HEADER HYDROLASE 12-JUL-24 9G3T TITLE STRUCTURE OF THE PRO-PRO ENDOPEPTIDASE (PPEP-3) E153A Y189F FROM TITLE 2 GEOBACILLUS THERMODENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATLF-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS NG80-2; SOURCE 3 ORGANISM_TAXID: 420246; SOURCE 4 GENE: GTNG_1672; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENDOPEPTIDASE, METALLOPROTEASE, ZINC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.CLAUSHUIS,F.WOJTALLA,H.VAN LEEUWEN,J.CORVER,U.BAUMANN,P.HENSBERGEN REVDAT 3 18-FEB-26 9G3T 1 JRNL REVDAT 2 04-FEB-26 9G3T 1 JRNL REMARK REVDAT 1 23-JUL-25 9G3T 0 JRNL AUTH B.CLAUSHUIS,F.WOJTALLA,L.PAPENHAGEN,R.A.CORDFUNKE,A.H.DE RU, JRNL AUTH 2 H.C.VAN LEEUWEN,J.CORVER,P.J.HENSBERGEN,U.BAUMANN JRNL TITL STRUCTURAL ANALYSES AND SUBSTRATE PROFILING OF PPEP-3 JRNL TITL 2 PROVIDE NEW INSIGHTS INTO THE MOLECULAR BASIS OF PRO-PRO JRNL TITL 3 ENDOPEPTIDASE SPECIFICITY. JRNL REF ISCIENCE V. 29 14360 2026 JRNL REFN ESSN 2589-0042 JRNL PMID 41583563 JRNL DOI 10.1016/J.ISCI.2025.114360 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 128292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.460 REMARK 3 FREE R VALUE TEST SET COUNT : 4438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.8100 - 4.9700 1.00 4132 141 0.1841 0.1923 REMARK 3 2 4.9700 - 3.9400 1.00 4149 146 0.1320 0.1308 REMARK 3 3 3.9400 - 3.4400 1.00 4154 146 0.1372 0.1802 REMARK 3 4 3.4400 - 3.1300 1.00 4112 146 0.1562 0.1733 REMARK 3 5 3.1300 - 2.9000 1.00 4140 148 0.1465 0.1625 REMARK 3 6 2.9000 - 2.7300 1.00 4119 155 0.1463 0.1535 REMARK 3 7 2.7300 - 2.6000 1.00 4155 149 0.1362 0.1814 REMARK 3 8 2.6000 - 2.4800 1.00 4110 148 0.1285 0.1739 REMARK 3 9 2.4800 - 2.3900 1.00 4159 152 0.1306 0.1328 REMARK 3 10 2.3900 - 2.3100 1.00 4141 137 0.1252 0.1571 REMARK 3 11 2.3100 - 2.2300 1.00 4105 148 0.1266 0.1645 REMARK 3 12 2.2300 - 2.1700 1.00 4160 149 0.1267 0.1643 REMARK 3 13 2.1700 - 2.1100 1.00 4142 153 0.1368 0.1575 REMARK 3 14 2.1100 - 2.0600 1.00 4122 149 0.1422 0.1640 REMARK 3 15 2.0600 - 2.0100 1.00 4118 148 0.1523 0.1946 REMARK 3 16 2.0100 - 1.9700 1.00 4149 149 0.1447 0.1720 REMARK 3 17 1.9700 - 1.9300 1.00 4108 149 0.1475 0.1798 REMARK 3 18 1.9300 - 1.9000 1.00 4190 155 0.1593 0.1440 REMARK 3 19 1.9000 - 1.8600 1.00 4125 137 0.1647 0.2025 REMARK 3 20 1.8600 - 1.8300 1.00 4145 148 0.1641 0.1975 REMARK 3 21 1.8300 - 1.8000 1.00 4102 149 0.1823 0.2041 REMARK 3 22 1.8000 - 1.7700 1.00 4134 151 0.2017 0.2159 REMARK 3 23 1.7700 - 1.7500 1.00 4121 152 0.2147 0.2281 REMARK 3 24 1.7500 - 1.7200 1.00 4133 142 0.2264 0.2702 REMARK 3 25 1.7200 - 1.7000 1.00 4132 147 0.2399 0.3056 REMARK 3 26 1.7000 - 1.6800 1.00 4109 145 0.2478 0.2448 REMARK 3 27 1.6800 - 1.6600 1.00 4130 140 0.2633 0.2934 REMARK 3 28 1.6600 - 1.6400 1.00 4188 161 0.2849 0.2637 REMARK 3 29 1.6400 - 1.6200 1.00 4087 143 0.3051 0.3390 REMARK 3 30 1.6200 - 1.6000 0.96 3983 155 0.3122 