HEADER OXIDOREDUCTASE 23-JUL-24 9G8H TITLE CRYSTAL STRUCTURE OF A GALACTOSE OXIDASE IN COMPLEX WITH GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.9; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SER-HIS-SER-SER-GLY-ALA; COMPND 8 CHAIN: Q; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDARTHROBACTER SICCITOLERANS; SOURCE 3 ORGANISM_TAXID: 861266; SOURCE 4 GENE: GAOA, ARTSIC4J27_1011; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PSEUDARTHROBACTER SICCITOLERANS; SOURCE 9 ORGANISM_TAXID: 861266; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASES, GALACTOSE OXIDASE, AUXILIARY ACTIVITY 5 FAMILY, KEYWDS 2 BIOCATALYSIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.T.BORGES,T.FRAZAO,C.FRAZAO,L.MARTINS REVDAT 1 06-AUG-25 9G8H 0 JRNL AUTH A.TABORDA,T.FRAZAO,C.FRAZAO,P.T.BORGES,L.MARTINS JRNL TITL UNRAVELING THE CATALYTIC AND STRUCTURAL PROPERTIES OF A NEW JRNL TITL 2 BACTERIAL GALACTOSE OXIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 66.9 REMARK 3 NUMBER OF REFLECTIONS : 21098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.866 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.644 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4686 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6410 ; 1.420 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 7.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 6.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 642 ;13.857 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 728 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3676 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2490 ; 0.917 ; 1.369 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3109 ; 1.551 ; 2.456 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2196 ; 1.391 ; 1.474 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7290 ; 6.412 ;16.770 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 804 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0094 3.3086 22.9955 REMARK 3 T TENSOR REMARK 3 T11: 0.0035 T22: 0.0037 REMARK 3 T33: 0.0340 T12: 0.0010 REMARK 3 T13: -0.0042 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1169 L22: 0.1432 REMARK 3 L33: 0.1520 L12: 0.0557 REMARK 3 L13: 0.0534 L23: 0.0940 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0032 S13: -0.0014 REMARK 3 S21: -0.0048 S22: 0.0127 S23: 0.0089 REMARK 3 S31: -0.0072 S32: 0.0036 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0149 T22: 0.0149 REMARK 3 T33: 0.0149 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9G8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292140246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 58.