HEADER STRUCTURAL PROTEIN 02-JUL-24 9FY6 TITLE SINGLE PARTICLE CRYO-EM RECONSTRUCTION OF BACILLUS METHANOLICUS TITLE 2 ENCAPSULIN NANO COMPARTMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS METHANOLICUS MGA3; SOURCE 3 ORGANISM_TAXID: 796606; SOURCE 4 GENE: BMMGA3_02020; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENCAPSULIN, NANOCOMPARTMENT, HK97, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.MARLES-WRIGHT,Z.MCIVER,A.BASLE,J.ROSS REVDAT 1 11-JUN-25 9FY6 0 JRNL AUTH J.MARLES-WRIGHT,Z.MCIVER,A.BASLE,J.ROSS JRNL TITL CRYO-EM STRUCTURE OF BACILLUS METHANOLICUS ENCAPSULIN NANO JRNL TITL 2 COMPARTMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.820 REMARK 3 NUMBER OF PARTICLES : 109840 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: HOMOGENOUS REFINEMENT WITH EWALD SPHERE CORRECTION REMARK 4 REMARK 4 9FY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139839. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENCAPSULIN NANO COMPARTMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 9558 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 190000 REMARK 245 CALIBRATED MAGNIFICATION : 190000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 240-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309000 0.809000 0.500000 -237.62840 REMARK 350 BIOMT2 2 -0.809000 0.500000 -0.309000 622.14060 REMARK 350 BIOMT3 2 -0.500000 -0.309000 0.809000 384.51190 REMARK 350 BIOMT1 3 -0.809000 0.500000 0.309000 384.51220 REMARK 350 BIOMT2 3 -0.500000 -0.309000 -0.809000 1006.65240 REMARK 350 BIOMT3 3 -0.309000 -0.809000 0.500000 622.14070 REMARK 350 BIOMT1 4 -0.809000 -0.500000 -0.309000 1006.65260 REMARK 350 BIOMT2 4 0.500000 -0.309000 -0.809000 622.14000 REMARK 350 BIOMT3 4 0.309000 -0.809000 0.500000 384.51260 REMARK 350 BIOMT1 5 0.309000 -0.809000 -0.500000 769.02410 REMARK 350 BIOMT2 5 0.809000 0.500000 -0.309000 -0.00040 REMARK 350 BIOMT3 5 0.500000 -0.309000 0.809000 0.00040 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 769.02400 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 769.02400 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309000 -0.809000 0.500000 622.14070 REMARK 350 BIOMT2 7 0.809000 -0.500000 -0.309000 384.51240 REMARK 350 BIOMT3 7 0.500000 0.309000 0.809000 -237.62830 REMARK 350 BIOMT1 8 0.809000 -0.500000 0.309000 146.88430 REMARK 350 BIOMT2 8 0.500000 0.309000 -0.809000 384.51240 REMARK 350 BIOMT3 8 0.309000 0.809000 0.500000 -237.62870 REMARK 350 BIOMT1 9 0.809000 0.500000 -0.309000 0.00070 REMARK 350 BIOMT2 9 -0.500000 0.309000 -0.809000 769.02410 REMARK 350 BIOMT3 9 -0.309000 0.809000 0.500000 -0.00060 REMARK 350 BIOMT1 10 -0.309000 0.809000 -0.500000 384.51230 REMARK 350 BIOMT2 10 -0.809000 -0.500000 -0.309000 1006.65230 REMARK 350 BIOMT3 10 -0.500000 0.309000 0.809000 146.88320 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 769.02300 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 -0.00100 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 