HEADER HYDROLASE 08-JUL-24 9G0J TITLE STRUCTURE OF THE PRO-PRO ENDOPEPTIDASE (PPEP-3) FROM GEOBACILLUS TITLE 2 THERMODENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATLF-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS NG80-2; SOURCE 3 ORGANISM_TAXID: 420246; SOURCE 4 GENE: GTNG_1672; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS ENDOPEPTIDASE, METALLOPROTEASE, ZINC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.CLAUSHUIS,F.WOJTALLA,H.VAN LEEUWEN,J.CORVER,U.BAUMANN,P.HENSBERGEN REVDAT 3 18-FEB-26 9G0J 1 JRNL REVDAT 2 04-FEB-26 9G0J 1 JRNL REMARK REVDAT 1 16-JUL-25 9G0J 0 JRNL AUTH B.CLAUSHUIS,F.WOJTALLA,L.PAPENHAGEN,R.A.CORDFUNKE,A.H.DE RU, JRNL AUTH 2 H.C.VAN LEEUWEN,J.CORVER,P.J.HENSBERGEN,U.BAUMANN JRNL TITL STRUCTURAL ANALYSES AND SUBSTRATE PROFILING OF PPEP-3 JRNL TITL 2 PROVIDE NEW INSIGHTS INTO THE MOLECULAR BASIS OF PRO-PRO JRNL TITL 3 ENDOPEPTIDASE SPECIFICITY. JRNL REF ISCIENCE V. 29 14360 2026 JRNL REFN ESSN 2589-0042 JRNL PMID 41583563 JRNL DOI 10.1016/J.ISCI.2025.114360 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 143703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.460 REMARK 3 FREE R VALUE TEST SET COUNT : 4974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6400 - 4.8100 1.00 4635 162 0.1749 0.1905 REMARK 3 2 4.8100 - 3.8200 1.00 4619 157 0.1335 0.1562 REMARK 3 3 3.8200 - 3.3400 1.00 4637 167 0.1477 0.1836 REMARK 3 4 3.3400 - 3.0300 1.00 4644 165 0.1477 0.1557 REMARK 3 5 3.0300 - 2.8100 1.00 4621 168 0.1455 0.1652 REMARK 3 6 2.8100 - 2.6500 1.00 4603 167 0.1396 0.1833 REMARK 3 7 2.6500 - 2.5200 1.00 4659 170 0.1331 0.1652 REMARK 3 8 2.5200 - 2.4100 1.00 4616 167 0.1362 0.1494 REMARK 3 9 2.4100 - 2.3100 1.00 4627 161 0.1357 0.1848 REMARK 3 10 2.3100 - 2.2300 1.00 4642 161 0.1421 0.1672 REMARK 3 11 2.2300 - 2.1600 1.00 4630 169 0.1411 0.1444 REMARK 3 12 2.1600 - 2.1000 1.00 4611 169 0.1441 0.1702 REMARK 3 13 2.1000 - 2.0500 1.00 4619 167 0.1581 0.1960 REMARK 3 14 2.0500 - 2.0000 1.00 4591 162 0.1670 0.1856 REMARK 3 15 2.0000 - 1.9500 1.00 4670 167 0.1762 0.1871 REMARK 3 16 1.9500 - 1.9100 1.00 4633 172 0.1957 0.2330 REMARK 3 17 1.9100 - 1.8700 1.00 4606 161 0.2202 0.2947 REMARK 3 18 1.8700 - 1.8400 1.00 4646 161 0.2215 0.2012 REMARK 3 19 1.8400 - 1.8000 1.00 4617 170 0.2298 0.2679 REMARK 3 20 1.8000 - 1.7700 1.00 4589 170 0.2476 0.2858 REMARK 3 21 1.7700 - 1.7400 1.00 4631 158 0.2672 0.2921 REMARK 3 22 1.7400 - 1.7200 1.00 4684 167 0.2721 0.3318 REMARK 3 23 1.7200 - 1.6900 1.00 4595 170 0.2707 0.2839 REMARK 3 24 1.6900 - 1.6700 1.00 4648 161 0.2902 0.3026 REMARK 3 25 1.6700 - 1.6500 1.00 4606 171 0.3007 0.3052 REMARK 3 26 1.6500 - 1.6200 1.00 4614 165 0.3135 0.3436 REMARK 3 27 1.6200 - 1.6000 1.00 4600 174 0.3255 0.3124 REMARK 3 28 1.6000 - 1.5900 1.00 4684 166 0.3357 0.3913 REMARK 3 29 1.5900 - 1.5700 1.00 4593 168 0.3311 0.3906 REMARK 3 30 1.5700 - 1.5500 0.98 4559 161 0.3552 0.3695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3578 REMARK 3 ANGLE : 0.974 4850 REMARK 3 CHIRALITY : 0.057 517 REMARK 3 PLANARITY : 0.010 632 REMARK 3 DIHEDRAL : 14.295 1324 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 21 THROUGH 235) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5427 17.9398 5.6911 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1195 REMARK 3 T33: 0.1466 T12: -0.0147 REMARK 3 T13: -0.0117 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.7213 L22: 0.6271 REMARK 3 L33: 1.0134 