HEADER MEMBRANE PROTEIN 05-JUL-24 9FZC TITLE STRUCTURE OF OMPA-SHORT IN COMPLEX WITH NANOBODY NB01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMPA,OUTER MEMBRANE PORIN A,OUTER MEMBRANE PROTEIN 3A,OUTER COMPND 5 MEMBRANE PROTEIN B,OUTER MEMBRANE PROTEIN II*,OUTER MEMBRANE PROTEIN COMPND 6 D; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NANOBODY 01; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: NB01; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: OMPA, CON, TOLG, TUT, B0957, JW0940; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MC1061; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 11 ORGANISM_TAXID: 30538; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: MC1061 KEYWDS PORIN, NANOBODY, COMPLEX, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.ACKLE,M.SORGENFREI,M.A.SEEGER REVDAT 1 17-JUL-24 9FZC 0 JRNL AUTH M.SORGENFREI,L.M.HURLIMANN,A.PRINTZ,F.WEGNER,D.MORGER, JRNL AUTH 2 F.ACKLE,M.M.REMY,G.MONTOWSKI,H.KESERUE,A.CUENOD,F.IMKAMP, JRNL AUTH 3 A.EGLI,P.M.KELLER,M.A.SEEGER JRNL TITL RAPID DETECTION AND CAPTURE OF CLINICAL ESCHERICHIA COLI JRNL TITL 2 STRAINS MEDIATED BY OMPA-TARGETING NANOBODIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1107.7900 - 5.0600 1.00 2735 144 0.2427 0.2648 REMARK 3 2 5.0600 - 4.0200 1.00 2656 139 0.1652 0.1702 REMARK 3 3 4.0100 - 3.5100 1.00 2666 141 0.1844 0.2184 REMARK 3 4 3.5100 - 3.1900 1.00 2651 140 0.1952 0.1976 REMARK 3 5 3.1900 - 2.9600 1.00 2626 138 0.2035 0.2318 REMARK 3 6 2.9600 - 2.7800 1.00 2632 139 0.2288 0.2692 REMARK 3 7 2.7800 - 2.6400 1.00 2626 138 0.2226 0.2808 REMARK 3 8 2.6400 - 2.5300 1.00 2615 138 0.2314 0.2795 REMARK 3 9 2.5300 - 2.4300 1.00 2643 139 0.2258 0.2603 REMARK 3 10 2.4300 - 2.3500 1.00 2641 139 0.2390 0.2935 REMARK 3 11 2.3500 - 2.2700 1.00 2603 136 0.2577 0.3123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.261 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4719 REMARK 3 ANGLE : 0.594 6346 REMARK 3 CHIRALITY : 0.045 644 REMARK 3 PLANARITY : 0.004 816 REMARK 3 DIHEDRAL : 13.724 1717 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 0 THROUGH 171) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4451 4.7151 45.6888 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1701 REMARK 3 T33: 0.2277 T12: -0.0039 REMARK 3 T13: -0.0054 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.6095 L22: 0.8157 REMARK 3 L33: 3.4245 L12: 0.0390 REMARK 3 L13: 0.3511 L23: 0.2832 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0283 S13: -0.0233 REMARK 3 S21: -0.0378 S22: 0.0158 S23: -0.0565 REMARK 3 S31: 0.0279 S32: 0.1485 S33: -0.0263 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 171) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5983 26.8080 45.7653 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.1513 REMARK 