769.02400 REMARK 350 BIOMT1 12 -0.309000 0.809000 -0.500000 384.51060 REMARK 350 BIOMT2 12 0.809000 0.500000 0.309000 -237.62830 REMARK 350 BIOMT3 12 0.500000 -0.309000 -0.809000 622.14090 REMARK 350 BIOMT1 13 0.809000 0.500000 -0.309000 -0.00040 REMARK 350 BIOMT2 13 0.500000 -0.309000 0.809000 0.00090 REMARK 350 BIOMT3 13 0.309000 -0.809000 -0.500000 769.02460 REMARK 350 BIOMT1 14 0.809000 -0.500000 0.309000 146.88430 REMARK 350 BIOMT2 14 -0.500000 -0.309000 0.809000 384.51220 REMARK 350 BIOMT3 14 -0.309000 -0.809000 -0.500000 1006.65270 REMARK 350 BIOMT1 15 -0.309000 -0.809000 0.500000 622.14070 REMARK 350 BIOMT2 15 -0.809000 0.500000 0.309000 384.51100 REMARK 350 BIOMT3 15 -0.500000 -0.309000 -0.809000 1006.65240 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00100 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 769.02510 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 769.02400 REMARK 350 BIOMT1 17 0.309000 -0.809000 -0.500000 769.02510 REMARK 350 BIOMT2 17 -0.809000 -0.500000 0.309000 769.02340 REMARK 350 BIOMT3 17 -0.500000 0.309000 -0.809000 769.02360 REMARK 350 BIOMT1 18 -0.809000 -0.500000 -0.309000 1006.65200 REMARK 350 BIOMT2 18 -0.500000 0.309000 0.809000 146.88240 REMARK 350 BIOMT3 18 -0.309000 0.809000 -0.500000 384.51150 REMARK 350 BIOMT1 19 -0.809000 0.500000 0.309000 384.51050 REMARK 350 BIOMT2 19 0.500000 0.309000 0.809000 -237.62830 REMARK 350 BIOMT3 19 0.309000 0.809000 -0.500000 146.88330 REMARK 350 BIOMT1 20 0.309000 0.809000 0.500000 -237.62900 REMARK 350 BIOMT2 20 0.809000 -0.500000 0.309000 146.88510 REMARK 350 BIOMT3 20 0.500000 0.309000 -0.809000 384.51210 REMARK 350 BIOMT1 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 769.02460 REMARK 350 BIOMT3 21 -1.000000 0.000000 0.000000 769.02350 REMARK 350 BIOMT1 22 -0.500000 0.309000 -0.809000 769.02410 REMARK 350 BIOMT2 22 0.309000 -0.809000 -0.500000 769.02410 REMARK 350 BIOMT3 22 -0.809000 -0.500000 0.309000 769.02390 REMARK 350 BIOMT1 23 -0.309000 -0.809000 -0.500000 1006.65240 REMARK 350 BIOMT2 23 0.809000 -0.500000 0.309000 146.88340 REMARK 350 BIOMT3 23 -0.500000 -0.309000 0.809000 384.51190 REMARK 350 BIOMT1 24 0.309000 -0.809000 0.500000 384.51180 REMARK 350 BIOMT2 24 0.809000 0.500000 0.309000 -237.62830 REMARK 350 BIOMT3 24 -0.500000 0.309000 0.809000 146.88320 REMARK 350 BIOMT1 25 0.500000 0.309000 0.809000 -237.62860 REMARK 350 BIOMT2 25 0.309000 0.809000 -0.500000 146.88420 REMARK 350 BIOMT3 25 -0.809000 0.500000 0.309000 384.51140 REMARK 350 BIOMT1 26 0.000000 -1.000000 0.000000 769.02400 REMARK 350 BIOMT2 26 0.000000 0.000000 1.000000 -0.00050 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 769.02350 REMARK 350 BIOMT1 27 -0.500000 -0.309000 0.809000 384.51110 REMARK 350 BIOMT2 27 0.309000 0.809000 0.500000 -237.62870 REMARK 350 BIOMT3 27 -0.809000 0.500000 -0.309000 622.13980 REMARK 350 BIOMT1 28 -0.309000 0.809000 0.500000 -0.00110 REMARK 350 BIOMT2 28 0.809000 