HEADER IMMUNE SYSTEM 01-JUL-24 9FX2 TITLE STRUCTURE OF METHYLAMINE ACTIVATED CD109 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD109 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 150 KDA TGF-BETA-1-BINDING PROTEIN,C3 AND PZP-LIKE ALPHA-2- COMPND 5 MACROGLOBULIN DOMAIN-CONTAINING PROTEIN 7,PLATELET-SPECIFIC GOV COMPND 6 ANTIGEN,P180,R150; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD109, CPAMD7; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PROTEASE INHIBITOR, THIOESTER ACTIVATION, INTERMEDIATE CONFORMATION, KEYWDS 2 ALPHA-MACROGLOBULIN, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR A.V.ALMEIDA,G.R.ANDERSEN REVDAT 2 17-SEP-25 9FX2 1 JRNL REVDAT 1 19-MAR-25 9FX2 0 JRNL AUTH A.V.ALMEIDA,K.T.JENSEN,S.L.HARWOOD,M.H.JORGENSEN, JRNL AUTH 2 N.S.NIELSEN,I.B.THOGERSEN,J.J.ENGHILD,G.R.ANDERSEN JRNL TITL THREE CRYO-EM STRUCTURES OF CD109 REVEAL ITS MECHANISM OF JRNL TITL 2 PROTEASE INHIBITION. JRNL REF CELL REP V. 44 15787 2025 JRNL REFN ESSN 2211-1247 JRNL PMID 40482031 JRNL DOI 10.1016/J.CELREP.2025.115787 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, COOT, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 230644 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9FX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139824. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : MONOMERIC METHYLAMINE NON-GPI REMARK 245 BOUNDED CD109 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : C-TERMINAL GPI-MOTIF (RESIDUES REMARK 245 1421-1445) WAS REMOVED REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 11076 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOCONTINUUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1700.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 ASN A 307 REMARK 465 GLY A 308 REMARK 465 LEU A 309 REMARK 465 SER A 310 REMARK 465 GLU A 311 REMARK 465 TYR A 312 REMARK 465 LEU A 313 REMARK 465 ASP A 314 REMARK 465 LEU A 315 REMARK 465 THR A 399 REMARK 465 GLU A 400 REMARK 465 TYR A 401 REMARK 465 TRP A 402 REMARK 465 SER A 403 REMARK 465 GLY A 404 REMARK 465 SER A 405 REMARK 465 ASN A 406 REMARK 465 SER A 407 REMARK 465 GLY A 408 REMARK 465 ASN A 409 REMARK 465 GLN A 410 REMARK 465 LYS A 648 REMARK 465 ASP A 649 REMARK 465 TYR A 650 REMARK 465 ILE A 651 REMARK 465 ASP A 652 REMARK 465 