3 T33: 0.1997 T12: -0.0011 REMARK 3 T13: -0.0535 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.7890 L22: 0.7224 REMARK 3 L33: 2.4545 L12: 0.1367 REMARK 3 L13: -0.9206 L23: -0.4333 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.0945 S13: -0.0449 REMARK 3 S21: -0.0443 S22: 0.0062 S23: -0.0085 REMARK 3 S31: 0.0116 S32: -0.1298 S33: 0.0048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 5 THROUGH 121) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3874 -0.1987 2.5478 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.2662 REMARK 3 T33: 0.2105 T12: -0.0091 REMARK 3 T13: -0.0329 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.6309 L22: 2.1041 REMARK 3 L33: 1.8319 L12: -0.3429 REMARK 3 L13: 0.4194 L23: 0.8218 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.2618 S13: -0.2036 REMARK 3 S21: -0.1015 S22: 0.0104 S23: 0.1097 REMARK 3 S31: 0.1695 S32: -0.0671 S33: -0.0890 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 5 THROUGH 121) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3520 32.2609 3.0110 REMARK 3 T TENSOR REMARK 3 T11: 0.3524 T22: 0.2794 REMARK 3 T33: 0.2464 T12: -0.0150 REMARK 3 T13: -0.0126 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.1419 L22: 2.4679 REMARK 3 L33: 2.0846 L12: -0.1257 REMARK 3 L13: -1.0477 L23: -1.6376 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: 0.1734 S13: 0.1266 REMARK 3 S21: -0.1821 S22: -0.0802 S23: -0.1117 REMARK 3 S31: -0.1416 S32: -0.0775 S33: 0.1046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 0 through 171 or REMARK 3 resid 207 through 213)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9FZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 107.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.760 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.5, 0.2 M REMARK 280 CALCIUM ACETATE, 25 % PEG MME 2K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.64800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 MET B -1 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 SER C 3 REMARK 465 GLN C 4 REMARK 465 SER C 122 REMARK 465 ALA C 123 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 SER D 3 REMARK 465 GLN D 4 REMARK 465 SER D 122 REMARK 465 ALA D 123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 52 O HOH A 301 2.07 REMARK 500 OH TYR A 168 O HOH A 302 2.08 REMARK 500 O HOH B 367 O HOH B 377 2.16 REMARK 500 O HOH A 381 O HOH B 375 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 23 -67.55 -151.46 REMARK 500 VAL A 67 -82.79 -100.09 REMARK 500 ASN A 146 72.10 57.19 REMARK 500 PHE B 23 -67.06 -150.42 REMARK 500 VAL B 67 -84.05 -98.91 REMARK 500 ASN B 146 72.48 57.