0.500000 -0.309000 0.00070 REMARK 350 BIOMT3 28 -0.500000 0.309000 -0.809000 769.02360 REMARK 350 BIOMT1 29 0.309000 0.809000 -0.500000 146.88330 REMARK 350 BIOMT2 29 0.809000 -0.500000 -0.309000 384.51300 REMARK 350 BIOMT3 29 -0.500000 -0.309000 -0.809000 1006.65240 REMARK 350 BIOMT1 30 0.500000 -0.309000 -0.809000 622.14090 REMARK 350 BIOMT2 30 0.309000 -0.809000 0.500000 384.51230 REMARK 350 BIOMT3 30 -0.809000 -0.500000 -0.309000 1006.65230 REMARK 350 BIOMT1 31 0.000000 -1.000000 0.000000 769.02510 REMARK 350 BIOMT2 31 0.000000 0.000000 -1.000000 769.02350 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00050 REMARK 350 BIOMT1 32 0.500000 -0.309000 -0.809000 622.14090 REMARK 350 BIOMT2 32 -0.309000 0.809000 -0.500000 384.51110 REMARK 350 BIOMT3 32 0.809000 0.500000 0.309000 -237.62830 REMARK 350 BIOMT1 33 0.309000 0.809000 -0.500000 146.88330 REMARK 350 BIOMT2 33 -0.809000 0.500000 0.309000 384.51170 REMARK 350 BIOMT3 33 0.500000 0.309000 0.809000 -237.62830 REMARK 350 BIOMT1 34 -0.309000 0.809000 0.500000 -0.00010 REMARK 350 BIOMT2 34 -0.809000 -0.500000 0.309000 769.02440 REMARK 350 BIOMT3 34 0.500000 -0.309000 0.809000 0.00040 REMARK 350 BIOMT1 35 -0.500000 -0.309000 0.809000 384.51280 REMARK 350 BIOMT2 35 -0.309000 -0.809000 -0.500000 1006.65270 REMARK 350 BIOMT3 35 0.809000 -0.500000 0.309000 146.88430 REMARK 350 BIOMT1 36 0.000000 1.000000 0.000000 -0.00100 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00050 REMARK 350 BIOMT3 36 1.000000 0.000000 0.000000 0.00050 REMARK 350 BIOMT1 37 0.500000 0.309000 0.809000 -237.62800 REMARK 350 BIOMT2 37 -0.309000 -0.809000 0.500000 622.14150 REMARK 350 BIOMT3 37 0.809000 -0.500000 -0.309000 384.51270 REMARK 350 BIOMT1 38 0.309000 -0.809000 0.500000 384.51340 REMARK 350 BIOMT2 38 -0.809000 -0.500000 -0.309000 1006.65230 REMARK 350 BIOMT3 38 0.500000 -0.309000 -0.809000 622.14090 REMARK 350 BIOMT1 39 -0.309000 -0.809000 -0.500000 1006.65300 REMARK 350 BIOMT2 39 -0.809000 0.500000 -0.309000 622.13900 REMARK 350 BIOMT3 39 0.500000 0.309000 -0.809000 384.51210 REMARK 350 BIOMT1 40 -0.500000 0.309000 -0.809000 769.02310 REMARK 350 BIOMT2 40 -0.309000 0.809000 0.500000 -0.00110 REMARK 350 BIOMT3 40 0.809000 0.500000 -0.309000 0.00020 REMARK 350 BIOMT1 41 0.000000 0.000000 -1.000000 769.02350 REMARK 350 BIOMT2 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 769.02460 REMARK 350 BIOMT1 42 0.809000 -0.500000 -0.309000 384.51190 REMARK 350 BIOMT2 42 0.500000 0.309000 0.809000 -237.62830 REMARK 350 BIOMT3 42 -0.309000 -0.809000 0.500000 622.14070 REMARK 350 BIOMT1 43 0.500000 -0.309000 0.809000 -0.00010 REMARK 350 BIOMT2 43 -0.309000 0.809000 0.500000 -0.00010 REMARK 350 BIOMT3 43 -0.809000 -0.500000 0.309000 769.02390 REMARK 350 BIOMT1 44 -0.500000 0.309000 0.809000 146.88320 REMARK 350 BIOMT2 44 -0.309000 0.809000 -0.500000 384.51180 REMARK 350 BIOMT3 44 -0.809000 -0.500000 -0.309000 1006.65230 REMARK 350 BIOMT1 45 -0.809000 0.500000 -0.309000 