HEADER FLAVOPROTEIN 02-JUL-24 9FXQ TITLE ANCESTRAL PRENYLCYSTEINE OXIDASE 1 (PCYOX1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANCESTRAL PRENYLCYSTEINE OXIDASE 1 (PCYOX1); COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.3.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAMMALIA; SOURCE 3 ORGANISM_TAXID: 40674; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, FLAVOPROTEIN, OXIDATIVE METABOLISM, PROTEIN KEYWDS 2 PRENYLATION, ANCESTRAL ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR M.BARONE,A.MATTEVI REVDAT 2 30-OCT-24 9FXQ 1 JRNL REVDAT 1 16-OCT-24 9FXQ 0 JRNL AUTH M.BARONE,L.PIZZORNI,M.W.FRAAIJE,M.L.MASCOTTI,A.MATTEVI JRNL TITL EVOLUTION, STRUCTURE, AND DRUG-METABOLIZING ACTIVITY OF JRNL TITL 2 MAMMALIAN PRENYLCYSTEINE OXIDASES. JRNL REF J.BIOL.CHEM. V. 300 07810 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39322016 JRNL DOI 10.1016/J.JBC.2024.107810 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 122.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.4500 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.5030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 150.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.444 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.431 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 63.366 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3852 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3584 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5232 ; 1.993 ; 1.820 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8254 ; 0.631 ; 1.745 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 7.809 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 17 ;11.764 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;17.094 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4465 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 900 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1857 ;10.432 ;10.624 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1857 ;10.420 ;10.625 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2316 ;15.570 ;19.065 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2317 ;15.567 ;19.069 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1995 ;12.251 ;11.343 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1992 ;12.188 ;11.345 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2917 ;18.516 ;20.504 REMARK 3 LONG RANGE B REFINED ATOMS (A**2):273395 ;27.407 ;77.520 REMARK 3 LONG RANGE B OTHER ATOMS (A**2):273396 ;27.407 ;77.520 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): -24.1805 19.7459 -21.2617 REMARK 3 T TENSOR REMARK 3 T11: 0.3613 T22: 0.3369 REMARK 3 T33: 0.0399 T12: -0.2768 REMARK 3 T13: 0.0085 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.2862 L22: 4.0910 REMARK 3 L33: 2.5618 L12: -0.2310 REMARK 3 L13: 0.2279 L23: -1.3779 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.1181 S13: 0.1202 REMARK 3 S21: 0.5924 S22: -0.1300 S23: -0.2527 REMARK 3 S31: -0.4839 S32: 0.4680 S33: 0.1818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9FXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.13 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16624 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 172.