GLY A 653 REMARK 465 VAL A 654 REMARK 465 TYR A 655 REMARK 465 ASP A 656 REMARK 465 ASN A 657 REMARK 465 ALA A 658 REMARK 465 GLU A 659 REMARK 465 TYR A 660 REMARK 465 ALA A 661 REMARK 465 GLU A 662 REMARK 465 ARG A 663 REMARK 465 GLU A 664 REMARK 465 ASN A 665 REMARK 465 LEU A 666 REMARK 465 TYR A 667 REMARK 465 PHE A 668 REMARK 465 GLN A 669 REMARK 465 GLY A 670 REMARK 465 HIS A 671 REMARK 465 ILE A 672 REMARK 465 VAL A 673 REMARK 465 ASP A 674 REMARK 465 ILE A 675 REMARK 465 HIS A 676 REMARK 465 ASP A 677 REMARK 465 PHE A 678 REMARK 465 SER A 679 REMARK 465 LEU A 680 REMARK 465 GLY A 681 REMARK 465 SER A 682 REMARK 465 SER A 683 REMARK 465 PRO A 684 REMARK 465 HIS A 685 REMARK 465 VAL A 686 REMARK 465 ARG A 687 REMARK 465 LYS A 688 REMARK 465 SER A 1129 REMARK 465 LYS A 1130 REMARK 465 LEU A 1131 REMARK 465 SER A 1132 REMARK 465 ASP A 1133 REMARK 465 SER A 1134 REMARK 465 TRP A 1135 REMARK 465 GLN A 1136 REMARK 465 PRO A 1137 REMARK 465 ARG A 1138 REMARK 465 ALA A 1265 REMARK 465 SER A 1266 REMARK 465 GLY A 1267 REMARK 465 SER A 1268 REMARK 465 SER A 1269 REMARK 465 ARG A 1270 REMARK 465 ARG A 1271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 421 C VAL A 422 N 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 50 -40.25 -133.63 REMARK 500 PRO A 53 -178.83 -69.64 REMARK 500 VAL A 73 -61.50 -93.53 REMARK 500 ASN A 211 -90.32 58.64 REMARK 500 VAL A 225 70.74 49.45 REMARK 500 ASN A 365 116.37 -37.53 REMARK 500 THR A 515 31.22 -96.73 REMARK 500 PHE A 626 -8.23 79.88 REMARK 500 ALA A 644 56.54 -94.54 REMARK 500 ASN A 645 13.41 -141.18 REMARK 500 THR A 718 -167.98 -167.72 REMARK 500 ASN A 753 57.67 -94.51 REMARK 500 LEU A 868 30.32 -99.28 REMARK 500 LYS A 943 60.64 61.22 REMARK 500 ASN A1042 70.37 59.83 REMARK 500 LYS A1043 1.14 -68.72 REMARK 500 GLN A1157 59.26 -96.25 REMARK 500 LEU A1175 17.81 -140.31 REMARK 500 SER A1180 -160.99 60.40 REMARK 500 ASN A1204 41.05 -140.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50841 RELATED DB: EMDB REMARK 900 STRUCTURE OF METHYLAMINE ACTIVATED CD109 DBREF 9FX2 A 22 1271 UNP Q6YHK3 CD109_HUMAN 22 1271 SEQADV 9FX2 SER A 19 UNP Q6YHK3 EXPRESSION TAG SEQADV 9FX2 GLY A 20 UNP Q6YHK3 EXPRESSION TAG SEQADV 9FX2 SER A 21 UNP Q6YHK3 EXPRESSION TAG SEQADV 9FX2 GLU A 664 UNP Q6YHK3 PHE 664 CONFLICT SEQADV 9FX2 ASN A 