622.13980 REMARK 350 BIOMT2 45 0.500000 0.309000 -0.809000 384.51180 REMARK 350 BIOMT3 45 -0.309000 -0.809000 -0.500000 1006.65270 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00050 REMARK 350 BIOMT2 46 -1.000000 0.000000 0.000000 769.02400 REMARK 350 BIOMT3 46 0.000000 -1.000000 0.000000 769.02460 REMARK 350 BIOMT1 47 -0.809000 -0.500000 0.309000 769.02440 REMARK 350 BIOMT2 47 -0.500000 0.309000 -0.809000 769.02310 REMARK 350 BIOMT3 47 0.309000 -0.809000 -0.500000 769.02460 REMARK 350 BIOMT1 48 -0.500000 -0.309000 -0.809000 1006.65210 REMARK 350 BIOMT2 48 0.309000 0.809000 -0.500000 146.88250 REMARK 350 BIOMT3 48 0.809000 -0.500000 -0.309000 384.51270 REMARK 350 BIOMT1 49 0.500000 0.309000 -0.809000 384.51130 REMARK 350 BIOMT2 49 0.309000 0.809000 0.500000 -237.62870 REMARK 350 BIOMT3 49 0.809000 -0.500000 0.309000 146.88430 REMARK 350 BIOMT1 50 0.809000 0.500000 0.309000 -237.62860 REMARK 350 BIOMT2 50 -0.500000 0.309000 0.809000 146.88400 REMARK 350 BIOMT3 50 0.309000 -0.809000 0.500000 384.51260 REMARK 350 BIOMT1 51 0.000000 0.000000 1.000000 -0.00050 REMARK 350 BIOMT2 51 1.000000 0.000000 0.000000 0.00100 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 -0.00050 REMARK 350 BIOMT1 52 0.809000 0.500000 0.309000 -237.62800 REMARK 350 BIOMT2 52 0.500000 -0.309000 -0.809000 622.14170 REMARK 350 BIOMT3 52 -0.309000 0.809000 -0.500000 384.51150 REMARK 350 BIOMT1 53 0.500000 0.309000 -0.809000 384.51290 REMARK 350 BIOMT2 53 -0.309000 -0.809000 -0.500000 1006.65270 REMARK 350 BIOMT3 53 -0.809000 0.500000 -0.309000 622.13980 REMARK 350 BIOMT1 54 -0.500000 -0.309000 -0.809000 1006.65270 REMARK 350 BIOMT2 54 -0.309000 -0.809000 0.500000 622.13990 REMARK 350 BIOMT3 54 -0.809000 0.500000 0.309000 384.51140 REMARK 350 BIOMT1 55 -0.809000 -0.500000 0.309000 769.02340 REMARK 350 BIOMT2 55 0.500000 -0.309000 0.809000 -0.00010 REMARK 350 BIOMT3 55 -0.309000 0.809000 0.500000 -0.00060 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 769.02460 REMARK 350 BIOMT2 56 -1.000000 0.000000 0.000000 769.02300 REMARK 350 BIOMT3 56 0.000000 1.000000 0.000000 -0.00050 REMARK 350 BIOMT1 57 -0.809000 0.500000 -0.309000 622.13980 REMARK 350 BIOMT2 57 -0.500000 -0.309000 0.809000 384.51160 REMARK 350 BIOMT3 57 0.309000 0.809000 0.500000 -237.62870 REMARK 350 BIOMT1 58 -0.500000 0.309000 0.809000 146.88320 REMARK 350 BIOMT2 58 0.309000 -0.809000 0.500000 384.51290 REMARK 350 BIOMT3 58 0.809000 0.500000 0.309000 -237.62830 REMARK 350 BIOMT1 59 0.500000 -0.309000 0.809000 0.00090 REMARK 350 BIOMT2 59 0.309000 -0.809000 -0.500000 769.02510 REMARK 350 BIOMT3 59 0.809000 0.500000 -0.309000 0.00020 REMARK 350 BIOMT1 60 0.809000 -0.500000 -0.309000 384.51350 REMARK 350 BIOMT2 60 -0.500000 -0.309000 -0.809000 1006.65240 REMARK 350 BIOMT3 60 0.309000 0.809000 -0.500000 146.88330 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 280 REMARK 465 GLY A 281 REMARK 465 GLU A 282 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 