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 383 DISTANCE = 8.14 ANGSTROMS REMARK 525 HOH B 387 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH D 254 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 146 OD1 REMARK 620 2 ASP A 158 OD1 75.0 REMARK 620 3 ASP A 158 OD2 126.9 52.2 REMARK 620 4 HOH A 308 O 103.3 89.2 82.7 REMARK 620 5 HOH A 314 O 88.7 89.4 86.2 167.1 REMARK 620 6 HOH A 350 O 157.9 124.4 72.5 88.7 81.6 REMARK 620 7 HOH A 358 O 80.1 155.1 152.5 96.9 89.7 80.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 212 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 146 OD1 REMARK 620 2 ASP B 158 OD1 73.4 REMARK 620 3 ASP B 158 OD2 125.9 52.6 REMARK 620 4 HOH B 306 O 99.0 85.1 81.4 REMARK 620 5 HOH B 318 O 84.0 97.7 98.5 176.4 REMARK 620 6 HOH B 341 O 81.5 154.6 152.7 95.3 83.1 REMARK 620 7 HOH B 362 O 163.0 122.6 70.0 89.0 87.7 82.8 REMARK 620 N 1 2 3 4 5 6 DBREF 9FZC A 1 170 UNP P0A910 OMPA_ECOLI 22 191 DBREF 9FZC B 1 170 UNP P0A910 OMPA_ECOLI 22 191 DBREF 9FZC C 1 123 PDB 9FZC 9FZC 1 123 DBREF 9FZC D 1 123 PDB 9FZC 9FZC 1 123 SEQADV 9FZC MET A -1 UNP P0A910 INITIATING METHIONINE SEQADV 9FZC SER A 0 UNP P0A910 EXPRESSION TAG SEQADV 9FZC ALA A 171 UNP P0A910 EXPRESSION TAG SEQADV 9FZC MET B -1 UNP P0A910 INITIATING METHIONINE SEQADV 9FZC SER B 0 UNP P0A910 EXPRESSION TAG SEQADV 9FZC ALA B 171 UNP P0A910 EXPRESSION TAG SEQRES 1 A 173 MET SER ALA PRO LYS ASP ASN THR TRP TYR THR GLY ALA SEQRES 2 A 173 LYS LEU GLY TRP SER GLN TYR HIS ASP THR GLY PHE ILE SEQRES 3 A 173 ASN ASN ASN GLY PRO THR HIS GLU ASN GLN LEU GLY ALA SEQRES 4 A 173 GLY ALA PHE GLY GLY TYR GLN VAL ASN PRO TYR VAL GLY SEQRES 5 A 173 PHE GLU MET GLY TYR ASP TRP LEU GLY ARG MET PRO TYR SEQRES 6 A 173 LYS GLY SER VAL GLU ASN GLY ALA TYR LYS ALA GLN GLY SEQRES 7 A 173 VAL GLN LEU THR ALA LYS LEU GLY TYR PRO ILE THR ASP SEQRES 8 A 173 ASP LEU ASP ILE TYR THR ARG LEU GLY GLY MET VAL TRP SEQRES 9 A 173 ARG ALA ASP THR LYS SER ASN VAL TYR GLY LYS ASN HIS SEQRES 10 A 173 ASP THR GLY VAL SER PRO VAL PHE ALA GLY GLY VAL GLU SEQRES 11 A 173 TYR ALA ILE THR PRO GLU ILE ALA THR ARG LEU GLU TYR SEQRES 12 A 173 GLN TRP THR ASN ASN ILE GLY ASP ALA HIS THR ILE GLY SEQRES 13 A 173 THR ARG PRO ASP ASN GLY MET LEU SER LEU GLY VAL SER SEQRES 14 A 173 TYR ARG PHE ALA SEQRES 1 B 173 MET SER ALA PRO LYS ASP ASN THR TRP TYR THR GLY ALA SEQRES 2 B 173 LYS LEU GLY TRP SER GLN TYR HIS ASP THR GLY PHE ILE SEQRES 3 B 173 ASN ASN ASN GLY PRO THR HIS GLU ASN GLN LEU GLY ALA SEQRES 4 B 173 GLY ALA PHE GLY GLY TYR GLN VAL ASN PRO TYR VAL GLY SEQRES 5 B 173 PHE GLU MET GLY TYR ASP TRP LEU GLY ARG MET PRO TYR SEQRES 6 B 173 LYS GLY SER VAL GLU ASN GLY ALA TYR LYS ALA GLN GLY SEQRES 7 B 173 VAL GLN LEU THR ALA LYS LEU GLY TYR PRO ILE THR ASP SEQRES 8 B 173 ASP LEU ASP ILE TYR THR ARG LEU GLY GLY MET VAL TRP SEQRES 9 B 173 ARG ALA ASP THR LYS SER ASN VAL TYR GLY LYS ASN HIS SEQRES 10 B 173 ASP THR GLY VAL SER PRO VAL PHE ALA GLY GLY VAL GLU