665 UNP Q6YHK3 MET 665 CONFLICT SEQADV 9FX2 LEU A 666 UNP Q6YHK3 GLU 666 CONFLICT SEQADV 9FX2 TYR A 667 UNP Q6YHK3 GLU 667 CONFLICT SEQADV 9FX2 PHE A 668 UNP Q6YHK3 ASN 668 CONFLICT SEQADV 9FX2 GLN A 669 UNP Q6YHK3 GLU 669 CONFLICT SEQRES 1 A 1253 SER GLY SER VAL ALA PRO GLY PRO ARG PHE LEU VAL THR SEQRES 2 A 1253 ALA PRO GLY ILE ILE ARG PRO GLY GLY ASN VAL THR ILE SEQRES 3 A 1253 GLY VAL GLU LEU LEU GLU HIS CYS PRO SER GLN VAL THR SEQRES 4 A 1253 VAL LYS ALA GLU LEU LEU LYS THR ALA SER ASN LEU THR SEQRES 5 A 1253 VAL SER VAL LEU GLU ALA GLU GLY VAL PHE GLU LYS GLY SEQRES 6 A 1253 SER PHE LYS THR LEU THR LEU PRO SER LEU PRO LEU ASN SEQRES 7 A 1253 SER ALA ASP GLU ILE TYR GLU LEU ARG VAL THR GLY ARG SEQRES 8 A 1253 THR GLN ASP GLU ILE LEU PHE SER ASN SER THR ARG LEU SEQRES 9 A 1253 SER PHE GLU THR LYS ARG ILE SER VAL PHE ILE GLN THR SEQRES 10 A 1253 ASP LYS ALA LEU TYR LYS PRO LYS GLN GLU VAL LYS PHE SEQRES 11 A 1253 ARG ILE VAL THR LEU PHE SER ASP PHE LYS PRO TYR LYS SEQRES 12 A 1253 THR SER LEU ASN ILE LEU ILE LYS ASP PRO LYS SER ASN SEQRES 13 A 1253 LEU ILE GLN GLN TRP LEU SER GLN GLN SER ASP LEU GLY SEQRES 14 A 1253 VAL ILE SER LYS THR PHE GLN LEU SER SER HIS PRO ILE SEQRES 15 A 1253 LEU GLY ASP TRP SER ILE GLN VAL GLN VAL ASN ASP GLN SEQRES 16 A 1253 THR TYR TYR GLN SER PHE GLN VAL SER GLU TYR VAL LEU SEQRES 17 A 1253 PRO LYS PHE GLU VAL THR LEU GLN THR PRO LEU TYR CYS SEQRES 18 A 1253 SER MET ASN SER LYS HIS LEU ASN GLY THR ILE THR ALA SEQRES 19 A 1253 LYS TYR THR TYR GLY LYS PRO VAL LYS GLY ASP VAL THR SEQRES 20 A 1253 LEU THR PHE LEU PRO LEU SER PHE TRP GLY LYS LYS LYS SEQRES 21 A 1253 ASN ILE THR LYS THR PHE LYS ILE ASN GLY SER ALA ASN SEQRES 22 A 1253 PHE SER PHE ASN ASP GLU GLU MET LYS ASN VAL MET ASP SEQRES 23 A 1253 SER SER ASN GLY LEU SER GLU TYR LEU ASP LEU SER SER SEQRES 24 A 1253 PRO GLY PRO VAL GLU ILE LEU THR THR VAL THR GLU SER SEQRES 25 A 1253 VAL THR GLY ILE SER ARG ASN VAL SER THR ASN VAL PHE SEQRES 26 A 1253 PHE LYS GLN HIS ASP TYR ILE ILE GLU PHE PHE ASP TYR SEQRES 27 A 1253 THR THR VAL LEU LYS PRO SER LEU ASN PHE THR ALA THR SEQRES 28 A 1253 VAL LYS VAL THR ARG ALA ASP GLY ASN GLN LEU THR LEU SEQRES 29 A 1253 GLU GLU ARG ARG ASN ASN VAL VAL ILE THR VAL THR GLN SEQRES 30 A 1253 ARG ASN TYR THR GLU TYR TRP SER GLY SER ASN SER GLY SEQRES 