280 REMARK 465 GLY B 281 REMARK 465 GLU B 282 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 THR C 4 REMARK 465 GLN C 5 REMARK 465 LEU C 6 REMARK 465 PHE C 7 REMARK 465 PRO C 8 REMARK 465 ASP C 9 REMARK 465 GLU C 58 REMARK 465 ASN C 59 REMARK 465 TYR C 60 REMARK 465 GLU C 61 REMARK 465 ALA C 62 REMARK 465 LYS C 63 REMARK 465 MET C 64 REMARK 465 ASP C 65 REMARK 465 PHE C 66 REMARK 465 GLN C 67 REMARK 465 GLY C 68 REMARK 465 SER C 69 REMARK 465 PHE C 70 REMARK 465 ASP C 71 REMARK 465 THR C 72 REMARK 465 ASP C 73 REMARK 465 ILE C 74 REMARK 465 GLU C 75 REMARK 465 THR C 76 REMARK 465 GLY C 280 REMARK 465 GLY C 281 REMARK 465 GLU C 282 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 LYS D 3 REMARK 465 THR D 4 REMARK 465 GLN D 5 REMARK 465 LEU D 6 REMARK 465 PHE D 7 REMARK 465 PRO D 8 REMARK 465 ASP D 9 REMARK 465 ASN D 59 REMARK 465 TYR D 60 REMARK 465 GLU D 61 REMARK 465 ALA D 62 REMARK 465 LYS D 63 REMARK 465 MET D 64 REMARK 465 ASP D 65 REMARK 465 PHE D 66 REMARK 465 GLN D 67 REMARK 465 GLY D 68 REMARK 465 SER D 69 REMARK 465 PHE D 70 REMARK 465 ASP D 71 REMARK 465 THR D 72 REMARK 465 ASP D 73 REMARK 465 ILE D 74 REMARK 465 GLU D 75 REMARK 465 GLY D 280 REMARK 465 GLY D 281 REMARK 465 GLU D 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 31.47 -97.29 REMARK 500 HIS A 193 33.50 -99.36 REMARK 500 ASP A 243 -168.80 -79.06 REMARK 500 THR B 4 -4.39 67.80 REMARK 500 TYR B 41 50.72 -92.00 REMARK 500 ASP B 243 -168.63 -78.77 REMARK 500 TYR C 41 50.43 -91.53 REMARK 500 ASP C 198 -3.21 69.30 REMARK 500 TYR D 41 50.02 -91.70 REMARK 500 GLU D 173 48.46 -82.65 REMARK 500 MET D 174 21.61 -141.97 REMARK 500 HIS D 193 32.51 -95.77 REMARK 500 ASP D 243 -169.24 -79.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-50859 RELATED DB: EMDB REMARK 900 SINGLE PARTICLE CRYO-EM RECONSTRUCTION OF BACILLUS METHANOLICUS REMARK 900 ENCAPSULIN NANO COMPARTMENT DBREF 9FY6 A 1 282 UNP I3E3I1 I3E3I1_BACMM 1 282 DBREF 9FY6 B 1 282 UNP I3E3I1 I3E3I1_BACMM 1 282 DBREF 9FY6 C 1 282 UNP I3E3I1 I3E3I1_BACMM 1 282 DBREF 9FY6 D 1 282 UNP I3E3I1 I3E3I1_BACMM 1 282 SEQRES 1 A 282 MET GLY LYS THR GLN LEU PHE PRO ASP SER PRO LEU THR SEQRES 2 A 282 ASP GLN ASP PHE SER GLN LEU ASP GLN THR VAL ILE ASP SEQRES 3 A 282 THR ALA ARG ARG GLN LEU ILE GLY ARG ARG PHE ILE GLU SEQRES 4 A 282 LEU TYR GLY PRO LEU GLY ARG GLY ILE GLN SER ILE PHE SEQRES 5 A 282 ASN ASP VAL PHE ILE GLU ASN TYR GLU ALA LYS MET ASP SEQRES 6 A 282 PHE GLN GLY SER PHE ASP THR ASP ILE GLU THR SER LYS SEQRES 7 A 282 ARG VAL ASN TYR THR ILE PRO LEU LEU TYR LYS ASP PHE SEQRES 8 A 282 VAL LEU TYR TRP ARG ASP LEU GLU GLN ALA LYS VAL LEU SEQRES 9 A 282 ASP ILE PRO ILE ASP PHE SER ALA ALA ALA ASN ALA ALA SEQRES 10 A 282 ARG ASP VAL ALA ILE LEU GLU ASP GLN MET ILE PHE TYR SEQRES 11 A 282 GLY SER LYS GLU PHE ASP ILE PRO GLY LEU MET ASN VAL SEQRES 12 A 282 LYS GLY ARG SER THR HIS LEU ILE GLY ASN TRP TYR GLU SEQRES 13 A 282 SER GLY ASN ALA PHE GLN ASP VAL VAL GLU ALA ARG