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM HEPES AND MOPS PH 7.5, REMARK 280 0.03 M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.03 M CALCIUM CHLORIDE REMARK 280 DIHYDRATE, 12.5% (V/V) MPD, 12.5% (W/V) PEG 1000 AND 12.5% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.00250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.19800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.70300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.19800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.00250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.70300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 920 O HOH A 1033 1.33 REMARK 500 O HOH A 910 O HOH A 961 1.68 REMARK 500 O HOH A 904 O HOH A 1053 1.88 REMARK 500 O HOH A 1125 O HOH A 1128 1.94 REMARK 500 SG CYS A 361 CE1 TYR A 405 1.97 REMARK 500 CG2 THR A 390 O HOH A 1103 2.08 REMARK 500 CB ALA A 594 O HOH A 1066 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 161 -18.07 -144.89 REMARK 500 ASN A 217 -168.19 -165.80 REMARK 500 PRO A 276 47.12 -81.76 REMARK 500 SER A 321 -94.10 -119.99 REMARK 500 ALA A 322 -155.99 -158.36 REMARK 500 CYS A 361 38.42 71.92 REMARK 500 VAL A 447 78.46 -118.28 REMARK 500 ASP A 455 41.88 -99.61 REMARK 500 ALA A 504 -127.55 46.72 REMARK 500 THR A 554 -169.57 -105.86 REMARK 500 PHE A 563 14.66 81.66 REMARK 500 PHE A 586 13.68 86.27 REMARK 500 THR A 616 -132.88 -112.03 REMARK 500 LEU A 636 62.59 65.10 REMARK 500 LEU A 645 57.31 -92.40 REMARK 500 THR A 703 -2.98 90.71 REMARK 500 ARG A 709 146.50 -171.28 REMARK 500 THR A 718 -157.19 -120.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 179 TRP A 180 149.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1201 DISTANCE = 6.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 805 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 170 O REMARK 620 2 ASP A 173 OD1 84.7 REMARK 620 3 ASP A 175 O 170.0 95.8 REMARK 620 4 THR A 178 O 84.1 135.0 88.5 REMARK 620 5 THR A 178 OG1 89.1 66.7 82.0 69.7 REMARK 620 6 ALA A 281 O 80.3 141.6 104.9 78.3 147.2 REMARK 620 7 GLU A 282 OE2 99.2 76.4 90.6 148.5 141.2 71.4 REMARK 620 N 1 2 3 4 5 6 DBREF1 9G8H A 144 760 UNP A0A024GZ97_9MICC DBREF2 9G8H A A0A024GZ97 144 760 DBREF 9G8H Q 16 21 PDB 9G8H 9G8H 16 21 SEQRES 1 A 617 SER GLY PRO LEU PRO ARG ASP GLY TRP LEU ALA SER ALA SEQRES 2 A 617 SER ASP GLN GLU THR ALA ASN GLU ASN GLY ARG ALA ALA SEQRES 3 A 617 ASN VAL LEU ASP GLY ASP ALA ALA THR LEU TRP HIS SER SEQRES 4 A 617 ARG TYR SER PRO ALA PRO ALA ALA PRO LEU PRO HIS THR SEQRES 5 A 617 LEU THR ILE ASP MET GLY VAL VAL ASN GLN VAL ALA GLY SEQRES 6 A 617 LEU ARG TYR LEU PRO ARG PHE ASP ASN MET ASN GLY ARG SEQRES 7 A 617 VAL GLY GLY TYR