31 A 1253 ASN GLN LYS MET GLU ALA VAL GLN LYS ILE ASN TYR THR SEQRES 32 A 1253 VAL PRO GLN SER GLY THR PHE LYS ILE GLU PHE PRO ILE SEQRES 33 A 1253 LEU GLU ASP SER SER GLU LEU GLN LEU LYS ALA TYR PHE SEQRES 34 A 1253 LEU GLY SER LYS SER SER MET ALA VAL HIS SER LEU PHE SEQRES 35 A 1253 LYS SER PRO SER LYS THR TYR ILE GLN LEU LYS THR ARG SEQRES 36 A 1253 ASP GLU ASN ILE LYS VAL GLY SER PRO PHE GLU LEU VAL SEQRES 37 A 1253 VAL SER GLY ASN LYS ARG LEU LYS GLU LEU SER TYR MET SEQRES 38 A 1253 VAL VAL SER ARG GLY GLN LEU VAL ALA VAL GLY LYS GLN SEQRES 39 A 1253 ASN SER THR MET PHE SER LEU THR PRO GLU ASN SER TRP SEQRES 40 A 1253 THR PRO LYS ALA CYS VAL ILE VAL TYR TYR ILE GLU ASP SEQRES 41 A 1253 ASP GLY GLU ILE ILE SER ASP VAL LEU LYS ILE PRO VAL SEQRES 42 A 1253 GLN LEU VAL PHE LYS ASN LYS ILE LYS LEU TYR TRP SER SEQRES 43 A 1253 LYS VAL LYS ALA GLU PRO SER GLU LYS VAL SER LEU ARG SEQRES 44 A 1253 ILE SER VAL THR GLN PRO ASP SER ILE VAL GLY ILE VAL SEQRES 45 A 1253 ALA VAL ASP LYS SER VAL ASN LEU MET ASN ALA SER ASN SEQRES 46 A 1253 ASP ILE THR MET GLU ASN VAL VAL HIS GLU LEU GLU LEU SEQRES 47 A 1253 TYR ASN THR GLY TYR TYR LEU GLY MET PHE MET ASN SER SEQRES 48 A 1253 PHE ALA VAL PHE GLN GLU CYS GLY LEU TRP VAL LEU THR SEQRES 49 A 1253 ASP ALA ASN LEU THR LYS ASP TYR ILE ASP GLY VAL TYR SEQRES 50 A 1253 ASP ASN ALA GLU TYR ALA GLU ARG GLU ASN LEU TYR PHE SEQRES 51 A 1253 GLN GLY HIS ILE VAL ASP ILE HIS ASP PHE SER LEU GLY SEQRES 52 A 1253 SER SER PRO HIS VAL ARG LYS HIS PHE PRO GLU THR TRP SEQRES 53 A 1253 ILE TRP LEU ASP THR ASN MET GLY TYR ARG ILE TYR GLN SEQRES 54 A 1253 GLU PHE GLU VAL THR VAL PRO ASP SER ILE THR SER TRP SEQRES 55 A 1253 VAL ALA THR GLY PHE VAL ILE SER GLU ASP LEU GLY LEU SEQRES 56 A 1253 GLY LEU THR THR THR PRO VAL GLU LEU GLN ALA PHE GLN SEQRES 57 A 1253 PRO PHE PHE ILE PHE LEU ASN LEU PRO TYR SER VAL ILE SEQRES 58 A 1253 ARG GLY GLU GLU PHE ALA LEU GLU ILE THR ILE PHE ASN SEQRES 59 A 1253 TYR LEU LYS ASP ALA THR GLU VAL LYS VAL ILE ILE GLU SEQRES 60 A 1253 LYS SER ASP LYS PHE ASP ILE LEU MET THR SER ASN GLU SEQRES 61 A 1253 ILE ASN ALA THR GLY HIS GLN GLN THR LEU LEU VAL PRO SEQRES 62 A 1253 SER GLU ASP GLY ALA THR VAL LEU PHE PRO ILE ARG PRO SEQRES 63 A 1253 THR HIS LEU GLY GLU ILE PRO ILE THR VAL THR ALA LEU SEQRES 64 A 1253 SER PRO