ASN SEQRES 14 A 282 LYS LEU LEU GLU MET LYS HIS ASN GLY PRO PHE ALA LEU SEQRES 15 A 282 VAL LEU SER PRO GLU LEU TYR SER LEU LEU HIS ARG VAL SEQRES 16 A 282 HIS LYS ASP THR ASN VAL LEU GLU ILE GLU HIS VAL ARG SEQRES 17 A 282 GLU LEU VAL THR ASP GLY VAL PHE GLN THR PRO VAL LEU SEQRES 18 A 282 LYS GLY LYS THR GLY VAL LEU VAL ASN THR GLY ARG ASN SEQRES 19 A 282 ASN LEU ASP LEU ALA VAL SER GLU ASP PHE ASP THR ALA SEQRES 20 A 282 TYR LEU GLY GLU GLU GLY MET ASN HIS PRO PHE ARG VAL SEQRES 21 A 282 TYR GLU THR VAL VAL LEU ARG ILE LYS ARG PRO SER ALA SEQRES 22 A 282 ILE CYS THR LEU GLU ASP GLY GLY GLU SEQRES 1 B 282 MET GLY LYS THR GLN LEU PHE PRO ASP SER PRO LEU THR SEQRES 2 B 282 ASP GLN ASP PHE SER GLN LEU ASP GLN THR VAL ILE ASP SEQRES 3 B 282 THR ALA ARG ARG GLN LEU ILE GLY ARG ARG PHE ILE GLU SEQRES 4 B 282 LEU TYR GLY PRO LEU GLY ARG GLY ILE GLN SER ILE PHE SEQRES 5 B 282 ASN ASP VAL PHE ILE GLU ASN TYR GLU ALA LYS MET ASP SEQRES 6 B 282 PHE GLN GLY SER PHE ASP THR ASP ILE GLU THR SER LYS SEQRES 7 B 282 ARG VAL ASN TYR THR ILE PRO LEU LEU TYR LYS ASP PHE SEQRES 8 B 282 VAL LEU TYR TRP ARG ASP LEU GLU GLN ALA LYS VAL LEU SEQRES 9 B 282 ASP ILE PRO ILE ASP PHE SER ALA ALA ALA ASN ALA ALA SEQRES 10 B 282 ARG ASP VAL ALA ILE LEU GLU ASP GLN MET ILE PHE TYR SEQRES 11 B 282 GLY SER LYS GLU PHE ASP ILE PRO GLY LEU MET ASN VAL SEQRES 12 B 282 LYS GLY ARG SER THR HIS LEU ILE GLY ASN TRP TYR GLU SEQRES 13 B 282 SER GLY ASN ALA PHE GLN ASP VAL VAL GLU ALA ARG ASN SEQRES 14 B 282 LYS LEU LEU GLU MET LYS HIS ASN GLY PRO PHE ALA LEU SEQRES 15 B 282 VAL LEU SER PRO GLU LEU TYR SER LEU LEU HIS ARG VAL SEQRES 16 B 282 HIS LYS ASP THR ASN VAL LEU GLU ILE GLU HIS VAL ARG SEQRES 17 B 282 GLU LEU VAL THR ASP GLY VAL PHE GLN THR PRO VAL LEU SEQRES 18 B 282 LYS GLY LYS THR GLY VAL LEU VAL ASN THR GLY ARG ASN SEQRES 19 B 282 ASN LEU ASP LEU ALA VAL SER GLU ASP PHE ASP THR ALA SEQRES 20 B 282 TYR LEU GLY GLU GLU GLY MET ASN HIS PRO PHE ARG VAL SEQRES 21 B 282 TYR GLU THR VAL VAL LEU ARG ILE LYS ARG PRO SER ALA SEQRES 22 B 282 ILE CYS THR LEU GLU ASP GLY GLY GLU SEQRES 1 C 282 MET GLY LYS THR GLN LEU PHE PRO ASP SER PRO LEU THR SEQRES 2 C 282 ASP GLN ASP PHE SER GLN LEU ASP GLN THR VAL ILE ASP SEQRES 3 C 282 THR ALA ARG ARG GLN LEU ILE GLY ARG ARG PHE ILE GLU SEQRES 4 C 282 LEU TYR GLY PRO LEU GLY ARG GLY ILE GLN SER ILE PHE SEQRES 5 C 282 ASN ASP VAL PHE ILE GLU ASN TYR GLU ALA LYS MET ASP SEQRES 6 C 282 PHE GLN GLY SER PHE ASP THR ASP ILE GLU THR SER LYS SEQRES 7 C 282 ARG VAL ASN TYR THR ILE PRO LEU LEU TYR LYS ASP PHE SEQRES 8 C 282 VAL LEU TYR TRP ARG ASP LEU GLU GLN ALA LYS VAL LEU SEQRES 9 C 282 ASP ILE PRO ILE ASP PHE SER ALA ALA ALA ASN ALA ALA SEQRES 10 C 282 ARG ASP VAL ALA ILE LEU GLU ASP GLN MET ILE PHE TYR SEQRES 11 C 282 GLY SER LYS GLU PHE ASP ILE PRO GLY LEU MET ASN VAL SEQRES 12 C 282 LYS GLY ARG SER THR HIS LEU ILE GLY ASN TRP TYR GLU SEQRES 13 C 282 SER GLY ASN ALA PHE GLN ASP VAL VAL GLU ALA ARG ASN SEQRES 