0.3054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3607 REMARK 3 ANGLE : 1.016 4893 REMARK 3 CHIRALITY : 0.058 523 REMARK 3 PLANARITY : 0.010 639 REMARK 3 DIHEDRAL : 14.771 1340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 21 THROUGH 235) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1498 17.7503 5.5813 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.1414 REMARK 3 T33: 0.1711 T12: -0.0113 REMARK 3 T13: -0.0092 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.0019 L22: 0.5856 REMARK 3 L33: 1.0109 L12: -0.0140 REMARK 3 L13: -0.0465 L23: -0.1662 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0559 S13: 0.0169 REMARK 3 S21: -0.0355 S22: 0.0019 S23: -0.0190 REMARK 3 S31: 0.0105 S32: -0.0634 S33: 0.0030 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 29 THROUGH 234) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5098 -11.9716 18.5745 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1138 REMARK 3 T33: 0.1317 T12: 0.0181 REMARK 3 T13: -0.0333 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.6883 L22: 1.4457 REMARK 3 L33: 0.9225 L12: 0.6294 REMARK 3 L13: 0.1919 L23: -0.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: -0.0782 S13: -0.0118 REMARK 3 S21: 0.0993 S22: -0.0497 S23: -0.1023 REMARK 3 S31: -0.0393 S32: 0.0026 S33: 0.0037 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9G3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292140199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 1.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M ETHYLENE GLYCOLS 0.1 M TRIS REMARK 280 -BICINE PH 8.5 30 % P550MME_P20K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.74150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.81100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.81100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.87075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.81100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.81100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.61225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.81100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.81100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.87075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.81100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.81100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.61225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.74150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 LEU A 19 REMARK 465 VAL A 20 REMARK 465 MET B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 LEU B 19 REMARK 465 VAL B 20 REMARK 465 PRO B 21 REMARK 465 ARG B 22 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 HIS B 25 REMARK 465 MET B 26 REMARK 465 ALA B 27 REMARK 465 HIS B 28 REMARK 465 SER B 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 125.53 -39.52 REMARK 500 ASN A 149 111.23 -160.28 REMARK 500 LYS B 118 146.56 -170.21 REMARK 500 ARG B 233 -56.10 150.