THR ALA SER ASP ALA VAL THR GLN MET ILE LEU SEQRES 65 A 1253 VAL LYS ALA GLU GLY ILE GLU LYS SER TYR SER GLN SER SEQRES 66 A 1253 ILE LEU LEU ASP LEU THR ASP ASN ARG LEU GLN SER THR SEQRES 67 A 1253 LEU LYS THR LEU SER PHE SER PHE PRO PRO ASN THR VAL SEQRES 68 A 1253 THR GLY SER GLU ARG VAL GLN ILE THR ALA ILE GLY ASP SEQRES 69 A 1253 VAL LEU GLY PRO SER ILE ASN GLY LEU ALA SER LEU ILE SEQRES 70 A 1253 ARG MET PRO TYR GLY CYS GLY GLU GLN ASN MET ILE ASN SEQRES 71 A 1253 PHE ALA PRO ASN ILE TYR ILE LEU ASP TYR LEU THR LYS SEQRES 72 A 1253 LYS LYS GLN LEU THR ASP ASN LEU LYS GLU LYS ALA LEU SEQRES 73 A 1253 SER PHE MET ARG GLN GLY TYR GLN ARG GLU LEU LEU TYR SEQRES 74 A 1253 GLN ARG GLU ASP GLY SER PHE SER ALA PHE GLY ASN TYR SEQRES 75 A 1253 ASP PRO SER GLY SER THR TRP LEU SER ALA PHE VAL LEU SEQRES 76 A 1253 ARG CYS PHE LEU GLU ALA ASP PRO TYR ILE ASP ILE ASP SEQRES 77 A 1253 GLN ASN VAL LEU HIS ARG THR TYR THR TRP LEU LYS GLY SEQRES 78 A 1253 HIS GLN LYS SER ASN GLY GLU PHE TRP ASP PRO GLY ARG SEQRES 79 A 1253 VAL ILE HIS SER GLU LEU GLN GLY GLY ASN LYS SER PRO SEQRES 80 A 1253 VAL THR LEU THR ALA TYR ILE VAL THR SER LEU LEU GLY SEQRES 81 A 1253 TYR ARG LYS TYR GLN PRO ASN ILE ASP VAL GLN GLU SER SEQRES 82 A 1253 ILE HIS PHE LEU GLU SER GLU PHE SER ARG GLY ILE SER SEQRES 83 A 1253 ASP ASN TYR THR LEU ALA LEU ILE THR TYR ALA LEU SER SEQRES 84 A 1253 SER VAL GLY SER PRO LYS ALA LYS GLU ALA LEU ASN MET SEQRES 85 A 1253 LEU THR TRP ARG ALA GLU GLN GLU GLY GLY MET GLN PHE SEQRES 86 A 1253 TRP VAL SER SER GLU SER LYS LEU SER ASP SER TRP GLN SEQRES 87 A 1253 PRO ARG SER LEU ASP ILE GLU VAL ALA ALA TYR ALA LEU SEQRES 88 A 1253 LEU SER HIS PHE LEU GLN PHE GLN THR SER GLU GLY ILE SEQRES 89 A 1253 PRO ILE MET ARG TRP LEU SER ARG GLN ARG ASN SER LEU SEQRES 90 A 1253 GLY GLY PHE ALA SER THR GLN ASP THR THR VAL ALA LEU SEQRES 91 A 1253 LYS ALA LEU SER GLU PHE ALA ALA LEU MET ASN THR GLU SEQRES 92 A 1253 ARG THR ASN ILE GLN VAL THR VAL THR GLY PRO SER SER SEQRES 93 A 1253 PRO SER PRO VAL LYS PHE LEU ILE ASP THR HIS ASN ARG SEQRES 94 A 1253 LEU LEU LEU GLN THR ALA GLU LEU ALA VAL VAL GLN PRO SEQRES 95 A 1253 THR ALA VAL ASN ILE SER ALA ASN GLY PHE GLY PHE ALA SEQRES 96 A 1253 ILE CYS GLN LEU ASN VAL VAL TYR ASN VAL LYS ALA SER SEQRES 97 A 1253 GLY SER SER ARG ARG HET NAG A1301 