14 C 282 LYS LEU LEU GLU MET LYS HIS ASN GLY PRO PHE ALA LEU SEQRES 15 C 282 VAL LEU SER PRO GLU LEU TYR SER LEU LEU HIS ARG VAL SEQRES 16 C 282 HIS LYS ASP THR ASN VAL LEU GLU ILE GLU HIS VAL ARG SEQRES 17 C 282 GLU LEU VAL THR ASP GLY VAL PHE GLN THR PRO VAL LEU SEQRES 18 C 282 LYS GLY LYS THR GLY VAL LEU VAL ASN THR GLY ARG ASN SEQRES 19 C 282 ASN LEU ASP LEU ALA VAL SER GLU ASP PHE ASP THR ALA SEQRES 20 C 282 TYR LEU GLY GLU GLU GLY MET ASN HIS PRO PHE ARG VAL SEQRES 21 C 282 TYR GLU THR VAL VAL LEU ARG ILE LYS ARG PRO SER ALA SEQRES 22 C 282 ILE CYS THR LEU GLU ASP GLY GLY GLU SEQRES 1 D 282 MET GLY LYS THR GLN LEU PHE PRO ASP SER PRO LEU THR SEQRES 2 D 282 ASP GLN ASP PHE SER GLN LEU ASP GLN THR VAL ILE ASP SEQRES 3 D 282 THR ALA ARG ARG GLN LEU ILE GLY ARG ARG PHE ILE GLU SEQRES 4 D 282 LEU TYR GLY PRO LEU GLY ARG GLY ILE GLN SER ILE PHE SEQRES 5 D 282 ASN ASP VAL PHE ILE GLU ASN TYR GLU ALA LYS MET ASP SEQRES 6 D 282 PHE GLN GLY SER PHE ASP THR ASP ILE GLU THR SER LYS SEQRES 7 D 282 ARG VAL ASN TYR THR ILE PRO LEU LEU TYR LYS ASP PHE SEQRES 8 D 282 VAL LEU TYR TRP ARG ASP LEU GLU GLN ALA LYS VAL LEU SEQRES 9 D 282 ASP ILE PRO ILE ASP PHE SER ALA ALA ALA ASN ALA ALA SEQRES 10 D 282 ARG ASP VAL ALA ILE LEU GLU ASP GLN MET ILE PHE TYR SEQRES 11 D 282 GLY SER LYS GLU PHE ASP ILE PRO GLY LEU MET ASN VAL SEQRES 12 D 282 LYS GLY ARG SER THR HIS LEU ILE GLY ASN TRP TYR GLU SEQRES 13 D 282 SER GLY ASN ALA PHE GLN ASP VAL VAL GLU ALA ARG ASN SEQRES 14 D 282 LYS LEU LEU GLU MET LYS HIS ASN GLY PRO PHE ALA LEU SEQRES 15 D 282 VAL LEU SER PRO GLU LEU TYR SER LEU LEU HIS ARG VAL SEQRES 16 D 282 HIS LYS ASP THR ASN VAL LEU GLU ILE GLU HIS VAL ARG SEQRES 17 D 282 GLU LEU VAL THR ASP GLY VAL PHE GLN THR PRO VAL LEU SEQRES 18 D 282 LYS GLY LYS THR GLY VAL LEU VAL ASN THR GLY ARG ASN SEQRES 19 D 282 ASN LEU ASP LEU ALA VAL SER GLU ASP PHE ASP THR ALA SEQRES 20 D 282 TYR LEU GLY GLU GLU GLY MET ASN HIS PRO PHE ARG VAL SEQRES 21 D 282 TYR GLU THR VAL VAL LEU ARG ILE LYS ARG PRO SER ALA SEQRES 22 D 282 ILE CYS THR LEU GLU ASP GLY GLY GLU HELIX 1 AA1 GLY A 2 PHE A 7 1 6 HELIX 2 AA2 THR A 13 ARG A 30 1 18 HELIX 3 AA3 ILE A 33 PHE A 37 5 5 HELIX 4 AA4 TYR A 94 ASP A 105 1 12 HELIX 5 AA5 SER A 111 GLY A 131 1 21 HELIX 6 AA6 GLY A 158 GLU A 173 1 16 HELIX 7 AA7 SER A 185 LEU A 192 1 8 HELIX 8 AA8 GLU A 203 VAL A 211 1 9 HELIX 9 AA9 ARG A 270 SER A 272 5 3 HELIX 10 AB1 THR B 13 LEU B 32 1 20 HELIX 11 AB2 ILE B 33 PHE B 37 5 5 HELIX 12 AB3 TYR B 94 ASP B 105 1 12 HELIX 13 AB4 SER B 111 GLY B 131 1 21 HELIX 14 AB5 GLY B 158 MET B 174 1 17 HELIX 15 AB6 SER B 185 HIS B 193 1 9 HELIX 16 AB7 LEU B 202 VAL B 211 1 10 HELIX 17 AB8 ARG B 270 SER B 272 5 3 HELIX 18 AB9 THR C 13 ARG C 30 1 18 HELIX 19 AC1 ILE C 33 PHE C 37 5 5 HELIX 20 AC2 TYR C 94 ASP C 105 1 12 HELIX 21 AC3 PHE C 110 GLY C 131 1 22 HELIX 22 AC4 GLY C 158 GLU C 173 1 16 HELIX 23 AC5 SER C 185 LEU C 192 1 8 HELIX 24 AC6 LEU C 202 ARG C 208 1 7 HELIX 25 AC7 ARG C 270 