HEADER RECOMBINATION 31-JUL-24 9GBG TITLE PUTATIVE PHAGE RECOMBINASE UVSX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE RECOMBINASE UVSX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRUS PHAGE RECOMBINASE DNA, RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR S.FREITAG-POHL,E.POHL REVDAT 1 18-FEB-26 9GBG 0 JRNL AUTH E.TARRANT,S.FREITAG-POHL,E.POHL JRNL TITL STRUCTURE AND FUNCTION OF TWO PHAGE RECOMBINASES FROM JRNL TITL 2 EXTREME ENVIRONMENTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.926 REMARK 3 FREE R VALUE TEST SET COUNT : 727 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.4940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1845 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83100 REMARK 3 B22 (A**2) : -1.83100 REMARK 3 B33 (A**2) : 5.94100 REMARK 3 B12 (A**2) : -0.91600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.361 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1865 ; 0.006 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 1424 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2553 ; 1.766 ; 1.775 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3317 ; 0.669 ; 1.709 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 8.568 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 4 ; 5.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 191 ;15.423 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2285 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 399 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 461 ; 0.263 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 22 ; 0.129 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1032 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 73 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1143 ;10.208 ;10.390 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1143 ;10.149 ;10.389 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1420 ;12.431 ;18.695 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1421 ;12.430 ;18.692 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 722 ;10.612 ;10.171 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 723 ;10.605 ;10.172 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1133 ;12.968 ;18.758 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1134 ;12.962 ;18.756 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9GBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1292140689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 7.5 -8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.970902 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14778 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.596 REMARK 200 RESOLUTION RANGE LOW (A) : 101.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 1.04500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.7 MG/ML PROTEIN SOLUTION (IN 20 MM REMARK 280 HEPES PH 7.5, 300 MM NACL) COMBINED WITH 0.12 M MONOSACCHARIDES, REMARK 280 0.1 M BUFFER SYSTEM 3 (PH 8.5), 30 % V/V PRECIPITANT MIX 2 REMARK 280 (MORPHEUS SCREEN, MOLECULAR DIMENSIONS INC.)., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.30300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.60600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.45450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.75750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.15150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PHE A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 64 REMARK 465 THR A 65 REMARK 465 GLU A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 THR A 164 REMARK 465 GLU A 165 REMARK 465 GLY A 166 REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 THR A 169 REMARK 465 ARG A 170 REMARK 465 ASP A 171 REMARK 465 MET A 172 REMARK 465 TYR A 203 REMARK 465 ASP A 204 REMARK 465 VAL A 205 REMARK 465 VAL A 206 REMARK 465 GLY A 207 REMARK 465 SER A 208 REMARK 465 TYR A 209 REMARK 465 VAL A 210 REMARK 465 PRO A 211 REMARK 465 MET A 212 REMARK 465 LYS A 213 REMARK 465 GLU A 214 REMARK 465 MET A 215 REMARK 465 GLY A 216 REMARK 465 GLY A 217 REMARK 465 GLY A 218 REMARK 465 SER A 219 REMARK 465 GLY A 220 REMARK 465 LYS A 235 REMARK 465 GLU A 236 REMARK 465 LYS A 237 REMARK 465 ASP A 238 REMARK 465 GLY A 239 REMARK 465 LYS A 240 REMARK 465 GLU A 241 REMARK 465 VAL A 242 REMARK 465 VAL A 243 REMARK 465 GLY A 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ILE A 7 CG1 CG2 CD1 REMARK 470 ILE A 8 CG1 CG2 CD1 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 THR A 11 OG1 CG2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 SER A 17 OG REMARK 470 VAL A 23 CG1 CG2 REMARK 470 ILE A 28 CG1 CG2 CD1 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 SER A 30 OG REMARK 470 ILE A 32 CG1 CG2 CD1 REMARK 470 ILE A 47 CG1 CG2 CD1 REMARK 470 SER A 53 OG REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 SER A 63 OG REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 PRO A 83 CG CD REMARK 470 ASN A 84 CG OD1 ND2 REMARK 470 VAL A 87 CG1 CG2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 MET A 100 CG SD CE REMARK 470 ILE A 101 CG1 CG2 CD1 REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 SER A 108 OG REMARK 470 SER A 109 OG REMARK 470 ILE A 113 CG1 CG2 CD1 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 SER A 126 OG REMARK 470 ILE A 127 CG1 CG2 CD1 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 ILE A 129 CG1 CG2 CD1 REMARK 470 SER A 132 OG REMARK 470 LEU