14 HET NAG A1302 14 HET NAG A1303 14 HET NAG A1304 14 HET NAG A1305 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 5(C8 H15 N O6) HELIX 1 AA1 ASN A 301 SER A 306 1 6 HELIX 2 AA2 THR A 381 ASN A 387 1 7 HELIX 3 AA3 GLU A 522 THR A 526 5 5 HELIX 4 AA4 LYS A 594 ASN A 600 1 7 HELIX 5 AA5 THR A 606 ASN A 618 1 13 HELIX 6 AA6 MET A 627 GLU A 635 1 9 HELIX 7 AA7 SER A 907 LEU A 914 1 8 HELIX 8 AA8 CYS A 921 LYS A 943 1 23 HELIX 9 AA9 THR A 946 TYR A 967 1 22 HELIX 10 AB1 PHE A 977 ASP A 981 5 5 HELIX 11 AB2 SER A 985 ASP A 1000 1 16 HELIX 12 AB3 ASP A 1006 HIS A 1020 1 15 HELIX 13 AB4 HIS A 1035 GLY A 1040 1 6 HELIX 14 AB5 SER A 1044 LEU A 1057 1 14 HELIX 15 AB6 GLY A 1058 TYR A 1062 5 5 HELIX 16 AB7 VAL A 1068 GLY A 1082 1 15 HELIX 17 AB8 ASP A 1085 VAL A 1099 1 15 HELIX 18 AB9 PRO A 1102 ARG A 1114 1 13 HELIX 19 AC1 LEU A 1140 GLN A 1155 1 16 HELIX 20 AC2 THR A 1158 GLU A 1160 5 3 HELIX 21 AC3 GLY A 1161 GLN A 1171 1 11 HELIX 22 AC4 THR A 1181 MET A 1198 1 18 SHEET 1 AA1 4 PHE A 85 THR A 89 0 SHEET 2 AA1 4 THR A 43 LEU A 48 -1 N VAL A 46 O LYS A 86 SHEET 3 AA1 4 PHE A 28 PRO A 33 -1 N THR A 31 O GLY A 45 SHEET 4 AA1 4 LEU A 638 THR A 642 -1 O TRP A 639 N ALA A 32 SHEET 1 AA2 5 ILE A 35 ILE A 36 0 SHEET 2 AA2 5 ILE A 114 PHE A 124 1 O SER A 123 N ILE A 36 SHEET 3 AA2 5 TYR A 102 ARG A 109 -1 N VAL A 106 O ASN A 118 SHEET 4 AA2 5 GLN A 55 LEU A 63 -1 N GLU A 61 O ARG A 105 SHEET 5 AA2 5 SER A 72 GLU A 81 -1 O GLY A 78 N VAL A 58 SHEET 1 AA3 3 SER A 130 THR A 135 0 SHEET 2 AA3 3 GLU A 145 LEU A 153 -1 O ARG A 149 N GLN A 134 SHEET 3 AA3 3 VAL A 188 GLN A 194 -1 O PHE A 193 N VAL A 146 SHEET 1 AA4 5 LEU A 139 TYR A 140 0 SHEET 2 AA4 5 GLN A 213 VAL A 221 1 O GLN A 220 N TYR A 140 SHEET 3 AA4 5 GLY A 202 VAL A 210 -1 N VAL A 210 O GLN A 213 SHEET 4 AA4 5 SER A 163 LYS A 169 -1 N LEU A 167 O GLN A 207 SHEET 5 AA4 5 LEU A 175 GLN A 183 -1 O TRP A 179 N ILE A 166 SHEET 1 AA5 3 PHE A 229 GLN A 234 0 SHEET 2 AA5 3 LEU A 246 TYR A 254 -1 O LYS A 253 N GLU A 230 SHEET 3 AA5 3 SER A 289 PHE A 294 -1 O PHE A 292 N GLY A 248 SHEET 1 AA6 5 TYR A 238 SER A 240 0 SHEET 2 AA6 5 SER A 335 LYS A 345 1 O LYS A 345 N CYS A 239 SHEET 3 AA6 5 VAL A 321 GLU A 329 -1 N THR A 325 O VAL A 338 SHEET 4 AA6 5 LYS A 261 PRO A 270 -1 N ASP A 263 O THR A 328 SHEET 5 AA6 5 ILE A 280 ASN