SER C 272 5 3 HELIX 26 AC8 THR D 13 LEU D 32 1 20 HELIX 27 AC9 ILE D 33 PHE D 37 5 5 HELIX 28 AD1 TYR D 94 ASP D 105 1 12 HELIX 29 AD2 SER D 111 GLY D 131 1 21 HELIX 30 AD3 GLY D 158 GLU D 173 1 16 HELIX 31 AD4 SER D 185 LEU D 192 1 8 HELIX 32 AD5 LEU D 202 VAL D 211 1 10 HELIX 33 AD6 ARG D 270 SER D 272 5 3 SHEET 1 AA1 4 LEU A 40 TYR A 41 0 SHEET 2 AA1 4 LEU A 236 TYR A 248 1 O LEU A 238 N TYR A 41 SHEET 3 AA1 4 HIS A 256 ILE A 268 -1 O ARG A 267 N ASP A 237 SHEET 4 AA1 4 LEU A 87 LEU A 93 -1 N PHE A 91 O PHE A 258 SHEET 1 AA2 2 SER A 50 PHE A 56 0 SHEET 2 AA2 2 SER A 77 THR A 83 -1 O TYR A 82 N ILE A 51 SHEET 1 AA3 5 LYS A 63 ASP A 65 0 SHEET 2 AA3 5 LEU C 86 LEU C 93 -1 O LEU C 86 N ASP A 65 SHEET 3 AA3 5 HIS C 256 ILE C 268 -1 O PHE C 258 N PHE C 91 SHEET 4 AA3 5 LEU C 236 TYR C 248 -1 N ASP C 237 O ARG C 267 SHEET 5 AA3 5 LEU C 40 PRO C 43 1 N TYR C 41 O LEU C 238 SHEET 1 AA4 5 SER A 147 LEU A 150 0 SHEET 2 AA4 5 ILE A 274 GLU A 278 1 O THR A 276 N HIS A 149 SHEET 3 AA4 5 THR A 225 ASN A 230 -1 N LEU A 228 O CYS A 275 SHEET 4 AA4 5 PHE A 180 LEU A 184 -1 N ALA A 181 O VAL A 229 SHEET 5 AA4 5 VAL A 215 GLN A 217 1 O PHE A 216 N LEU A 182 SHEET 1 AA5 2 VAL A 195 HIS A 196 0 SHEET 2 AA5 2 VAL A 201 LEU A 202 -1 O VAL A 201 N HIS A 196 SHEET 1 AA6 4 LEU B 40 PRO B 43 0 SHEET 2 AA6 4 LEU B 236 TYR B 248 1 O LEU B 238 N TYR B 41 SHEET 3 AA6 4 HIS B 256 ILE B 268 -1 O VAL B 265 N ALA B 239 SHEET 4 AA6 4 LEU B 87 LEU B 93 -1 N LYS B 89 O VAL B 260 SHEET 1 AA7 2 SER B 50 VAL B 55 0 SHEET 2 AA7 2 LYS B 78 THR B 83 -1 O TYR B 82 N ILE B 51 SHEET 1 AA8 5 SER B 147 LEU B 150 0 SHEET 2 AA8 5 ILE B 274 GLU B 278 1 O GLU B 278 N HIS B 149 SHEET 3 AA8 5 GLY B 226 ASN B 230 -1 N LEU B 228 O CYS B 275 SHEET 4 AA8 5 PHE B 180 LEU B 184 -1 N ALA B 181 O VAL B 229 SHEET 5 AA8 5 VAL B 215 GLN B 217 1 O PHE B 216 N LEU B 182 SHEET 1 AA9 2 SER C 50 VAL C 55 0 SHEET 2 AA9 2 LYS C 78 THR C 83 -1 O TYR C 82 N ILE C 51 SHEET 1 AB1 5 SER C 147 LEU C 150 0 SHEET 2 AB1 5 ILE C 274 GLU C 278 1 O THR C 276 N SER C 147 SHEET 3 AB1 5 GLY C 226 ASN C 230 -1 N LEU C 228 O CYS C 275 SHEET 4 AB1 5 PHE C 180 LEU C 184 -1 N VAL C 183 O VAL C 227 SHEET 5 AB1 5 VAL C 215 GLN C 217 1 O PHE C 216 N LEU C 182 SHEET 1 AB2 4 LEU D 40 PRO D 43 0 SHEET 2 AB2 4 LEU D 236 TYR D 248 1 O LEU D 238 N TYR D 41 SHEET 3 AB2 4 HIS D 256 ILE D 268 -1 O ARG D 267 N ASP D 237 SHEET 4 AB2 4 LEU D 87 LEU D 93 -1 N LYS D 89 O VAL D 260 SHEET 1 AB3 2 SER D 50 PHE D 56 0 SHEET 2 AB3 2 SER D 77 THR D 83 -1 O TYR D 82 N ILE D 51 SHEET 1 AB4 5 SER D 147 LEU D 150 0 SHEET 2 AB4 5 ILE D 274 GLU D 278 1 O ILE D 274 N SER D 147 SHEET 3 AB4 5 GLY D 226 ASN D 230 -1 N LEU D 228 O CYS D 275 SHEET 4 AB4 5 PHE D 180 LEU D 184 -1 N ALA D 181 O VAL D 229 SHEET 5 AB4 5 VAL D 215 GLN D 217 1 O PHE D 216 N LEU D 182 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 2234 ASP A 279 TER 4464 ASP B 279 TER 6479 ASP C 279 TER 8510 ASP D 279 MASTER 383 0 0 33 47 0 0 6 8506 4 0 88 END