HEADER OXIDOREDUCTASE 12-JUL-24 9G43 TITLE CRYSTAL STRUCTURE OF A GALACTOSE OXIDASE FROM PSEUDOARTHROBACTER TITLE 2 SICCITOLERANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.9; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SER-HIS-SER-SER-GLY-ALA-ALA; COMPND 8 CHAIN: Q; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDARTHROBACTER SICCITOLERANS; SOURCE 3 ORGANISM_TAXID: 861266; SOURCE 4 GENE: GAOA, ARTSIC4J27_1011; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PSEUDARTHROBACTER SICCITOLERANS; SOURCE 9 ORGANISM_TAXID: 861266; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GALACTOSE OXIDASE, AUXILIARY ACTIVITY 5 FAMILY, BIOCATALYSIS., KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.T.BORGES,T.FRAZAO,C.FRAZAO,L.MARTINS REVDAT 1 23-JUL-25 9G43 0 JRNL AUTH A.TABORDA,T.FRAZAO,P.T.BORGES,L.MARTINS JRNL TITL UNRAVELING THE CATALYTIC AND STRUCTURAL PROPERTIES OF A NEW JRNL TITL 2 BACTERIAL GALACTOSE OXIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 79.9 REMARK 3 NUMBER OF REFLECTIONS : 131969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 6747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 509 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 751 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : -2.02000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.808 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4853 ; 0.011 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6665 ; 1.656 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 7.126 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ; 7.017 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 669 ;12.898 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 756 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3852 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2587 ; 3.865 ; 1.139 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3259 ; 5.735 ; 2.055 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2266 ; 5.539 ; 1.333 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7713 ;14.427 ;18.010 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4853 ; 4.472 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9G43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292140203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138716 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 91.