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 57.60 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M HEPES, REMARK 280 5% ISOPROPANOL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 86.32950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.32950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 86.32950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.32950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 86.32950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 86.32950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 86.32950 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 86.32950 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 86.32950 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 86.32950 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 86.32950 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 86.32950 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 86.32950 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 86.32950 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 86.32950 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 86.32950 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 86.32950 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 86.32950 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 129.49425 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 43.16475 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 43.16475 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 129.49425 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 129.49425 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 129.49425 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 43.16475 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 43.16475 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 129.49425 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 43.16475 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 129.49425 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 43.16475 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 129.49425 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 43.16475 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 43.16475 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 43.16475 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 129.49425 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 43.16475 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 129.49425 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 129.49425 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 129.49425 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 43.16475 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 43.16475 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 129.49425 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 129.49425 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 43.16475 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 43.16475 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 43.16475 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 43.16475 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 129.49425 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 43.16475 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 129.49425 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 43.16475 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 129.49425 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 129.49425 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 129.49425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 362 REMARK 465 LEU A 363 REMARK 465 ALA A 389 REMARK 465 ASP A 390 REMARK 465 ALA A 391 REMARK 465 ALA A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 PRO A 395 REMARK 465 ALA A 396 REMARK 465 THR A 397 REMARK 465 GLU A 501 REMARK 465 LEU A 502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 281 CG CD OE1 NE2 REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 HIS A 333 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 333 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 31.75 -91.17 REMARK 500 LEU A 71 42.78 -92.78 REMARK 500 SER A 107 58.84 -90.67 REMARK 500 ALA A 110 -159.62 -94.06 REMARK 500 GLU A 120 -57.51 -137.83 REMARK 500 ARG A 278 -160.43 -108.70 REMARK 500 THR A 279 87.28 -154.96 REMARK 500 GLN A 281 -38.67 -39.60 REMARK 500 THR A 282 46.30 -79.48 REMARK 500 THR A 285 73.60 -157.49 REMARK 500 LEU A 313 54.95 -105.88 REMARK 500 SER A 318 94.61 -167.26 REMARK 500 LYS A 356 -135.24 46.24 REMARK 500 ALA A 400 -160.15 -104.14 REMARK 500 ALA A 461 130.12 -172.