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 HIS A 157 NE2 94.2 REMARK 620 3 GLU A 197 OE1 98.5 89.0 REMARK 620 4 GLU A 197 OE1 85.9 100.8 16.7 REMARK 620 5 BCN A 702 O22 95.2 94.1 165.7 164.9 REMARK 620 6 BCN A 702 O4 94.4 170.4 93.8 83.9 81.0 REMARK 620 7 BCN A 702 N1 171.6 92.6 86.4 97.6 79.5 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 153 NE2 REMARK 620 2 HIS B 157 NE2 91.7 REMARK 620 3 GLU B 197 OE1 89.2 92.9 REMARK 620 4 BCN B 303 O4 175.2 92.5 92.9 REMARK 620 5 BCN B 303 N1 95.0 170.3 94.2 80.5 REMARK 620 6 BCN B 303 O21 96.2 92.7 172.1 81.3 79.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9G0J RELATED DB: PDB REMARK 900 9G0J CONTAINS PPEP-3 WT STRUCTURE DBREF 9G3T A 27 235 UNP A4INY2 A4INY2_GEOTN 27 235 DBREF 9G3T B 27 235 UNP A4INY2 A4INY2_GEOTN 27 235 SEQADV 9G3T MET A 6 UNP A4INY2 INITIATING METHIONINE SEQADV 9G3T GLY A 7 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER A 8 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER A 9 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS A 10 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS A 11 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS A 12 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS A 13 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS A 14 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS A 15 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER A 16 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER A 17 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T GLY A 18 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T LEU A 19 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T VAL A 20 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T PRO A 21 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T ARG A 22 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T GLY A 23 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER A 24 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS A 25 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T MET A 26 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T ALA A 154 UNP A4INY2 GLU 154 ENGINEERED MUTATION SEQADV 9G3T PHE A 190 UNP A4INY2 TYR 190 ENGINEERED MUTATION SEQADV 9G3T MET B 6 UNP A4INY2 INITIATING METHIONINE SEQADV 9G3T GLY B 7 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER B 8 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER B 9 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS B 10 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS B 11 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS B 12 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS B 13 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS B 14 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS B 15 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER B 16 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER B 17 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T