L12: -0.0547 REMARK 3 L13: -0.0148 L23: -0.1058 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0363 S13: 0.0115 REMARK 3 S21: -0.0358 S22: 0.0006 S23: 0.0480 REMARK 3 S31: 0.0239 S32: -0.1055 S33: -0.0083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 29 THROUGH 234) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6833 -12.0551 18.7585 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.1073 REMARK 3 T33: 0.1152 T12: 0.0140 REMARK 3 T13: -0.0207 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.2203 L22: 1.4876 REMARK 3 L33: 0.8172 L12: 0.4331 REMARK 3 L13: 0.1819 L23: -0.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.0328 S13: 0.0084 REMARK 3 S21: 0.0290 S22: -0.0544 S23: -0.0250 REMARK 3 S31: -0.0423 S32: -0.0018 S33: 0.0047 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9G0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292139889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUN 30, 2023 BUILT=20230630 REMARK 200 DATA SCALING SOFTWARE : XSCALE JUN 30, 2023 REMARK 200 BUILT=20230630 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 44.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.23200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.21_5207 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M ETHYLENE GLYCOLS 0.1 M TRIS REMARK 280 -BICINE PH 8.5 30 % P550MME_P20K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.02150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.12350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.12350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.01075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.12350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.12350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.03225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.12350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.12350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.01075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.12350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.12350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.03225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.02150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 926 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 830 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 LEU A 19 REMARK 465 VAL A 20 REMARK 465 MET B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 LEU B 19 REMARK 465 VAL B 20 REMARK 465 PRO B 21 REMARK 465 ARG B 22 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 HIS B 25 REMARK 465 MET B 26 REMARK 465 ALA B 27 REMARK 465 HIS B 28 REMARK 465 SER B 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 124.72 -38.94 REMARK 500 LYS A 118 140.19 -172.50 REMARK 500 LYS B 118 144.00 -171.23 REMARK 500 ARG B 233 -70.37 149.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 HIS A 157 NE2 92.5 REMARK 620 3 GLU A 197 OE1 96.4 93.1 REMARK 620 4 BCN A 702 O6 92.6 174.7 87.5 REMARK 620 5 BCN A 702 O22 96.4 94.6 164.8 83.6 REMARK 620 6 BCN A 702 N1 170.3 95.6 88.3 79.1 77.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 153 NE2 REMARK 620 2 HIS B 157 NE2 91.6 REMARK 620 3 GLU B 197 OE1 98.3 90.9 REMARK 620 4 BCN B 702 N1 170.4 96.6 86.6 REMARK 620 5 BCN B 702 O6 94.4 173.9 87.2 77.5 REMARK 620 6 BCN B 702 O22 96.6 91.4 164.9 78.3 88.