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 438 PRO A 439 -38.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 27 0.22 SIDE CHAIN REMARK 500 ARG A 70 0.29 SIDE CHAIN REMARK 500 ARG A 164 0.28 SIDE CHAIN REMARK 500 ARG A 189 0.10 SIDE CHAIN REMARK 500 ARG A 278 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPS A 601 DBREF 9FXQ A 21 502 PDB 9FXQ 9FXQ 21 502 SEQRES 1 A 482 HIS HIS HIS HIS HIS HIS ARG ALA PRO PRO ASP LYS ILE SEQRES 2 A 482 ALA VAL ILE GLY ALA GLY ILE GLY GLY THR SER ALA ALA SEQRES 3 A 482 TYR TYR LEU ARG GLN LYS PHE GLY LYS ASP VAL GLN ILE SEQRES 4 A 482 ASP VAL PHE GLU ARG GLY GLU VAL GLY GLY ARG LEU ALA SEQRES 5 A 482 THR LEU ASN VAL GLU GLY GLN GLU TYR GLU ALA GLY GLY SEQRES 6 A 482 SER VAL ILE HIS PRO LEU ASN LEU HIS MET LYS ARG PHE SEQRES 7 A 482 VAL LYS GLU LEU GLY LEU SER VAL SER GLN GLY ALA GLY SEQRES 8 A 482 GLY LEU MET GLY ILE TYR ASN GLY GLU THR PHE VAL PHE SEQRES 9 A 482 GLU GLU SER SER TRP PHE ILE ILE ASN VAL ILE LYS LEU SEQRES 10 A 482 LEU TRP HIS TYR GLY PHE GLN PHE LEU ARG MET HIS MET SEQRES 11 A 482 TRP VAL GLU ASP ILE LEU ASP LYS PHE MET ARG ILE TYR SEQRES 12 A 482 ARG TYR GLN SER HIS ASP TYR ALA PHE SER SER VAL GLU SEQRES 13 A 482 GLY LEU LEU HIS ALA LEU GLY GLY ASP GLU PHE THR ARG SEQRES 14 A 482 MET LEU ASN ARG THR ILE LEU GLU ALA LEU GLN LYS ALA SEQRES 15 A 482 GLY PHE SER GLN LYS PHE LEU ASN GLU ILE VAL THR PRO SEQRES 16 A 482 ALA MET ARG VAL ASN TYR GLY GLN SER THR ASN ILE ASN SEQRES 17 A 482 GLY PHE VAL GLY ALA VAL SER LEU ALA GLY ALA ASP SER SEQRES 18 A 482 GLY LEU TRP SER VAL GLU GLY GLY ASN LYS LEU VAL CYS SEQRES 19 A 482 SER GLY LEU LEU GLN ALA SER LYS ALA ARG LEU ILE SER SEQRES 20 A 482 GLY SER VAL THR SER ILE GLU GLU LYS THR ARG THR LYS SEQRES 21 A 482 GLN THR GLY GLY THR VAL LYS LEU TYR GLU VAL THR TYR SEQRES 22 A 482 GLN THR ASP SER GLY THR ALA SER ASP LEU TYR ASP ILE SEQRES 23 A 482 VAL VAL VAL ALA THR PRO LEU ASN ARG LYS MET SER ASN SEQRES 24 A 482 ILE THR PHE LEU ASN PHE ASN PRO PRO ILE PRO GLU PHE SEQRES 25 A 482 HIS LYS TYR TYR HIS GLN THR VAL THR THR PHE VAL HIS SEQRES 26 A 482 GLY ARG LEU ASN ALA SER PHE PHE GLY TYR LYS ALA PRO SEQRES 27 A 482 ASP SER PHE HIS LEU THR ASP ILE LEU THR THR ASP ASN SEQRES 28 A 482 PRO ASP LEU PHE ILE ASN SER ILE GLY VAL VAL SER PRO SEQRES 29 A 482 VAL LYS GLU LYS ALA ASP ALA ALA SER PRO PRO ALA THR SEQRES 30 A 482 GLY SER ALA VAL TRP LYS VAL PHE SER GLN GLU PRO LEU SEQRES 31 A 482 THR LYS GLU GLN LEU ASN LEU LEU PHE ALA SER TYR ASP SEQRES 32 A 482 SER VAL LYS GLU LYS LYS TRP LEU ALA TYR PRO HIS TYR SEQRES 33 A 482 LYS PRO PRO GLU LYS CYS PRO PRO ILE ILE LEU HIS ASP SEQRES 34 A 482 ARG MET TYR TYR LEU ASN GLY ILE GLU TRP ALA ALA SER SEQRES 35 A 482 ALA MET GLU MET SER ALA ILE ALA ALA HIS ASN ALA ALA SEQRES 36 A 482 LEU LEU ALA TYR HIS ARG TRP TYR GLY ASN THR GLU MET SEQRES 37 A 482 ILE ASP GLN GLU GLY LEU TYR GLU LYS LEU LYS THR GLU SEQRES 38 A 482 LEU HET CPS A 601 22 HET FAD A 602 53 HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN CPS CHAPS FORMUL 2 CPS C32 H58 N2 O7 S FORMUL 3 FAD C27 H33 N9 O15 P2 HELIX 1 AA1 GLY A 39 GLY A 54 1 16 HELIX 2 AA2 