PHE SEQRES 1 C 214 SER PRO SER ALA PHE PRO TYR PHE HIS PRO THR LYS GLU SEQRES 2 C 214 ILE PHE ILE PRO GLY GLN VAL ARG ASN LEU ILE GLU MET SEQRES 3 C 214 CYS GLN VAL ASP THR LEU ILE PRO VAL ASN ASN THR GLN SEQRES 4 C 214 GLU ASN VAL ARG SER VAL ASN MET TYR THR VAL ASP LEU SEQRES 5 C 214 ARG THR GLN VAL ASP LEU ALA LYS GLU VAL PHE SER ILE SEQRES 6 C 214 PRO VAL ASP ILE ALA SER GLN PRO LEU ALA THR THR LEU SEQRES 7 C 214 ILE GLY GLU LEU ALA SER TYR TYR THR HIS TRP THR GLY SEQRES 8 C 214 SER LEU ARG PHE SER PHE MET PHE CYS GLY SER ALA SER SEQRES 9 C 214 SER THR LEU LYS LEU LEU ILE ALA TYR THR PRO PRO GLY SEQRES 10 C 214 VAL GLY LYS PRO LYS SER ARG ARG GLU ALA MET LEU GLY SEQRES 11 C 214 THR HIS LEU VAL TRP ASP VAL GLY LEU GLN SER THR ALA SEQRES 12 C 214 SER LEU VAL VAL PRO TRP VAL SER ALA SER HIS PHE ARG SEQRES 13 C 214 PHE THR THR PRO ASP THR TYR SER SER ALA GLY TYR ILE SEQRES 14 C 214 THR CYS TRP TYR GLN THR ASN PHE VAL VAL PRO ASP SER SEQRES 15 C 214 THR PRO ASP ASN ALA LYS MET VAL CYS MET VAL SER ALA SEQRES 16 C 214 CYS LYS ASP PHE CYS LEU ARG LEU ALA ARG ASP THR ASN SEQRES 17 C 214 LEU HIS THR GLN GLU GLY SEQRES 1 D 17 ASN ILE ASN TYR PHE LYS ASP ALA ALA SER SER GLY ALA SEQRES 2 D 17 SER ARG LEU ASP HET DAO A 301 37 HETNAM DAO LAURIC ACID FORMUL 5 DAO C12 H24 O2 FORMUL 6 HOH *204(H2 O) HELIX 1 AA1 ASN A 4 ASN A 15 1 12 HELIX 2 AA2 ALA A 39 GLY A 43 5 5 HELIX 3 AA3 GLN A 49 MET A 53 5 5 HELIX 4 AA4 ARG A 65 THR A 68 5 4 HELIX 5 AA5 SER A 69 GLY A 75 1 7 HELIX 6 AA6 THR A 92 LYS A 96 5 5 HELIX 7 AA7 MET A 111 GLU A 119 1 9 HELIX 8 AA8 ASP A 165 SER A 170 5 6 HELIX 9 AA9 GLY A 215 THR A 219 5 5 HELIX 10 AB1 TYR B 35 VAL B 37 5 3 HELIX 11 AB2 PRO B 56 SER B 60 5 5 HELIX 12 AB3 PRO B 83 LYS B 87 5 5 HELIX 13 AB4 MET B 89 TYR B 98 1 10 HELIX 14 AB5 GLY B 143 HIS B 148 1 6 HELIX 15 AB6 PRO B 149 GLY B 153 5 5 HELIX 16 AB7 ASP B 171 ASN B 175 5 5 HELIX 17 AB8 LEU B 180 TYR B 187 5 8 HELIX 18 AB9 ASN C 42 GLN C 48 1 7 HELIX 19 AC1 SER C 64 MET C 67 5 4 HELIX 20 AC2 PRO C 93 THR C 96 5 4 HELIX 21 AC3 THR C 97 SER C 104 1 8 HELIX 22 AC4 SER C 143 MET C 148 1 6 HELIX 23 AC5 ASP D 34 SER D 38 5 5 SHEET 1 AA1 5 LEU A 37 ASP A 38 0 SHEET 2 AA1 5 THR C 162 VAL C 167 -1 O THR C 162 N ASP A 38 SHEET 3 AA1 5 LEU C 113 PHE C 119 -1 N LEU C 113 O VAL C 167 SHEET 4 AA1 5 ASN C 206 ALA C 215 -1 O SER C 214 N ARG C 114 SHEET 5 AA1 5 THR C 51 LEU