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9G3T RELATED DB: PDB REMARK 900 DOUBLE MUTANT REMARK 900 RELATED ID: 9G5J RELATED DB: PDB REMARK 900 SUBSTRATE COMPLEX DBREF 9G0J A 27 235 UNP A4INY2 A4INY2_GEOTN 27 235 DBREF 9G0J B 27 235 UNP A4INY2 A4INY2_GEOTN 27 235 SEQADV 9G0J MET A 6 UNP A4INY2 INITIATING METHIONINE SEQADV 9G0J GLY A 7 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER A 8 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER A 9 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS A 10 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS A 11 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS A 12 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS A 13 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS A 14 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS A 15 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER A 16 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER A 17 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J GLY A 18 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J LEU A 19 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J VAL A 20 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J PRO A 21 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J ARG A 22 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J GLY A 23 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER A 24 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS A 25 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J MET A 26 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J MET B 6 UNP A4INY2 INITIATING METHIONINE SEQADV 9G0J GLY B 7 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER B 8 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER B 9 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS B 10 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS B 11 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS B 12 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS B 13 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS B 14 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS B 15 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER B 16 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER B 17 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J GLY B 18 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J LEU B 19 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J VAL B 20 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J PRO B 21 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J ARG B 22 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J GLY B 23 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J SER B 24 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J HIS B 25 UNP A4INY2 EXPRESSION TAG SEQADV 9G0J MET B 26 UNP A4INY2 EXPRESSION TAG SEQRES 1 A 230 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 230 LEU VAL PRO ARG GLY SER HIS MET ALA HIS GLY VAL LEU SEQRES 3 A 230 LEU GLU GLU SER GLY LEU ASP VAL GLN THR ILE PRO SER SEQRES 4 A 230 HIS ASP VAL LEU GLY ARG ILE VAL ILE VAL PRO GLU THR SEQRES 5 A 230 ASP PHE SER PHE ASP GLU ALA ASN GLU THR ILE ARG THR SEQRES 6 A 230 LEU ALA ARG ILE ASP ARG ARG ILE LEU GLU GLN ALA ALA SEQRES 7 A 230 ASN HIS HIS ILE TYR ILE GLN LEU LEU THR ASN PRO ILE SEQRES 8 A 230 THR ASP GLU PRO ILE ALA ARG HIS LEU ARG GLY LYS THR SEQRES 9 A 230 PRO ARG GLY TYR VAL PRO GLY SER LYS THR TRP ASP GLU SEQRES 10 A 230 VAL PRO GLY ILE GLY GLY ALA HIS LEU VAL LEU VAL ARG SEQRES 11 A 230 LEU