SEQRES 11 B 173 TYR ALA ILE THR PRO GLU ILE ALA THR ARG LEU GLU TYR SEQRES 12 B 173 GLN TRP THR ASN ASN ILE GLY ASP ALA HIS THR ILE GLY SEQRES 13 B 173 THR ARG PRO ASP ASN GLY MET LEU SER LEU GLY VAL SER SEQRES 14 B 173 TYR ARG PHE ALA SEQRES 1 C 123 GLY PRO SER GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 C 123 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS VAL SEQRES 3 C 123 VAL SER GLY THR GLY PHE THR PHE SER LYS SER PRO MET SEQRES 4 C 123 SER TRP ALA ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP SEQRES 5 C 123 VAL SER ALA ILE PHE ALA ASP SER SER THR TYR TYR SER SEQRES 6 C 123 ASP SER VAL ARG GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 C 123 ALA LYS ASN THR VAL TYR LEU GLN MET ASN ASN VAL LYS SEQRES 8 C 123 PRO GLU ASP THR ALA VAL TYR TYR CYS GLY HIS ARG ARG SEQRES 9 C 123 LEU GLY LYS THR THR TYR ASP TYR ARG GLY LYS GLY THR SEQRES 10 C 123 ARG VAL THR VAL SER ALA SEQRES 1 D 123 GLY PRO SER GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 D 123 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS VAL SEQRES 3 D 123 VAL SER GLY THR GLY PHE THR PHE SER LYS SER PRO MET SEQRES 4 D 123 SER TRP ALA ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP SEQRES 5 D 123 VAL SER ALA ILE PHE ALA ASP SER SER THR TYR TYR SER SEQRES 6 D 123 ASP SER VAL ARG GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 D 123 ALA LYS ASN THR VAL TYR LEU GLN MET ASN ASN VAL LYS SEQRES 8 D 123 PRO GLU ASP THR ALA VAL TYR TYR CYS GLY HIS ARG ARG SEQRES 9 D 123 LEU GLY LYS THR THR TYR ASP TYR ARG GLY LYS GLY THR SEQRES 10 D 123 ARG VAL THR VAL SER ALA HET OCT A 201 26 HET OCT A 202 26 HET OCT A 203 26 HET OCT A 204 26 HET OCT A 205 26 HET OCT A 206 26 HET CA A 207 1 HET OCT B 201 26 HET OCT B 202 26 HET OCT B 203 26 HET OCT B 204 26 HET OCT B 205 26 HET OCT B 206 26 HET OCT B 207 26 HET OCT B 208 26 HET OCT B 209 26 HET OCT B 210 26 HET OCT B 211 26 HET CA B 212 1 HETNAM OCT N-OCTANE HETNAM CA CALCIUM ION FORMUL 5 OCT 17(C8 H18) FORMUL 11 CA 2(CA 2+) FORMUL 24 HOH *276(H2 O) HELIX 1 AA1 THR C 33 SER C 37 5 5 HELIX 2 AA2 LYS C 91 THR C 95 5 5 HELIX 3 AA3 THR D 33 SER D 37 5 5 HELIX 4 AA4 LYS D 91 THR D 95 5 5 SHEET 1 AA1 9 THR A 6 HIS A 19 0 SHEET 2 AA1 9 ASN A 33 ASN A 46 -1 O GLN A 34 N SER A 16 SHEET 3 AA1 9 VAL A 49 TYR A 63 -1 O TRP A 57 N ALA A 37 SHEET 4 AA1 9 GLY A 70 PRO A 86 -1 O GLY A 70 N TYR A 63 SHEET 5 AA1 9 LEU A 91 SER A 108 -1 O LYS A 107 N ALA A 71 SHEET 6 AA1 9 GLY A 112 ALA A 130 -1 O SER A 120 N MET A 100 SHEET 7 AA1 9 ILE A 135 THR A 144 -1 O TRP A 143 N PHE A 123 SHEET 8 AA1 9 ASP A 158 ARG A 169 -1 O ASN A 159 N THR A 144 SHEET 9 AA1 9 THR A 6 HIS A 19 -1 N THR A 9 O TYR A 168 SHEET 1 AA2 9 THR B 6 HIS B 19 0 SHEET 2 AA2 9 ASN B 33 ASN B 46 -1 O GLY B 36 N GLY B 14 SHEET 3 AA2 9 VAL B 49 TYR B 63 -1 O TRP