C 52 -1 N THR C 51 O VAL C 213 SHEET 1 AA2 5 LEU A 37 ASP A 38 0 SHEET 2 AA2 5 THR C 162 VAL C 167 -1 O THR C 162 N ASP A 38 SHEET 3 AA2 5 LEU C 113 PHE C 119 -1 N LEU C 113 O VAL C 167 SHEET 4 AA2 5 ASN C 206 ALA C 215 -1 O SER C 214 N ARG C 114 SHEET 5 AA2 5 THR C 69 ARG C 73 -1 N VAL C 70 O MET C 209 SHEET 1 AA3 4 GLY A 78 ASN A 86 0 SHEET 2 AA3 4 SER A 238 PRO A 256 -1 O ILE A 244 N ILE A 80 SHEET 3 AA3 4 PHE A 121 ALA A 138 -1 N GLU A 129 O LYS A 247 SHEET 4 AA3 4 TYR A 198 TYR A 199 -1 O TYR A 198 N THR A 124 SHEET 1 AA4 4 ARG A 186 ILE A 189 0 SHEET 2 AA4 4 PHE A 121 ALA A 138 -1 N SER A 128 O ILE A 189 SHEET 3 AA4 4 SER A 238 PRO A 256 -1 O LYS A 247 N GLU A 129 SHEET 4 AA4 4 GLN C 39 VAL C 40 -1 O VAL C 40 N ALA A 253 SHEET 1 AA5 4 PHE A 101 LYS A 105 0 SHEET 2 AA5 4 THR A 224 ILE A 229 -1 O VAL A 227 N LYS A 102 SHEET 3 AA5 4 VAL A 147 VAL A 153 -1 N MET A 151 O CYS A 226 SHEET 4 AA5 4 SER A 175 GLN A 179 -1 O TRP A 178 N LEU A 148 SHEET 1 AA6 2 ILE B 14 ARG B 18 0 SHEET 2 AA6 2 SER B 21 SER B 25 -1 O SER B 21 N ARG B 18 SHEET 1 AA7 5 VAL B 32 VAL B 33 0 SHEET 2 AA7 5 SER B 199 LEU B 204 1 O ILE B 203 N VAL B 32 SHEET 3 AA7 5 HIS B 99 GLN B 111 -1 N TYR B 106 O LEU B 204 SHEET 4 AA7 5 ILE B 241 PRO B 257 -1 O SER B 246 N HIS B 109 SHEET 5 AA7 5 TYR B 64 THR B 65 -1 N TYR B 64 O ILE B 247 SHEET 1 AA8 5 VAL B 32 VAL B 33 0 SHEET 2 AA8 5 SER B 199 LEU B 204 1 O ILE B 203 N VAL B 32 SHEET 3 AA8 5 HIS B 99 GLN B 111 -1 N TYR B 106 O LEU B 204 SHEET 4 AA8 5 ILE B 241 PRO B 257 -1 O SER B 246 N HIS B 109 SHEET 5 AA8 5 ARG B 69 TRP B 71 -1 N TRP B 71 O ILE B 241 SHEET 1 AA9 5 ARG B 154 GLU B 155 0 SHEET 2 AA9 5 TRP B 78 LEU B 82 -1 N TRP B 79 O ARG B 154 SHEET 3 AA9 5 TRP B 221 GLN B 232 -1 O TRP B 221 N LEU B 82 SHEET 4 AA9 5 GLN B 119 PRO B 128 -1 N ALA B 125 O VAL B 224 SHEET 5 AA9 5 HIS B 189 ASN B 193 -1 O GLN B 190 N VAL B 124 SHEET 1 AB1 4 GLU C 81 PRO C 86 0 SHEET 2 AB1 4 TYR C 188 VAL C 198 -1 O CYS C 191 N VAL C 82 SHEET 3 AB1 4 THR C 126 THR C 134 -1 N ALA C 132 O THR C 190 SHEET 4 AB1 4 THR C 151 ASP C 156 -1 O THR C 151 N TYR C 133 SHEET 1 AB2 3 ARG C 176 PHE C 177 0 SHEET 2 AB2 3 HIS C 108 THR C 110 -1 N TRP C 109 O ARG C 176 SHEET 3 AB2 3 CYS C 220 LEU C 221 -1 O CYS C 220 N THR C 110 CISPEP 1 LEU B 82 PRO B 83 0 7.42 CISPEP 2 GLN C 92 PRO C 93 0 2.14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000