A 287 -1 O LYS A 282 N LEU A 266 SHEET 1 AA7 3 TYR A 349 PHE A 354 0 SHEET 2 AA7 3 PHE A 366 ARG A 374 -1 O THR A 373 N ILE A 350 SHEET 3 AA7 3 THR A 427 PHE A 432 -1 O PHE A 428 N VAL A 370 SHEET 1 AA8 4 GLU A 413 TYR A 420 0 SHEET 2 AA8 4 VAL A 389 ARG A 396 -1 N VAL A 389 O TYR A 420 SHEET 3 AA8 4 GLU A 440 PHE A 447 -1 O GLU A 440 N ARG A 396 SHEET 4 AA8 4 SER A 450 VAL A 456 -1 O SER A 452 N ALA A 445 SHEET 1 AA9 3 ILE A 468 LYS A 471 0 SHEET 2 AA9 3 PHE A 483 GLY A 489 -1 O VAL A 486 N LYS A 471 SHEET 3 AA9 3 MET A 516 LEU A 519 -1 O LEU A 519 N PHE A 483 SHEET 1 AB1 4 GLN A 505 GLN A 512 0 SHEET 2 AB1 4 LEU A 496 SER A 502 -1 N SER A 502 O GLN A 505 SHEET 3 AB1 4 LYS A 528 ILE A 536 -1 O ILE A 532 N MET A 499 SHEET 4 AB1 4 ILE A 542 PRO A 550 -1 O ILE A 543 N TYR A 535 SHEET 1 AB2 3 ILE A 559 TRP A 563 0 SHEET 2 AB2 3 LYS A 573 VAL A 580 -1 O ARG A 577 N TYR A 562 SHEET 3 AB2 3 TYR A 706 THR A 712 -1 O VAL A 711 N VAL A 574 SHEET 1 AB3 5 LYS A 567 ALA A 568 0 SHEET 2 AB3 5 VAL A 740 ALA A 744 1 O GLN A 743 N ALA A 568 SHEET 3 AB3 5 THR A 718 SER A 728 -1 N ALA A 722 O VAL A 740 SHEET 4 AB3 5 ILE A 586 VAL A 592 -1 N VAL A 592 O VAL A 721 SHEET 5 AB3 5 THR A 693 ASN A 700 -1 O THR A 699 N VAL A 587 SHEET 1 AB4 4 LYS A 567 ALA A 568 0 SHEET 2 AB4 4 VAL A 740 ALA A 744 1 O GLN A 743 N ALA A 568 SHEET 3 AB4 4 THR A 718 SER A 728 -1 N ALA A 722 O VAL A 740 SHEET 4 AB4 4 GLY A 732 LEU A 735 -1 O GLY A 734 N VAL A 726 SHEET 1 AB5 4 PHE A 748 LEU A 752 0 SHEET 2 AB5 4 PHE A 764 ASN A 772 -1 O THR A 769 N PHE A 751 SHEET 3 AB5 4 ASP A 814 PRO A 824 -1 O ASP A 814 N ASN A 772 SHEET 4 AB5 4 PHE A 790 ILE A 792 -1 N ASP A 791 O ARG A 823 SHEET 1 AB6 5 SER A 757 ILE A 759 0 SHEET 2 AB6 5 SER A 842 LYS A 852 1 O LYS A 852 N VAL A 758 SHEET 3 AB6 5 GLY A 828 LEU A 837 -1 N GLY A 828 O VAL A 851 SHEET 4 AB6 5 THR A 778 ILE A 784 -1 N ILE A 783 O THR A 835 SHEET 5 AB6 5 GLN A 805 VAL A 810 -1 O VAL A 810 N THR A 778 SHEET 1 AB7 4 ILE A 856 LEU A 868 0 SHEET 2 AB7 4 GLY A1251 VAL A1263 -1 O LEU A1257 N GLN A 862 SHEET 3 AB7 4 ARG A 894 ILE A 900 -1 N THR A 898 O GLN A1256 SHEET 4 AB7 4 GLN A1231 LEU A1235 -1 O LEU A1235 N VAL A 895 SHEET 1 AB8 4 SER A 875 PHE A 882 0 SHEET 2 AB8 4 THR A1241 ASN A1248 -1 O ILE A1245 N LYS A 878 SHEET 3 AB8 4 ASN A1204 GLY A1211 -1 N THR