GLY A 68 LEU A 71 5 4 HELIX 3 AA3 ASN A 92 LEU A 102 1 11 HELIX 4 AA4 TRP A 129 GLY A 142 1 14 HELIX 5 AA5 PHE A 143 MET A 160 1 18 HELIX 6 AA6 MET A 160 HIS A 168 1 9 HELIX 7 AA7 SER A 174 GLY A 184 1 11 HELIX 8 AA8 GLY A 184 ARG A 193 1 10 HELIX 9 AA9 THR A 194 ALA A 202 1 9 HELIX 10 AB1 SER A 205 ILE A 212 1 8 HELIX 11 AB2 ILE A 212 GLY A 222 1 11 HELIX 12 AB3 ASN A 228 GLY A 238 1 11 HELIX 13 AB4 ASN A 250 LYS A 262 1 13 HELIX 14 AB5 ALA A 350 GLY A 354 5 5 HELIX 15 AB6 THR A 411 LEU A 418 1 8 HELIX 16 AB7 ASN A 455 ALA A 460 5 6 HELIX 17 AB8 ALA A 463 GLY A 484 1 22 HELIX 18 AB9 ASN A 485 ILE A 489 5 5 HELIX 19 AC1 GLY A 493 LYS A 499 1 7 SHEET 1 AA1 6 ARG A 264 SER A 267 0 SHEET 2 AA1 6 GLN A 58 GLU A 63 1 N ILE A 59 O ARG A 264 SHEET 3 AA1 6 LYS A 32 ILE A 36 1 N VAL A 35 O ASP A 60 SHEET 4 AA1 6 ILE A 306 VAL A 309 1 O VAL A 308 N ILE A 36 SHEET 5 AA1 6 MET A 451 TYR A 453 1 O TYR A 452 N VAL A 309 SHEET 6 AA1 6 ILE A 446 HIS A 448 -1 N LEU A 447 O MET A 451 SHEET 1 AA2 2 THR A 73 VAL A 76 0 SHEET 2 AA2 2 GLN A 79 GLU A 82 -1 O GLN A 79 N VAL A 76 SHEET 1 AA3 7 PHE A 122 GLU A 125 0 SHEET 2 AA3 7 MET A 114 TYR A 117 -1 N ILE A 116 O PHE A 124 SHEET 3 AA3 7 ASP A 365 THR A 368 1 O LEU A 367 N TYR A 117 SHEET 4 AA3 7 ILE A 376 VAL A 381 -1 O ILE A 379 N ILE A 366 SHEET 5 AA3 7 VAL A 401 SER A 406 -1 O PHE A 405 N ASN A 377 SHEET 6 AA3 7 TYR A 336 LEU A 348 -1 N VAL A 340 O SER A 406 SHEET 7 AA3 7 PHE A 419 PRO A 434 -1 O LYS A 426 N PHE A 343 SHEET 1 AA4 4 GLY A 298 TYR A 304 0 SHEET 2 AA4 4 LYS A 287 THR A 295 -1 N TYR A 293 O ALA A 300 SHEET 3 AA4 4 SER A 269 THR A 277 -1 N GLU A 274 O GLU A 290 SHEET 4 AA4 4 THR A 321 LEU A 323 1 O THR A 321 N THR A 271 CISPEP 1 ASN A 326 PRO A 327 0 8.73 CRYST1 172.659 172.659 172.659 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005792 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005792 0.00000 CONECT 3656 3657 3667 CONECT 3657 3656 3666 3670 3674 CONECT 3658 3659 3674 CONECT 3659 3658 3660 3677 CONECT 3660 3659 3661 3664 3665 CONECT 3661 3660 3662 3673 CONECT 3662 3661 3663 CONECT 3663 3662 3664 CONECT 3664 3660 3663 CONECT 3665 3660 CONECT 3666 3657 CONECT 3667 3656 3668 CONECT 3668 3667 3669 3675 CONECT 3669 3668 3670 CONECT 3670 3657 3669 3671 CONECT 3671 3670 3672 CONECT 3672 3671 3673 3676 CONECT 3673 3661 3672 3674 CONECT 3674 3657 3658 3673 CONECT 3675 3668 CONECT 3676 3672 CONECT 3677 3659 CONECT 3678 3679 3680 3681 3730 CONECT 3679 3678 CONECT 3680 3678 CONECT 3681 3678 3682 CONECT 3682 3681 3683 CONECT 3683 3682 3684 3685 CONECT 3684 3683 3689 CONECT 3685 3683 3686 3687 CONECT 3686 3685 CONECT 3687 3685 3688 3689 CONECT 3688 3687 CONECT 3689 3684 3687 3690 CONECT 3690 3689 3691 3699 CONECT 3691 3690 3692 CONECT 3692 3691 3693 CONECT 3693 3692 3694 3699 CONECT 3694 3693 3695 3696 CONECT 3695 3694 CONECT 3696 3694 3697 CONECT 3697 3696 3698 CONECT 3698 3697 3699 CONECT 3699 3690 3693 3698 CONECT 3700 3701 3717 CONECT 3701 3700 3702 3703 CONECT 3702 3701 CONECT 3703 3701 3704 CONECT 3704 3703 3705 3706 CONECT 3705 3704 CONECT 3706 3704 3707 3717 CONECT 3707 3706 3708 CONECT 3708 3707 3709 3715 CONECT 3709 3708 3710 CONECT 3710 3709 3711 3712 CONECT 3711 3710 CONECT 3712 3710 3713 3714 CONECT 3713 3712 CONECT 3714 3712 3715 CONECT 3715 3708 3714 3716 CONECT 3716 3715 3717 3718 CONECT 3717 3700 3706 3716 CONECT 3718 3716 3719 CONECT 3719 3718 3720 3721 CONECT 3720 3719 CONECT 3721 3719 3722 3723 CONECT 3722 3721 CONECT 3723 3721 3724 3725 CONECT 3724 3723 CONECT 3725 3723 3726 CONECT 3726 3725 3727 CONECT 3727 3726 3728 3729 3730 CONECT 3728 3727 CONECT 3729 3727 CONECT 3730 3678 3727 MASTER 462 0 2 19 19 0 0 6 3729 1 75 38 END