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM HEPES AND MOPS PH 7.5, REMARK 280 0.03 M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.03 M CALCIUM CHLORIDE REMARK 280 DIHYDRATE, 12.5% (V/V) MPD, 12.5% (W/V) PEG 1000 AND 12.5% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.13550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.64200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.47150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.64200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.13550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.47150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1146 O HOH A 1494 1.50 REMARK 500 O HOH A 1731 O HOH A 1761 1.62 REMARK 500 O HOH A 1669 O HOH A 1681 1.73 REMARK 500 O HOH A 1646 O HOH A 1651 1.75 REMARK 500 SG CYS A 361 CE1 TYR A 405 1.76 REMARK 500 O HOH A 1101 O HOH A 1191 1.85 REMARK 500 O HOH A 1580 O HOH A 1766 1.91 REMARK 500 SD MET A 218 O HOH A 1806 1.97 REMARK 500 O HOH A 1606 O HOH A 1761 2.07 REMARK 500 O HOH A 1598 O HOH A 1729 2.07 REMARK 500 O HOH A 1103 O HOH A 1124 2.10 REMARK 500 O HOH A 1112 O HOH A 1231 2.10 REMARK 500 O HOH A 1279 O HOH A 1606 2.14 REMARK 500 O HOH A 1799 O HOH A 1832 2.16 REMARK 500 O HOH A 1527 O HOH A 1572 2.17 REMARK 500 OD1 ASN A 301 O HOH A 1101 2.18 REMARK 500 O HOH A 1108 O HOH A 1422 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1666 O HOH A 1684 1455 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 654 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 276 44.95 -84.79 REMARK 500 SER A 321 -89.27 -113.97 REMARK 500 ALA A 322 -158.04 -164.62 REMARK 500 ALA A 504 -130.89 43.91 REMARK 500 THR A 616 -137.84 -116.97 REMARK 500 THR A 703 -10.35 79.70 REMARK 500 THR A 718 -153.78 -123.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 179 TRP A 180 147.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1843 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1844 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A1845 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1846 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1847 DISTANCE = 6.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1007 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 170 O REMARK 620 2 ASP A 173 OD1 77.9 REMARK 620 3 ASP A 175 O 172.2 94.7 REMARK 620 4 THR A 178 O 94.9 140.5 89.3 REMARK 620 5 THR A 178 OG1 90.6 70.8 84.6 70.5 REMARK 620 6 ALA A 281 O 86.2 140.6 101.2 76.1 145.9 REMARK 620 7 GLU A 282 OE2 92.9 70.3 86.8 149.3 139.2 74.9 REMARK 620 N 1 2 3 4 5 6 DBREF1 9G43 A 143 760 UNP A0A024GZ97_9MICC DBREF2 9G43 A A0A024GZ97 143 760 DBREF 9G43 Q 16 22 PDB 9G43 9G43 16 22 SEQRES 1 A 618 ALA SER GLY PRO LEU PRO ARG ASP GLY TRP LEU ALA SER SEQRES 2 A 618 ALA SER ASP GLN GLU THR ALA ASN GLU ASN GLY ARG ALA SEQRES 3 A 618 ALA ASN VAL LEU ASP GLY ASP ALA ALA THR LEU TRP HIS SEQRES 4 A 618 SER ARG TYR SER PRO ALA PRO ALA ALA PRO LEU PRO HIS SEQRES 5 A 618 THR LEU THR ILE ASP MET GLY VAL VAL ASN GLN VAL ALA SEQRES 6 A 618 GLY LEU ARG TYR