A1208 O SER A1246 SHEET 4 AB8 4 SER A1214 ASP A1223 -1 O ILE A1222 N ILE A1205 SHEET 1 AB9 2 GLU A1116 GLN A1117 0 SHEET 2 AB9 2 GLN A1122 PHE A1123 -1 O PHE A1123 N GLU A1116 SSBOND 1 CYS A 530 CYS A 636 1555 1555 2.03 LINK ND2 ASN A 41 C1 NAG A1301 1555 1555 1.44 LINK ND2 ASN A 118 C1 NAG A1302 1555 1555 1.45 LINK ND2 ASN A 365 C1 NAG A1304 1555 1555 1.43 LINK ND2 ASN A 419 C1 NAG A1305 1555 1555 1.47 LINK ND2 ASN A1244 C1 NAG A1303 1555 1555 1.44 CISPEP 1 THR A 526 PRO A 527 0 -2.36 CISPEP 2 GLN A 1239 PRO A 1240 0 -0.73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 133 9243 CONECT 722 9257 CONECT 2646 9285 CONECT 2985 9299 CONECT 3855 4700 CONECT 4700 3855 CONECT 9090 9271 CONECT 9243 133 9244 9254 CONECT 9244 9243 9245 9251 CONECT 9245 9244 9246 9252 CONECT 9246 9245 9247 9253 CONECT 9247 9246 9248 9254 CONECT 9248 9247 9255 CONECT 9249 9250 9251 9256 CONECT 9250 9249 CONECT 9251 9244 9249 CONECT 9252 9245 CONECT 9253 9246 CONECT 9254 9243 9247 CONECT 9255 9248 CONECT 9256 9249 CONECT 9257 722 9258 9268 CONECT 9258 9257 9259 9265 CONECT 9259 9258 9260 9266 CONECT 9260 9259 9261 9267 CONECT 9261 9260 9262 9268 CONECT 9262 9261 9269 CONECT 9263 9264 9265 9270 CONECT 9264 9263 CONECT 9265 9258 9263 CONECT 9266 9259 CONECT 9267 9260 CONECT 9268 9257 9261 CONECT 9269 9262 CONECT 9270 9263 CONECT 9271 9090 9272 9282 CONECT 9272 9271 9273 9279 CONECT 9273 9272 9274 9280 CONECT 9274 9273 9275 9281 CONECT 9275 9274 9276 9282 CONECT 9276 9275 9283 CONECT 9277 9278 9279 9284 CONECT 9278 9277 CONECT 9279 9272 9277 CONECT 9280 9273 CONECT 9281 9274 CONECT 9282 9271 9275 CONECT 9283 9276 CONECT 9284 9277 CONECT 9285 2646 9286 9296 CONECT 9286 9285 9287 9293 CONECT 9287 9286 9288 9294 CONECT 9288 9287 9289 9295 CONECT 9289 9288 9290 9296 CONECT 9290 9289 9297 CONECT 9291 9292 9293 9298 CONECT 9292 9291 CONECT 9293 9286 9291 CONECT 9294 9287 CONECT 9295 9288 CONECT 9296 9285 9289 CONECT 9297 9290 CONECT 9298 9291 CONECT 9299 2985 9300 9310 CONECT 9300 9299 9301 9307 CONECT 9301 9300 9302 9308 CONECT 9302 9301 9303 9309 CONECT 9303 9302 9304 9310 CONECT 9304 9303 9311 CONECT 9305 9306 9307 9312 CONECT 9306 9305 CONECT 9307 9300 9305 CONECT 9308 9301 CONECT 9309 9302 CONECT 9310 9299 9303 CONECT 9311 9304 CONECT 9312 9305 MASTER 249 0 5 22 70 0 0 6 9311 1 77 97 END