GLY HIS SER GLU LYS GLY LYS GLY HIS GLY SER ILE SEQRES 12 A 230 ASN LEU GLU LEU HIS GLU PHE ALA HIS SER LEU ASP TYR SEQRES 13 A 230 ILE VAL PHE ASP HIS ILE HIS GLU THR ASP GLU PHE GLN SEQRES 14 A 230 ALA LEU TRP ARG GLU GLU ALA PRO GLN LEU PHE PRO ARG SEQRES 15 A 230 GLU TYR TYR PHE LEU THR TYR PRO GLU GLU TYR PHE ALA SEQRES 16 A 230 GLU SER PHE ALA TYR TYR TYR VAL SER GLU LYS THR GLN SEQRES 17 A 230 GLU THR LEU ARG MET ALA ALA PRO ARG THR TYR THR PHE SEQRES 18 A 230 ILE ARG GLN LEU ALA GLU ARG ALA SER SEQRES 1 B 230 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 230 LEU VAL PRO ARG GLY SER HIS MET ALA HIS GLY VAL LEU SEQRES 3 B 230 LEU GLU GLU SER GLY LEU ASP VAL GLN THR ILE PRO SER SEQRES 4 B 230 HIS ASP VAL LEU GLY ARG ILE VAL ILE VAL PRO GLU THR SEQRES 5 B 230 ASP PHE SER PHE ASP GLU ALA ASN GLU THR ILE ARG THR SEQRES 6 B 230 LEU ALA ARG ILE ASP ARG ARG ILE LEU GLU GLN ALA ALA SEQRES 7 B 230 ASN HIS HIS ILE TYR ILE GLN LEU LEU THR ASN PRO ILE SEQRES 8 B 230 THR ASP GLU PRO ILE ALA ARG HIS LEU ARG GLY LYS THR SEQRES 9 B 230 PRO ARG GLY TYR VAL PRO GLY SER LYS THR TRP ASP GLU SEQRES 10 B 230 VAL PRO GLY ILE GLY GLY ALA HIS LEU VAL LEU VAL ARG SEQRES 11 B 230 LEU GLY HIS SER GLU LYS GLY LYS GLY HIS GLY SER ILE SEQRES 12 B 230 ASN LEU GLU LEU HIS GLU PHE ALA HIS SER LEU ASP TYR SEQRES 13 B 230 ILE VAL PHE ASP HIS ILE HIS GLU THR ASP GLU PHE GLN SEQRES 14 B 230 ALA LEU TRP ARG GLU GLU ALA PRO GLN LEU PHE PRO ARG SEQRES 15 B 230 GLU TYR TYR PHE LEU THR TYR PRO GLU GLU TYR PHE ALA SEQRES 16 B 230 GLU SER PHE ALA TYR TYR TYR VAL SER GLU LYS THR GLN SEQRES 17 B 230 GLU THR LEU ARG MET ALA ALA PRO ARG THR TYR THR PHE SEQRES 18 B 230 ILE ARG GLN LEU ALA GLU ARG ALA SER HET ZN A 701 1 HET BCN A 702 23 HET PEG A 703 17 HET EDO A 704 10 HET ZN B 701 1 HET BCN B 702 23 HET PEG B 703 17 HET PEG B 704 17 HETNAM ZN ZINC ION HETNAM BCN BICINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 BCN 2(C6 H13 N O4) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 6 EDO C2 H6 O2 FORMUL 11 HOH *242(H2 O) HELIX 1 AA1 GLY A 23 ALA A 27 5 5 HELIX 2 AA2 GLU A 33 SER A 35 5 3 HELIX 3 AA3 SER A 44 GLY A 49 1 6 HELIX 4 AA4 SER A 60 ALA A 72 1 13 HELIX 5 AA5 ASP A 75 HIS A 85 1 11 HELIX 6 AA6 PRO A 95 ARG A 106 5 12 HELIX 7 AA7 THR A 119 VAL A 123 5 5 HELIX 8 AA8 ASN A 149 VAL A 163 1 15 HELIX 9 AA9 HIS A 166 GLU A 169 5 4 HELIX 10 AB1 THR A 170 PHE A 185 1 16 HELIX 11 AB2 GLU A 188 TYR A 194 1 7 HELIX 12 AB3 TYR A 194 SER A 209 1 16 HELIX 13 AB4 SER A 209 ALA A 220 1 12 HELIX 14 AB5 ALA A 220 GLN A 229 1 10 HELIX 15 AB6 LEU A 230 ALA A 234 5 5 HELIX 16 AB7 GLU B 33 SER B 35 5 3 HELIX 17 AB8 SER B 44 ILE B 51 1 8 HELIX 18 AB9 SER B 60 ALA B 72 1 13 HELIX 19 AC1 ASP B 75 HIS B 85 1 11 HELIX 20 AC2 PRO B 95 ARG B 106 5 12 HELIX 21 AC3 THR B 119 VAL B 123 5 5 HELIX 22 AC4 ASN B 149 VAL B 163 1 15 HELIX 23 AC5 HIS B 166 GLU B 169 5 4 HELIX 24 AC6 THR B 170 PHE B 185 1 16 HELIX 25 AC7 GLU B 188 TYR B 194 1 7 HELIX 26 AC8 TYR B 194 SER B 209 1 16 HELIX 27 AC9 SER B 209 ALA B 220 1 12 HELIX 28 AD1 ALA B 220 LEU B 230 1 11 HELIX 29 AD2 ALA B 231 ARG B 233 5 3 SHEET 1 AA1 5 VAL A 30 LEU A 31 0 SHEET 2 AA1 5 VAL A 52 VAL A 54 -1 O VAL A 54 N VAL A 30 SHEET 3 AA1 5 TYR A 88 LEU A 92 1 O LEU A 91 N ILE A 53 SHEET 4 AA1 5 LEU A 131 ARG A 135 1 O VAL A 132 N GLN A 90 SHEET 5 AA1 5 GLY A 125 ILE A 126 -1 N ILE A 126 O LEU A 133 SHEET 1 AA2 5 VAL B 30 LEU B 31 0 SHEET 2 AA2 5 VAL B 52 VAL B 54 -1 O VAL B 54 N VAL B 30 SHEET 3 AA2 5 TYR B 88 LEU B 92 1 O LEU B 91 N ILE B 53 SHEET 4 AA2 5 LEU B 131 ARG B 135 1 O VAL B 132 N GLN B 90 SHEET 5 AA2 5 GLY B 125 ILE B 126 -1 N ILE B 126 O LEU B 133 LINK NE2 HIS A 153 ZN ZN A 701 1555 1555 2.17 LINK NE2 HIS A 157 ZN ZN A 701 1555 1555 2.14 LINK OE1 GLU A 197 ZN ZN A 701 1555 1555 2.01 LINK ZN ZN A 701 O6 BCN A 702 1555 1555 2.11 LINK ZN ZN A 701 O22 BCN A 702 1555 1555 2.04 LINK ZN ZN A 701 N1 BCN A 702 1555 1555 2.34 LINK NE2 HIS B 153 ZN ZN B 701 1555 1555 2.15 LINK NE2 HIS B 157 ZN ZN B 701 1555 1555 2.15 LINK OE1 GLU B 197 ZN ZN B 701 1555 1555 2.01 LINK ZN ZN B 701 N1 BCN B 702 1555 1555 2.37 LINK ZN ZN B 701 O6 BCN B 702 1555 1555 2.11 LINK ZN ZN B 701 O22 BCN B 702 1555 1555 2.07 CRYST1 126.247 126.247 64.043 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015615 0.00000 CONECT 2076 6761 CONECT 2138 6761 CONECT 2814 6761 CONECT 5395 6812 CONECT 5457 6812 CONECT 6133 6812 CONECT 6761 2076 2138 2814 6762 CONECT 6761 6766 6772 CONECT 6762 6761 6763 6767 6770 CONECT 6763 6762 6764 6773 6774 CONECT 6764 6763 6765 6766 CONECT 6765 6764 CONECT 6766 6761 6764 CONECT 6767 6762 6768 6775 6776 CONECT 6768 6767 6769 6777 6778 CONECT 6769 6768 6779 CONECT 6770 6762 6771 6780 6781 CONECT 6771 6770 6772 6782 6783 CONECT 6772 6761 6771 6784 CONECT 6773 6763 CONECT 6774 6763 CONECT 6775 6767 CONECT 6776 6767 CONECT 6777 6768 CONECT 6778 6768 CONECT 6779 6769 CONECT 6780 6770 CONECT 6781 6770 CONECT 6782 6771 CONECT 6783 6771 CONECT 6784 6772 CONECT 6785 6786 6787 6792 6793 CONECT 6786 6785 6794 CONECT 6787 6785 6788 6795 6796 CONECT 6788 6787 6789 CONECT 6789 6788 6790 6797 6798 CONECT 6790 6789 6791 6799 6800 CONECT 6791 6790 6801 CONECT 6792 6785 CONECT 6793 6785 CONECT 6794 6786 CONECT 6795 6787 CONECT 6796 6787 CONECT 6797 6789 CONECT 6798 6789 CONECT 6799 6790 CONECT 6800 6790 CONECT 6801 6791 CONECT 6802 6803 6804 6806 6807 CONECT 6803 6802 6808 CONECT 6804 6802 6805 6809 6810 CONECT 6805 6804 6811 CONECT 6806 6802 CONECT 6807 6802 CONECT 6808 6803 CONECT 6809 6804 CONECT 6810 6804 CONECT 6811 6805 CONECT 6812 5395 5457 6133 6813 CONECT 6812 6817 6823 CONECT 6813 6812 6814 6818 6821 CONECT 6814 6813 6815 6824 6825 CONECT 6815 6814 6816 6817 CONECT 6816 6815 CONECT 6817 6812 6815 CONECT 6818 6813 6819 6826 6827 CONECT 6819 6818 6820 6828 6829 CONECT 6820 6819 6830 CONECT 6821 6813 6822 6831 6832 CONECT 6822 6821 6823 6833 6834 CONECT 6823 6812 6822 6835 CONECT 6824 6814 CONECT 6825 6814 CONECT 6826 6818 CONECT 6827 6818 CONECT 6828 6819 CONECT 6829 6819 CONECT 6830 6820 CONECT 6831 6821 CONECT 6832 6821 CONECT 6833 6822 CONECT 6834 6822 CONECT 6835 6823 CONECT 6836 6837 6838 6843 6844 CONECT 6837 6836 6845 CONECT 6838 6836 6839 6846 6847 CONECT 6839 6838 6840 CONECT 6840 6839 6841 6848 6849 CONECT 6841 6840 6842 6850 6851 CONECT 6842 6841 6852 CONECT 6843 6836 CONECT 6844 6836 CONECT 6845 6837 CONECT 6846 6838 CONECT 6847 6838 CONECT 6848 6840 CONECT 6849 6840 CONECT 6850 6841 CONECT 6851 6841 CONECT 6852 6842 CONECT 6853 6854 6855 6860 6861 CONECT 6854 6853 6862 CONECT 6855 6853 6856 6863 6864 CONECT 6856 6855 6857 CONECT 6857 6856 6858 6865 6866 CONECT 6858 6857 6859 6867 6868 CONECT 6859 6858 6869 CONECT 6860 6853 CONECT 6861 6853 CONECT 6862 6854 CONECT 6863 6855 CONECT 6864 6855 CONECT 6865 6857 CONECT 6866 6857 CONECT 6867 6858 CONECT 6868 6858 CONECT 6869 6859 MASTER 386 0 8 29 10 0 0 6 3723 2 117 36 END