LEU PRO ARG PHE ASP ASN MET ASN GLY SEQRES 7 A 618 ARG VAL GLY GLY TYR SER ILE HIS ALA SER SER ASN GLY SEQRES 8 A 618 THR SER TRP ASN LEU LEU ALA ARG GLY THR TRP ALA ASP SEQRES 9 A 618 ASN ALA ASP GLU LYS THR VAL THR PHE ALA ALA ALA SER SEQRES 10 A 618 ALA ARG TYR ILE ARG LEU THR ALA SER THR GLU ALA GLY SEQRES 11 A 618 ASN ARG GLY PRO TRP SER SER ALA ALA GLU ILE ASN LEU SEQRES 12 A 618 LEU GLY THR PRO PRO LYS GLY PRO GLY THR TRP SER PRO SEQRES 13 A 618 THR VAL ASN PHE PRO LEU VAL PRO ALA ALA ALA ALA LEU SEQRES 14 A 618 LEU PRO GLY ASN ARG LEU LEU THR TRP SER ALA TYR SER SEQRES 15 A 618 PRO ILE THR PHE GLY GLY GLU THR GLY ILE THR GLN SER SEQRES 16 A 618 ALA ILE LEU ASP LEU ASN THR GLY ALA VAL SER GLN ALA SEQRES 17 A 618 GLU VAL ALA ASN THR GLY HIS ASP MET PHE CYS PRO GLY SEQRES 18 A 618 THR SER LEU LEU PRO ASP GLY ARG ILE LEU VAL SER GLY SEQRES 19 A 618 GLY SER ASN SER GLU LYS THR SER LEU PHE SER PRO ALA SEQRES 20 A 618 THR ASN THR TRP ALA PRO GLY PRO ASP MET ASN VAL GLY SEQRES 21 A 618 ARG GLY TYR GLN SER ASN VAL THR THR SER THR GLY GLU SEQRES 22 A 618 VAL PHE THR LEU GLY GLY SER TRP SER GLY GLY LEU GLY SEQRES 23 A 618 SER LYS HIS GLY GLU ILE TRP SER SER THR GLY GLY TRP SEQRES 24 A 618 ARG PRO LEU PRO ASP VAL PRO VAL ASP SER ILE LEU THR SEQRES 25 A 618 ASP ASP PRO GLY GLY GLU PHE ARG SER ASP ASN HIS ALA SEQRES 26 A 618 TRP LEU PHE SER ALA ALA GLY GLY ARG VAL PHE HIS ALA SEQRES 27 A 618 GLY PRO SER ARG GLU MET ASN TRP ILE SER THR ALA GLY SEQRES 28 A 618 THR GLY SER VAL THR SER ALA GLY THR ARG ALA ASP SER SEQRES 29 A 618 ALA ASP ALA MET ASN GLY ASN ALA VAL MET TYR ASP VAL SEQRES 30 A 618 GLY LYS ILE LEU THR MET GLY GLY ALA PRO GLY TYR ASP SEQRES 31 A 618 ASN SER ASP ALA THR ALA ARG ALA TYR THR ILE ASP ILE SEQRES 32 A 618 ASN ASN GLY VAL ASP VAL ALA ARG THR SER ASP MET ALA SEQRES 33 A 618 VAL SER ARG SER PHE ALA ASN GLY VAL ALA LEU PRO ASP SEQRES 34 A 618 GLY GLN VAL LEU VAL VAL GLY GLY GLN ALA HIS ALA VAL SEQRES 35 A 618 PRO PHE THR ASP THR GLY ALA ARG MET ALA PRO GLU LEU SEQRES 36 A 618 TRP ASN PRO ALA THR GLU GLU TRP THR ALA MET ALA PRO SEQRES 37 A 618 MET ALA VAL PRO ARG THR TYR HIS SER VAL ALA LEU LEU SEQRES 38 A 618 LEU ALA ASP GLY ARG VAL PHE VAL GLY GLY GLY GLY LEU SEQRES 39 A 618 CYS GLY THR CYS THR THR ASN HIS LEU ASP GLY GLU ILE SEQRES 40 A 618 PHE THR PRO PRO TYR LEU LEU ASN ALA ASP GLY SER ALA SEQRES 41 A 618 ARG THR ARG PRO THR ILE VAL ASP ALA PRO ALA THR ALA SEQRES 42 A 618 THR ALA GLY SER LYS ILE SER VAL THR THR GLY SER LYS SEQRES 43 A 618 ILE SER LYS PHE SER LEU MET ARG MET SER SER VAL THR SEQRES 44 A 618 HIS THR VAL ASN THR ASP GLN ARG ARG ILE PRO LEU THR SEQRES 45 A 618 ALA THR GLY THR TYR GLY ASN ASN THR ALA THR LEU THR SEQRES 46 A 