SER ILE HIS ALA SER SER ASN GLY THR SEQRES 8 A 617 SER TRP ASN LEU LEU ALA ARG GLY THR TRP ALA ASP ASN SEQRES 9 A 617 ALA ASP GLU LYS THR VAL THR PHE ALA ALA ALA SER ALA SEQRES 10 A 617 ARG TYR ILE ARG LEU THR ALA SER THR GLU ALA GLY ASN SEQRES 11 A 617 ARG GLY PRO TRP SER SER ALA ALA GLU ILE ASN LEU LEU SEQRES 12 A 617 GLY THR PRO PRO LYS GLY PRO GLY THR TRP SER PRO THR SEQRES 13 A 617 VAL ASN PHE PRO LEU VAL PRO ALA ALA ALA ALA LEU LEU SEQRES 14 A 617 PRO GLY ASN ARG LEU LEU THR TRP SER ALA TYR SER PRO SEQRES 15 A 617 ILE THR PHE GLY GLY GLU THR GLY ILE THR GLN SER ALA SEQRES 16 A 617 ILE LEU ASP LEU ASN THR GLY ALA VAL SER GLN ALA GLU SEQRES 17 A 617 VAL ALA ASN THR GLY HIS ASP MET PHE CYS PRO GLY THR SEQRES 18 A 617 SER LEU LEU PRO ASP GLY ARG ILE LEU VAL SER GLY GLY SEQRES 19 A 617 SER ASN SER GLU LYS THR SER LEU PHE SER PRO ALA THR SEQRES 20 A 617 ASN THR TRP ALA PRO GLY PRO ASP MET ASN VAL GLY ARG SEQRES 21 A 617 GLY TYR GLN SER ASN VAL THR THR SER THR GLY GLU VAL SEQRES 22 A 617 PHE THR LEU GLY GLY SER TRP SER GLY GLY LEU GLY SER SEQRES 23 A 617 LYS HIS GLY GLU ILE TRP SER SER THR GLY GLY TRP ARG SEQRES 24 A 617 PRO LEU PRO ASP VAL PRO VAL ASP SER ILE LEU THR ASP SEQRES 25 A 617 ASP PRO GLY GLY GLU PHE ARG SER ASP ASN HIS ALA TRP SEQRES 26 A 617 LEU PHE SER ALA ALA GLY GLY ARG VAL PHE HIS ALA GLY SEQRES 27 A 617 PRO SER ARG GLU MET ASN TRP ILE SER THR ALA GLY THR SEQRES 28 A 617 GLY SER VAL THR SER ALA GLY THR ARG ALA ASP SER ALA SEQRES 29 A 617 ASP ALA MET ASN GLY ASN ALA VAL MET TYR ASP VAL GLY SEQRES 30 A 617 LYS ILE LEU THR MET GLY GLY ALA PRO GLY TYR ASP ASN SEQRES 31 A 617 SER ASP ALA THR ALA ARG ALA TYR THR ILE ASP ILE ASN SEQRES 32 A 617 ASN GLY VAL ASP VAL ALA ARG THR SER ASP MET ALA VAL SEQRES 33 A 617 SER ARG SER PHE ALA ASN GLY VAL ALA LEU PRO ASP GLY SEQRES 34 A 617 GLN VAL LEU VAL VAL GLY GLY GLN ALA HIS ALA VAL PRO SEQRES 35 A 617 PHE THR ASP THR GLY ALA ARG MET ALA PRO GLU LEU TRP SEQRES 36 A 617 ASN PRO ALA THR GLU GLU TRP THR ALA MET ALA PRO MET SEQRES 37 A 617 ALA VAL PRO ARG THR TYR HIS SER VAL ALA LEU LEU LEU SEQRES 38 A 617 ALA ASP GLY ARG VAL PHE VAL GLY GLY GLY GLY LEU CYS SEQRES 39 A 617 GLY THR CYS THR THR ASN HIS LEU ASP GLY GLU ILE PHE SEQRES 40 A 617 THR PRO PRO TYR LEU LEU ASN ALA ASP GLY SER ALA ARG SEQRES 41 A 617 THR ARG PRO THR ILE VAL ASP ALA PRO ALA THR ALA THR SEQRES 42 A 617 ALA GLY SER LYS ILE SER VAL THR THR GLY SER LYS ILE SEQRES 43 A 617 SER LYS PHE SER LEU MET ARG MET SER SER VAL THR HIS SEQRES 44 A 617 THR VAL ASN THR ASP GLN ARG ARG ILE PRO LEU THR ALA SEQRES 45 A 617 THR GLY THR TYR GLY ASN ASN THR ALA THR LEU THR LEU SEQRES 46 A 617 PRO ALA ASP ARG GLY VAL LEU