GLY B 18 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T LEU B 19 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T VAL B 20 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T PRO B 21 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T ARG B 22 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T GLY B 23 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T SER B 24 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T HIS B 25 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T MET B 26 UNP A4INY2 EXPRESSION TAG SEQADV 9G3T ALA B 154 UNP A4INY2 GLU 154 ENGINEERED MUTATION SEQADV 9G3T PHE B 190 UNP A4INY2 TYR 190 ENGINEERED MUTATION SEQRES 1 A 230 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 230 LEU VAL PRO ARG GLY SER HIS MET ALA HIS GLY VAL LEU SEQRES 3 A 230 LEU GLU GLU SER GLY LEU ASP VAL GLN THR ILE PRO SER SEQRES 4 A 230 HIS ASP VAL LEU GLY ARG ILE VAL ILE VAL PRO GLU THR SEQRES 5 A 230 ASP PHE SER PHE ASP GLU ALA ASN GLU THR ILE ARG THR SEQRES 6 A 230 LEU ALA ARG ILE ASP ARG ARG ILE LEU GLU GLN ALA ALA SEQRES 7 A 230 ASN HIS HIS ILE TYR ILE GLN LEU LEU THR ASN PRO ILE SEQRES 8 A 230 THR ASP GLU PRO ILE ALA ARG HIS LEU ARG GLY LYS THR SEQRES 9 A 230 PRO ARG GLY TYR VAL PRO GLY SER LYS THR TRP ASP GLU SEQRES 10 A 230 VAL PRO GLY ILE GLY GLY ALA HIS LEU VAL LEU VAL ARG SEQRES 11 A 230 LEU GLY HIS SER GLU LYS GLY LYS GLY HIS GLY SER ILE SEQRES 12 A 230 ASN LEU GLU LEU HIS ALA PHE ALA HIS SER LEU ASP TYR SEQRES 13 A 230 ILE VAL PHE ASP HIS ILE HIS GLU THR ASP GLU PHE GLN SEQRES 14 A 230 ALA LEU TRP ARG GLU GLU ALA PRO GLN LEU PHE PRO ARG SEQRES 15 A 230 GLU TYR PHE PHE LEU THR TYR PRO GLU GLU TYR PHE ALA SEQRES 16 A 230 GLU SER PHE ALA TYR TYR TYR VAL SER GLU LYS THR GLN SEQRES 17 A 230 GLU THR LEU ARG MET ALA ALA PRO ARG THR TYR THR PHE SEQRES 18 A 230 ILE ARG GLN LEU ALA GLU ARG ALA SER SEQRES 1 B 230 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 230 LEU VAL PRO ARG GLY SER HIS MET ALA HIS GLY VAL LEU SEQRES 3 B 230 LEU GLU GLU SER GLY LEU ASP VAL GLN THR ILE PRO SER SEQRES 4 B 230 HIS ASP VAL LEU GLY ARG ILE VAL ILE VAL PRO GLU THR SEQRES 5 B 230 ASP PHE SER PHE ASP GLU ALA ASN GLU THR ILE ARG THR SEQRES 6 B 230 LEU ALA ARG ILE ASP ARG ARG ILE LEU GLU GLN ALA ALA SEQRES 7 B 230 ASN HIS HIS ILE TYR ILE GLN LEU LEU THR ASN PRO ILE SEQRES 8 B 230 THR ASP GLU PRO ILE ALA ARG HIS LEU ARG GLY LYS THR SEQRES 9 B 230 PRO ARG GLY TYR VAL PRO GLY SER LYS THR TRP ASP GLU SEQRES 10 B 230 VAL PRO GLY ILE GLY GLY ALA HIS LEU VAL LEU VAL ARG SEQRES 11 B 230 LEU GLY HIS SER GLU LYS GLY LYS GLY HIS GLY SER ILE SEQRES 12 B 230 ASN LEU GLU LEU HIS ALA PHE ALA HIS SER LEU ASP TYR SEQRES 13 B 230 ILE VAL PHE ASP HIS ILE HIS GLU THR ASP GLU PHE GLN SEQRES 14 B 230 ALA LEU TRP ARG GLU GLU ALA PRO GLN LEU PHE PRO ARG SEQRES 15 B 230 GLU TYR PHE PHE LEU THR TYR PRO GLU GLU TYR PHE ALA SEQRES 16 B 230 GLU SER PHE ALA TYR TYR