B 57 N ALA B 37 SHEET 4 AA2 9 GLY B 70 PRO B 86 -1 O TYR B 72 N MET B 61 SHEET 5 AA2 9 LEU B 91 SER B 108 -1 O ARG B 103 N GLN B 75 SHEET 6 AA2 9 GLY B 112 ALA B 130 -1 O ASN B 114 N THR B 106 SHEET 7 AA2 9 ILE B 135 THR B 144 -1 O TRP B 143 N PHE B 123 SHEET 8 AA2 9 ASP B 158 ARG B 169 -1 O SER B 167 N ALA B 136 SHEET 9 AA2 9 THR B 6 HIS B 19 -1 N THR B 9 O TYR B 168 SHEET 1 AA3 4 GLN C 6 SER C 10 0 SHEET 2 AA3 4 LEU C 21 SER C 28 -1 O SER C 28 N GLN C 6 SHEET 3 AA3 4 THR C 82 MET C 87 -1 O MET C 87 N LEU C 21 SHEET 4 AA3 4 PHE C 72 ASP C 77 -1 N SER C 75 O TYR C 84 SHEET 1 AA4 5 THR C 62 TYR C 64 0 SHEET 2 AA4 5 GLU C 51 ILE C 56 -1 N ALA C 55 O TYR C 63 SHEET 3 AA4 5 MET C 39 GLN C 44 -1 N ARG C 43 O GLU C 51 SHEET 4 AA4 5 ALA C 96 HIS C 102 -1 O TYR C 99 N ALA C 42 SHEET 5 AA4 5 THR C 117 VAL C 119 -1 O VAL C 119 N ALA C 96 SHEET 1 AA5 4 GLN D 6 SER D 10 0 SHEET 2 AA5 4 LEU D 21 SER D 28 -1 O SER D 28 N GLN D 6 SHEET 3 AA5 4 THR D 82 MET D 87 -1 O MET D 87 N LEU D 21 SHEET 4 AA5 4 PHE D 72 ASP D 77 -1 N SER D 75 O TYR D 84 SHEET 1 AA6 5 THR D 62 TYR D 64 0 SHEET 2 AA6 5 GLU D 51 ILE D 56 -1 N ALA D 55 O TYR D 63 SHEET 3 AA6 5 MET D 39 GLN D 44 -1 N ARG D 43 O GLU D 51 SHEET 4 AA6 5 ALA D 96 ARG D 103 -1 O TYR D 99 N ALA D 42 SHEET 5 AA6 5 TYR D 110 ASP D 111 -1 O ASP D 111 N HIS D 102 SHEET 1 AA7 5 THR D 62 TYR D 64 0 SHEET 2 AA7 5 GLU D 51 ILE D 56 -1 N ALA D 55 O TYR D 63 SHEET 3 AA7 5 MET D 39 GLN D 44 -1 N ARG D 43 O GLU D 51 SHEET 4 AA7 5 ALA D 96 ARG D 103 -1 O TYR D 99 N ALA D 42 SHEET 5 AA7 5 THR D 117 VAL D 119 -1 O VAL D 119 N ALA D 96 SSBOND 1 CYS C 25 CYS C 100 1555 1555 2.03 SSBOND 2 CYS D 25 CYS D 100 1555 1555 2.04 LINK OD1 ASN A 146 CA CA A 207 1555 1555 2.34 LINK OD1 ASP A 158 CA CA A 207 1555 1555 2.50 LINK OD2 ASP A 158 CA CA A 207 1555 1555 2.50 LINK CA CA A 207 O HOH A 308 1555 1555 2.55 LINK CA CA A 207 O HOH A 314 1555 1555 2.70 LINK CA CA A 207 O HOH A 350 1555 1555 2.44 LINK CA CA A 207 O HOH A 358 1555 2546 2.63 LINK OD1 ASN B 146 CA CA B 212 1555 1555 2.43 LINK OD1 ASP B 158 CA CA B 212 1555 1555 2.49 LINK OD2 ASP B 158 CA CA B 212 1555 1555 2.46 LINK CA CA B 212 O HOH B 306 1555 1555 2.50 LINK CA CA B 212 O HOH B 318 1555 1555 2.44 LINK CA CA B 212 O HOH B 341 1555 2656 2.52 LINK CA CA B 212 O HOH B 362 1555 1555 2.64 CRYST1 56.048 55.296 107.805 90.00 91.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017842 0.000000 0.000339 0.00000 SCALE2 0.000000 0.018084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009278 0.00000 MTRIX1 1 -0.999944 0.007315 -0.007701 26.46580 1 MTRIX2 1 -0.007265 -0.999952 -0.006520 32.07461 1 MTRIX3 1 -0.007748 -0.006464 0.999949 0.15724 1 MTRIX1 2 -0.993223 -0.083753 -0.080577 28.18439 1 MTRIX2 2 0.086612 -0.995707 -0.032654 32.52841 1 MTRIX3 2 -0.077496 -0.039411 0.996213 0.12439 1