618 LEU PRO ALA ASP ARG GLY VAL LEU VAL PRO GLY ALA TYR SEQRES 47 A 618 MET LEU PHE ALA MET ASP GLY ASN GLY VAL PRO SER VAL SEQRES 48 A 618 ALA THR THR ILE GLN ILE SER SEQRES 1 Q 7 SER HIS SER SER GLY ALA ALA HET GOL A1001 6 HET GOL A1002 6 HET GOL A1003 6 HET GOL A1004 6 HET GOL A1005 6 HET PG4 A1006 13 HET CA A1007 1 HET CL A1008 1 HET BR A1009 1 HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM BR BROMIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 PG4 C8 H18 O5 FORMUL 9 CA CA 2+ FORMUL 10 CL CL 1- FORMUL 11 BR BR 1- FORMUL 12 HOH *751(H2 O) HELIX 1 AA1 ARG A 167 ASP A 173 5 7 HELIX 2 AA2 VAL A 449 LEU A 453 5 5 HELIX 3 AA3 GLY A 459 ASP A 464 1 6 HELIX 4 AA4 ALA A 473 GLY A 475 5 3 HELIX 5 AA5 PRO A 652 LEU A 656 5 5 SHEET 1 AA1 5 LEU A 153 ALA A 156 0 SHEET 2 AA1 5 HIS A 194 LEU A 212 -1 O ASP A 199 N LEU A 153 SHEET 3 AA1 5 LYS A 251 ALA A 267 -1 O ILE A 263 N ILE A 198 SHEET 4 AA1 5 GLY A 224 SER A 230 -1 N SER A 226 O THR A 266 SHEET 5 AA1 5 ASN A 237 THR A 243 -1 O LEU A 239 N ILE A 227 SHEET 1 AA2 3 LEU A 153 ALA A 156 0 SHEET 2 AA2 3 HIS A 194 LEU A 212 -1 O ASP A 199 N LEU A 153 SHEET 3 AA2 3 GLU A 282 THR A 288 -1 O LEU A 286 N ALA A 207 SHEET 1 AA3 2 TRP A 180 HIS A 181 0 SHEET 2 AA3 2 SER A 279 ALA A 280 -1 O ALA A 280 N TRP A 180 SHEET 1 AA4 3 THR A 295 TRP A 296 0 SHEET 2 AA4 3 ASP A 646 THR A 651 -1 O THR A 651 N THR A 295 SHEET 3 AA4 3 VAL A 300 ASN A 301 -1 N VAL A 300 O GLY A 647 SHEET 1 AA5 4 THR A 295 TRP A 296 0 SHEET 2 AA5 4 ASP A 646 THR A 651 -1 O THR A 651 N THR A 295 SHEET 3 AA5 4 VAL A 629 GLY A 633 -1 N VAL A 629 O PHE A 650 SHEET 4 AA5 4 SER A 619 LEU A 623 -1 N VAL A 620 O GLY A 632 SHEET 1 AA6 5 VAL A 347 VAL A 352 0 SHEET 2 AA6 5 THR A 335 ASP A 341 -1 N THR A 335 O VAL A 352 SHEET 3 AA6 5 ARG A 316 TRP A 320 -1 N LEU A 317 O LEU A 340 SHEET 4 AA6 5 ALA A 308 LEU A 312 -1 N LEU A 312 O ARG A 316 SHEET 5 AA6 5 SER A 699 THR A 701 -1 O VAL A 700 N ALA A 309 SHEET 1 AA7 4 GLY A 363 LEU A 366 0 SHEET 2 AA7 4 ILE A 372 SER A 375 -1 O SER A 375 N GLY A 363 SHEET 3 AA7 4 THR A 383 SER A 387 -1 O SER A 384 N VAL A 374 SHEET 4 AA7 4 THR A 392 PRO A 395 -1 O THR A 392 N SER A 387 SHEET 1 AA8 4 SER A 407 THR A 410 0 SHEET 2 AA8 4 VAL A 416 LEU A 419 -1 O PHE A 417 N VAL A 409 SHEET 3 AA8 4 GLU A 433 SER A 436 -1 O TRP A 435 N VAL A 416 SHEET 4 AA8 4 GLY A 440 PRO A 443 -1 O ARG A 442 N ILE A 434 SHEET 1 AA9 4 LEU A 469 SER A 471 0 SHEET 2 AA9 4 VAL A 477 HIS A 479 -1 O PHE A 478 N PHE A 470 SHEET 3 AA9 4 GLU A 485 SER A 490 -1 O ASN A 487 N HIS A 479 SHEET 4 AA9 4 SER A 496 THR A 502 -1 O THR A 498 N TRP A 488 SHEET 1 AB1 4 ASN A 513 ASP A 518 0 SHEET 2 AB1 4 LYS A 521 MET A 525 -1 O LEU A 523 N VAL A 515 SHEET 