TYR VAL SER GLU LYS THR GLN SEQRES 17 B 230 GLU THR LEU ARG MET ALA ALA PRO ARG THR TYR THR PHE SEQRES 18 B 230 ILE ARG GLN LEU ALA GLU ARG ALA SER HET ZN A 701 1 HET BCN A 702 23 HET PG4 A 703 31 HET PEG B 301 17 HET ZN B 302 1 HET BCN B 303 23 HET PEG B 304 17 HET PEG B 305 17 HETNAM ZN ZINC ION HETNAM BCN BICINE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 ZN 2(ZN 2+) FORMUL 4 BCN 2(C6 H13 N O4) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 PEG 3(C4 H10 O3) FORMUL 11 HOH *254(H2 O) HELIX 1 AA1 GLY A 23 HIS A 28 1 6 HELIX 2 AA2 GLU A 33 SER A 35 5 3 HELIX 3 AA3 SER A 44 GLY A 49 1 6 HELIX 4 AA4 SER A 60 ALA A 72 1 13 HELIX 5 AA5 ASP A 75 HIS A 85 1 11 HELIX 6 AA6 PRO A 95 ARG A 106 5 12 HELIX 7 AA7 THR A 119 VAL A 123 5 5 HELIX 8 AA8 ASN A 149 VAL A 163 1 15 HELIX 9 AA9 HIS A 166 GLU A 169 5 4 HELIX 10 AB1 THR A 170 PHE A 185 1 16 HELIX 11 AB2 GLU A 188 TYR A 194 1 7 HELIX 12 AB3 TYR A 194 SER A 209 1 16 HELIX 13 AB4 SER A 209 ALA A 220 1 12 HELIX 14 AB5 ALA A 220 GLN A 229 1 10 HELIX 15 AB6 LEU A 230 ALA A 234 5 5 HELIX 16 AB7 GLU B 33 SER B 35 5 3 HELIX 17 AB8 SER B 44 GLY B 49 1 6 HELIX 18 AB9 SER B 60 ALA B 72 1 13 HELIX 19 AC1 ASP B 75 HIS B 85 1 11 HELIX 20 AC2 PRO B 95 ARG B 106 5 12 HELIX 21 AC3 THR B 119 VAL B 123 5 5 HELIX 22 AC4 ASN B 149 VAL B 163 1 15 HELIX 23 AC5 HIS B 166 GLU B 169 5 4 HELIX 24 AC6 THR B 170 PHE B 185 1 16 HELIX 25 AC7 GLU B 188 TYR B 194 1 7 HELIX 26 AC8 TYR B 194 SER B 209 1 16 HELIX 27 AC9 SER B 209 ALA B 220 1 12 HELIX 28 AD1 ALA B 220 LEU B 230 1 11 HELIX 29 AD2 ALA B 231 ARG B 233 5 3 SHEET 1 AA1 5 VAL A 30 LEU A 31 0 SHEET 2 AA1 5 VAL A 52 VAL A 54 -1 O VAL A 54 N VAL A 30 SHEET 3 AA1 5 TYR A 88 LEU A 92 1 O LEU A 91 N ILE A 53 SHEET 4 AA1 5 LEU A 131 ARG A 135 1 O VAL A 132 N GLN A 90 SHEET 5 AA1 5 GLY A 125 ILE A 126 -1 N ILE A 126 O LEU A 133 SHEET 1 AA2 5 VAL B 30 LEU B 31 0 SHEET 2 AA2 5 VAL B 52 VAL B 54 -1 O VAL B 54 N VAL B 30 SHEET 3 AA2 5 TYR B 88 LEU B 92 1 O LEU B 91 N ILE B 53 SHEET 4 AA2 5 LEU B 131 ARG B 135 1 O VAL B 132 N GLN B 90 SHEET 5 AA2 5 GLY B 125 ILE B 126 -1 N ILE B 126 O LEU B 133 LINK NE2 HIS A 153 ZN ZN A 701 1555 1555 2.16 LINK NE2 HIS A 157 ZN ZN A 701 1555 1555 2.14 LINK OE1AGLU A 197 ZN ZN A 701 1555 1555 1.97 LINK OE1BGLU A 197 ZN ZN A 701 1555 1555 2.03 LINK ZN ZN A 701 O22 BCN A 702 1555 1555 2.20 LINK ZN ZN A 701 O4 BCN A 702 1555 1555 2.17 LINK ZN ZN A 701 N1 BCN A 702 1555 1555 2.27 LINK NE2 HIS B 153 ZN ZN B 302 1555 1555 2.17 LINK NE2 HIS B 157 ZN ZN B 302 1555 1555 2.13 LINK OE1 GLU B 197 ZN ZN B 302 1555 1555 2.06 LINK ZN ZN B 302 O4 BCN B 303 1555 1555 1.97 LINK ZN ZN B 302 N1 BCN B 303 1555 1555 2.36 LINK ZN ZN B 302 O21 BCN B 303 1555 1555 2.16 CRYST1 125.622 125.622 63.483 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015752 0.00000 CONECT 2120 6803 CONECT 2177 6803 CONECT 2856 6803 CONECT 2857 6803 CONECT 5443 6875 CONECT 5500 6875 CONECT 6175 6875 CONECT 6803 2120 