VAL PRO GLY ALA TYR MET SEQRES 47 A 617 LEU PHE ALA MET ASP GLY ASN GLY VAL PRO SER VAL ALA SEQRES 48 A 617 THR THR ILE GLN ILE SER SEQRES 1 Q 6 SER HIS SER SER GLY ALA HET GAL A 801 12 HET PG4 A 802 13 HET GOL A 803 6 HET PO4 A 804 5 HET CA A 805 1 HET SO4 A 806 5 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GAL C6 H12 O6 FORMUL 4 PG4 C8 H18 O5 FORMUL 5 GOL C3 H8 O3 FORMUL 6 PO4 O4 P 3- FORMUL 7 CA CA 2+ FORMUL 8 SO4 O4 S 2- FORMUL 9 HOH *306(H2 O) HELIX 1 AA1 ARG A 167 LEU A 172 5 6 HELIX 2 AA2 PRO A 448 LEU A 453 5 6 HELIX 3 AA3 GLY A 459 ASP A 464 1 6 HELIX 4 AA4 ALA A 473 GLY A 475 5 3 HELIX 5 AA5 PRO A 652 LEU A 656 5 5 SHEET 1 AA1 5 LEU A 153 ALA A 156 0 SHEET 2 AA1 5 HIS A 194 LEU A 212 -1 O ASP A 199 N LEU A 153 SHEET 3 AA1 5 LYS A 251 ALA A 267 -1 O ALA A 267 N HIS A 194 SHEET 4 AA1 5 GLY A 224 SER A 230 -1 N SER A 230 O TYR A 262 SHEET 5 AA1 5 ASN A 237 THR A 243 -1 O LEU A 239 N ILE A 227 SHEET 1 AA2 3 LEU A 153 ALA A 156 0 SHEET 2 AA2 3 HIS A 194 LEU A 212 -1 O ASP A 199 N LEU A 153 SHEET 3 AA2 3 GLU A 282 THR A 288 -1 O ASN A 284 N ARG A 210 SHEET 1 AA3 2 TRP A 180 HIS A 181 0 SHEET 2 AA3 2 SER A 279 ALA A 280 -1 O ALA A 280 N TRP A 180 SHEET 1 AA4 3 THR A 295 TRP A 296 0 SHEET 2 AA4 3 ASP A 646 THR A 651 -1 O THR A 651 N THR A 295 SHEET 3 AA4 3 VAL A 300 ASN A 301 -1 N VAL A 300 O GLY A 647 SHEET 1 AA5 4 THR A 295 TRP A 296 0 SHEET 2 AA5 4 ASP A 646 THR A 651 -1 O THR A 651 N THR A 295 SHEET 3 AA5 4 VAL A 629 GLY A 633 -1 N VAL A 629 O PHE A 650 SHEET 4 AA5 4 SER A 619 LEU A 623 -1 N VAL A 620 O GLY A 632 SHEET 1 AA6 5 VAL A 347 VAL A 352 0 SHEET 2 AA6 5 THR A 335 ASP A 341 -1 N THR A 335 O VAL A 352 SHEET 3 AA6 5 ARG A 316 TRP A 320 -1 N LEU A 317 O LEU A 340 SHEET 4 AA6 5 ALA A 308 LEU A 312 -1 N ALA A 310 O LEU A 318 SHEET 5 AA6 5 SER A 699 THR A 701 -1 O VAL A 700 N ALA A 309 SHEET 1 AA7 4 GLY A 363 LEU A 366 0 SHEET 2 AA7 4 ILE A 372 SER A 375 -1 O SER A 375 N GLY A 363 SHEET 3 AA7 4 THR A 383 SER A 387 -1 O PHE A 386 N ILE A 372 SHEET 4 AA7 4 THR A 392 PRO A 395 -1 O ALA A 394 N LEU A 385 SHEET 1 AA8 4 SER A 407 THR A 410 0 SHEET 2 AA8 4 VAL A 416 LEU A 419 -1 O PHE A 417 N VAL A 409 SHEET 3 AA8 4 GLY A 432 SER A 436 -1 O TRP A 435 N VAL A 416 SHEET 4 AA8 4 GLY A 440 LEU A 444 -1 O ARG A 442 N ILE A 434 SHEET 1 AA9 4 LEU A 469 SER A 471 0 SHEET 2 AA9 4 VAL A 477 HIS A 479 -1 O PHE A 478 N PHE A 470 SHEET 3 AA9 4 GLU A 485 SER A 490 -1 O ILE A 489 N VAL A 477 SHEET 4 AA9 4 SER A 496 THR A 502 -1 O THR A 498 N TRP A 488 SHEET 1 AB1 4 ASN A 513 ASP A 518 0 SHEET 2 AB1 4 LYS A 521 MET A 525 -1 O LEU A 523 N VAL A 515 SHEET 3 AB1 4 ALA A 540 ASP A 544 -1 O TYR A 541 N THR A 524 SHEET 4 AB1 4 