3 AB1 4 ALA A 540 ASP A 544 -1 O ILE A 543 N ILE A 522 SHEET 4 AB1 4 ASP A 550 ARG A 553 -1 O ALA A 552 N THR A 542 SHEET 1 AB2 2 SER A 534 ASP A 535 0 SHEET 2 AB2 2 HIS A 582 ALA A 583 -1 O ALA A 583 N SER A 534 SHEET 1 AB3 4 SER A 562 ALA A 568 0 SHEET 2 AB3 4 VAL A 574 GLN A 580 -1 O LEU A 575 N VAL A 567 SHEET 3 AB3 4 GLU A 596 TRP A 598 -1 O TRP A 598 N VAL A 574 SHEET 4 AB3 4 TRP A 605 ALA A 607 -1 O THR A 606 N LEU A 597 SHEET 1 AB4 4 ILE A 668 ASP A 670 0 SHEET 2 AB4 4 LYS A 680 THR A 685 -1 O THR A 684 N ASP A 670 SHEET 3 AB4 4 THR A 723 THR A 727 -1 O ALA A 724 N VAL A 683 SHEET 4 AB4 4 THR A 716 GLY A 717 -1 N THR A 716 O THR A 725 SHEET 1 AB5 5 THR A 674 THR A 676 0 SHEET 2 AB5 5 THR A 755 SER A 760 1 O SER A 760 N ALA A 675 SHEET 3 AB5 5 GLY A 738 MET A 745 -1 N LEU A 742 O THR A 755 SHEET 4 AB5 5 LYS A 691 ARG A 696 -1 N LYS A 691 O MET A 745 SHEET 5 AB5 5 ARG A 710 THR A 714 -1 O LEU A 713 N PHE A 692 SSBOND 1 CYS A 637 CYS A 640 1555 1555 2.05 LINK O ASN A 170 CA CA A1007 1555 1555 2.27 LINK OD1 ASP A 173 CA CA A1007 1555 1555 2.48 LINK O ASP A 175 CA CA A1007 1555 1555 2.35 LINK O THR A 178 CA CA A1007 1555 1555 2.49 LINK OG1 THR A 178 CA CA A1007 1555 1555 2.48 LINK O ALA A 281 CA CA A1007 1555 1555 2.42 LINK OE2 GLU A 282 CA CA A1007 1555 1555 2.37 CISPEP 1 SER A 185 PRO A 186 0 -11.27 CISPEP 2 ALA A 187 PRO A 188 0 5.20 CISPEP 3 LEU A 192 PRO A 193 0 -5.48 CISPEP 4 GLY A 292 PRO A 293 0 0.85 CISPEP 5 GLY A 481 PRO A 482 0 9.89 CRYST1 48.271 62.943 183.284 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005456 0.00000 CONECT 196 4730 CONECT 222 4730 CONECT 231 4730 CONECT 249 4730 CONECT 251 4730 CONECT 1045 4730 CONECT 1055 4730 CONECT 3690 3707 CONECT 3707 3690 CONECT 4687 4688 4689 CONECT 4688 4687 CONECT 4689 4687 4690 4691 CONECT 4690 4689 CONECT 4691 4689 4692 CONECT 4692 4691 CONECT 4693 4694 4695 CONECT 4694 4693 CONECT 4695 4693 4696 4697 CONECT 4696 4695 CONECT 4697 4695 4698 CONECT 4698 4697 CONECT 4699 4700 4701 CONECT 4700 4699 CONECT 4701 4699 4702 4703 CONECT 4702 4701 CONECT 4703 4701 4704 CONECT 4704 4703 CONECT 4705 4706 4707 CONECT 4706 4705 CONECT 4707 4705 4708 4709 CONECT 4708 4707 CONECT 4709 4707 4710 CONECT 4710 4709 CONECT 4711 4712 4713 CONECT 4712 4711 CONECT 4713 4711 4714 4715 CONECT 4714 4713 CONECT 4715 4713 4716 CONECT 4716 4715 CONECT 4717 4718 CONECT 4718 4717 4719 CONECT 4719 4718 4720 CONECT 4720 4719 4721 CONECT 4721 4720 4722 CONECT 4722 4721 4723 CONECT 4723 4722 4724 CONECT 4724 4723 4725 CONECT 4725 4724 4726 CONECT 4726 4725 4727 CONECT 4727 4726 4728 CONECT 4728 4727 4729 CONECT 4729 4728 CONECT 4730 196 222 231 249 CONECT 4730 251 1045 1055 MASTER 373 0 9 5 53 0 0 6 5344 2 54 49 END