2177 2856 2857 CONECT 6803 6804 6808 6811 CONECT 6804 6803 6805 6809 6812 CONECT 6805 6804 6806 6815 6816 CONECT 6806 6805 6807 6808 CONECT 6807 6806 CONECT 6808 6803 6806 CONECT 6809 6804 6810 6817 6818 CONECT 6810 6809 6811 6819 6820 CONECT 6811 6803 6810 6821 CONECT 6812 6804 6813 6822 6823 CONECT 6813 6812 6814 6824 6825 CONECT 6814 6813 6826 CONECT 6815 6805 CONECT 6816 6805 CONECT 6817 6809 CONECT 6818 6809 CONECT 6819 6810 CONECT 6820 6810 CONECT 6821 6811 CONECT 6822 6812 CONECT 6823 6812 CONECT 6824 6813 CONECT 6825 6813 CONECT 6826 6814 CONECT 6827 6828 6840 CONECT 6828 6827 6829 6841 6842 CONECT 6829 6828 6830 6843 6844 CONECT 6830 6829 6831 CONECT 6831 6830 6832 6845 6846 CONECT 6832 6831 6833 6847 6848 CONECT 6833 6832 6834 CONECT 6834 6833 6835 6849 6850 CONECT 6835 6834 6836 6851 6852 CONECT 6836 6835 6837 CONECT 6837 6836 6838 6853 6854 CONECT 6838 6837 6839 6855 6856 CONECT 6839 6838 6857 CONECT 6840 6827 CONECT 6841 6828 CONECT 6842 6828 CONECT 6843 6829 CONECT 6844 6829 CONECT 6845 6831 CONECT 6846 6831 CONECT 6847 6832 CONECT 6848 6832 CONECT 6849 6834 CONECT 6850 6834 CONECT 6851 6835 CONECT 6852 6835 CONECT 6853 6837 CONECT 6854 6837 CONECT 6855 6838 CONECT 6856 6838 CONECT 6857 6839 CONECT 6858 6859 6860 6865 6866 CONECT 6859 6858 6867 CONECT 6860 6858 6861 6868 6869 CONECT 6861 6860 6862 CONECT 6862 6861 6863 6870 6871 CONECT 6863 6862 6864 6872 6873 CONECT 6864 6863 6874 CONECT 6865 6858 CONECT 6866 6858 CONECT 6867 6859 CONECT 6868 6860 CONECT 6869 6860 CONECT 6870 6862 CONECT 6871 6862 CONECT 6872 6863 CONECT 6873 6863 CONECT 6874 6864 CONECT 6875 5443 5500 6175 6876 CONECT 6875 6879 6883 CONECT 6876 6875 6877 6881 6884 CONECT 6877 6876 6878 6887 6888 CONECT 6878 6877 6879 6880 CONECT 6879 6875 6878 CONECT 6880 6878 CONECT 6881 6876 6882 6889 6890 CONECT 6882 6881 6883 6891 6892 CONECT 6883 6875 6882 6893 CONECT 6884 6876 6885 6894 6895 CONECT 6885 6884 6886 6896 6897 CONECT 6886 6885 6898 CONECT 6887 6877 CONECT 6888 6877 CONECT 6889 6881 CONECT 6890 6881 CONECT 6891 6882 CONECT 6892 6882 CONECT 6893 6883 CONECT 6894 6884 CONECT 6895 6884 CONECT 6896 6885 CONECT 6897 6885 CONECT 6898 6886 CONECT 6899 6900 6901 6906 6907 CONECT 6900 6899 6908 CONECT 6901 6899 6902 6909 6910 CONECT 6902 6901 6903 CONECT 6903 6902 6904 6911 6912 CONECT 6904 6903 6905 6913 6914 CONECT 6905 6904 6915 CONECT 6906 6899 CONECT 6907 6899 CONECT 6908 6900 CONECT 6909 6901 CONECT 6910 6901 CONECT 6911 6903 CONECT 6912 6903 CONECT 6913 6904 CONECT 6914 6904 CONECT 6915 6905 CONECT 6916 6917 6918 6923 6924 CONECT 6917 6916 6925 CONECT 6918 6916 6919 6926 6927 CONECT 6919 6918 6920 CONECT 6920 6919 6921 6928 6929 CONECT 6921 6920 6922 6930 6931 CONECT 6922 6921 6932 CONECT 6923 6916 CONECT 6924 6916 CONECT 6925 6917 CONECT 6926 6918 CONECT 6927 6918 CONECT 6928 6920 CONECT 6929 6920 CONECT 6930 6921 CONECT 6931 6921 CONECT 6932 6922 MASTER 383 0 8 29 10 0 0 6 3734 2 139 36 END