ASP A 550 ARG A 553 -1 O ASP A 550 N ASP A 544 SHEET 1 AB2 2 SER A 534 ASP A 535 0 SHEET 2 AB2 2 HIS A 582 ALA A 583 -1 O ALA A 583 N SER A 534 SHEET 1 AB3 4 SER A 562 ALA A 568 0 SHEET 2 AB3 4 VAL A 574 GLN A 580 -1 O VAL A 577 N ASN A 565 SHEET 3 AB3 4 GLU A 596 TRP A 598 -1 O GLU A 596 N VAL A 576 SHEET 4 AB3 4 TRP A 605 ALA A 607 -1 O THR A 606 N LEU A 597 SHEET 1 AB4 4 ILE A 668 ASP A 670 0 SHEET 2 AB4 4 LYS A 680 THR A 685 -1 O THR A 684 N VAL A 669 SHEET 3 AB4 4 THR A 723 THR A 727 -1 O ALA A 724 N VAL A 683 SHEET 4 AB4 4 THR A 716 GLY A 717 -1 N THR A 716 O THR A 725 SHEET 1 AB5 5 THR A 674 THR A 676 0 SHEET 2 AB5 5 THR A 755 SER A 760 1 O SER A 760 N ALA A 675 SHEET 3 AB5 5 GLY A 738 MET A 745 -1 N LEU A 742 O THR A 755 SHEET 4 AB5 5 LYS A 691 ARG A 696 -1 N LYS A 691 O MET A 745 SHEET 5 AB5 5 ARG A 710 THR A 714 -1 O ILE A 711 N LEU A 694 SSBOND 1 CYS A 637 CYS A 640 1555 1555 2.10 LINK O ASN A 170 CA CA A 805 1555 1555 2.20 LINK OD1 ASP A 173 CA CA A 805 1555 1555 2.49 LINK O ASP A 175 CA CA A 805 1555 1555 2.33 LINK O THR A 178 CA CA A 805 1555 1555 2.60 LINK OG1 THR A 178 CA CA A 805 1555 1555 2.90 LINK O ALA A 281 CA CA A 805 1555 1555 2.42 LINK OE2 GLU A 282 CA CA A 805 1555 1555 2.29 CISPEP 1 SER A 185 PRO A 186 0 -8.87 CISPEP 2 ALA A 187 PRO A 188 0 -2.12 CISPEP 3 LEU A 192 PRO A 193 0 -7.72 CISPEP 4 GLY A 292 PRO A 293 0 -4.07 CISPEP 5 GLY A 481 PRO A 482 0 1.34 CRYST1 48.005 61.406 186.396 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020831 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005365 0.00000 CONECT 191 4582 CONECT 217 4582 CONECT 226 4582 CONECT 244 4582 CONECT 246 4582 CONECT 1027 4582 CONECT 1037 4582 CONECT 3611 3628 CONECT 3628 3611 CONECT 4546 4547 4552 4556 CONECT 4547 4546 4548 4553 CONECT 4548 4547 4549 4554 CONECT 4549 4548 4550 4555 CONECT 4550 4549 4551 4556 CONECT 4551 4550 4557 CONECT 4552 4546 CONECT 4553 4547 CONECT 4554 4548 CONECT 4555 4549 CONECT 4556 4546 4550 CONECT 4557 4551 CONECT 4558 4559 CONECT 4559 4558 4560 CONECT 4560 4559 4561 CONECT 4561 4560 4562 CONECT 4562 4561 4563 CONECT 4563 4562 4564 CONECT 4564 4563 4565 CONECT 4565 4564 4566 CONECT 4566 4565 4567 CONECT 4567 4566 4568 CONECT 4568 4567 4569 CONECT 4569 4568 4570 CONECT 4570 4569 CONECT 4571 4572 4573 CONECT 4572 4571 CONECT 4573 4571 4574 4575 CONECT 4574 4573 CONECT 4575 4573 4576 CONECT 4576 4575 CONECT 4577 4578 4579 4580 4581 CONECT 4578 4577 CONECT 4579 4577 CONECT 4580 4577 CONECT 4581 4577 CONECT 4582 191 217 226 244 CONECT 4582 246 1027 1037 CONECT 4583 4584 4585 4586 4587 CONECT 4584 4583 CONECT 4585 4583 CONECT 4586 4583 CONECT 4587 4583 MASTER 367 0 6 5 53 0 0 6 4885 2 52 49 END