A 134 CG CD1 CD2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 PRO A 137 CG CD REMARK 470 VAL A 138 CG1 CG2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 GLN A 142 CG CD OE1 NE2 REMARK 470 SER A 150 OG REMARK 470 LEU A 151 CG CD1 CD2 REMARK 470 SER A 155 OG REMARK 470 THR A 156 OG1 CG2 REMARK 470 THR A 157 OG1 CG2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 ILE A 160 CG1 CG2 CD1 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 ILE A 177 CG1 CG2 CD1 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 VAL A 184 CG1 CG2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 VAL A 194 CG1 CG2 REMARK 470 ILE A 198 CG1 CG2 CD1 REMARK 470 THR A 202 OG1 CG2 REMARK 470 LEU A 221 CG CD1 CD2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 TYR A 223 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 228 CG1 CG2 CD1 REMARK 470 ILE A 229 CG1 CG2 CD1 REMARK 470 TYR A 230 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 232 OG REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 ASN A 245 CG OD1 ND2 REMARK 470 ILE A 246 CG1 CG2 CD1 REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 ILE A 251 CG1 CG2 CD1 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 ASN A 260 CG OD1 ND2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 SER A 268 OG REMARK 470 TYR A 269 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 LEU A 273 CG CD1 CD2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 VAL A 284 CG1 CG2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 TYR A 286 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 287 CG OD1 OD2 REMARK 470 ILE A 288 CG1 CG2 CD1 REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 GLN A 291 CG CD OE1 NE2 REMARK 470 VAL A 292 CG1 CG2 REMARK 470 SER A 293 OG REMARK 470 THR A 294 OG1 CG2 REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 296 CG1 CG2 CD1 REMARK 470 PRO A 299 CG CD REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 GLN A 304 CG CD OE1 NE2 REMARK 470 TYR A 305 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LEU A 310 CG CD1 CD2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 ASN A 312 CG OD1 ND2 REMARK 470 PRO A 313 CG CD REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 ASP A 320 CG OD1 OD2 REMARK 470 VAL A 321 CG1 CG2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 VAL A 328 CG1 CG2 REMARK 470 SER A 329 OG REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 131 H GLU A 135 1.48 REMARK 500 O PRO A 137 H LYS A 140 1.54 REMARK 500 O ILE A 325 H SER A 329 1.56 REMARK 500 H VAL A 292 O ARG A 295 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 49 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 LEU A 51 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 GLU A 93 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 PRO A 313 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -113.68 -111.18 REMARK 500 SER A 92 -0.34 -143.11 REMARK 500 ASP A 107 81.67 -67.96 REMARK 500 SER A 108 -30.03 -38.63 REMARK 500 SER A 150 96.35 81.09 REMARK 500 SER A 254 136.20 -171.61 REMARK 500 ASN A 260 3.81 82.72 REMARK 500 TYR A 269 90.28 -51.76 REMARK 500 SER A 293 -122.82 41.00 REMARK 500 GLU A 332 43.44 -97.39 REMARK 500 PHE A 333 -43.33 -152.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 156 THR A 157 -147.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 9GBG A 1 334 PDB 9GBG 9GBG 1 334 SEQRES 1 A 334 MET ASP PHE LEU LYS LYS ILE ILE GLU GLU THR GLY ASN SEQRES 2 A 334 GLU TYR ALA SER ILE VAL ALA ASP GLY VAL THR ALA GLY SEQRES 3 A 334 ASP ILE GLU SER PHE ILE ASP THR GLY SER HIS SER LEU SEQRES 4 A 334 ASN ALA LEU LEU SER GLY SER ILE TYR ASP GLY LEU PRO SEQRES 5 A 334 SER ASN LYS ILE THR ALA ILE ALA GLY GLU SER ALA THR SEQRES 6 A 334 GLY LYS THR PHE PHE VAL LEU GLY MET VAL LYS HIS PHE SEQRES 7 A 334 LEU ASP ALA ASN PRO ASN GLY GLY VAL LEU TYR PHE GLU SEQRES 8 A 334 SER GLU SER ALA LEU THR LYS SER MET ILE GLU ASP ARG SEQRES 9 A 334 GLY ILE ASP SER SER ARG MET VAL ILE VAL PRO VAL THR SEQRES 10 A 334 THR VAL GLN GLU PHE ARG THR GLN SER ILE LYS ILE LEU SEQRES 11 A 334 ASP SER TYR LEU GLU GLN PRO VAL GLU LYS ARG GLN PRO SEQRES 12 A 334 LEU PHE CYS ALA LEU ASP SER LEU GLY MET LEU SER THR SEQRES 13 A 334 THR LYS GLU ILE GLU ASP THR THR GLU GLY LYS GLU THR SEQRES 14 A 334 ARG ASP MET THR ARG ALA GLN ILE ILE LYS ALA ALA PHE SEQRES 15 A 334 ARG VAL LEU THR LEU LYS LEU GLY ARG ALA LYS VAL PRO SEQRES 16 A 334 MET VAL ILE THR ASN HIS THR TYR ASP VAL VAL GLY SER SEQRES 17 A 334 TYR VAL PRO MET LYS GLU MET GLY GLY GLY SER GLY LEU SEQRES 18 A 334 LYS TYR ALA ALA SER THR ILE ILE TYR LEU SER LYS LYS SEQRES 19 A 334 LYS GLU LYS ASP GLY LYS GLU VAL VAL GLY ASN ILE VAL SEQRES 20 A 334 LYS CYS LYS ILE GLN LYS SER ARG ILE THR LYS GLU ASN SEQRES 21 A 334 SER SER VAL ASP VAL ARG ILE SER TYR GLY LYS GLY LEU SEQRES 22 A 334 ASP LYS TYR TYR GLY LEU LEU ASP LEU ALA VAL LYS TYR SEQRES 23 A 334 ASP ILE PHE LYS GLN VAL SER THR ARG ILE GLU LEU PRO SEQRES 24 A 334 ASP GLY THR LYS GLN TYR GLY LYS THR ILE LEU GLU ASN SEQRES 25 A 334 PRO GLU LYS TYR PHE THR LYS ASP VAL LEU ASP LYS ILE SEQRES 26 A 334 ASP GLU VAL SER LYS LYS GLU PHE MET FORMUL 2 HOH *11(H2 O) HELIX 1 AA1 ILE A 18 GLY A 22 5 5 HELIX 2 AA2 SER A 36 GLY A 45 1 10 HELIX 3 AA3 LYS A 67 ASN A 82 1 16 HELIX 4 AA4 THR A 97 ARG A 104 1 8 HELIX 5 AA5 ASP A 107 SER A 109 5 3 HELIX 6 AA6 THR A 118 GLN A 136 1 19 HELIX 7 AA7 ARG A 174 LYS A 193 1 20 HELIX 8 AA8 GLY A 278 TYR A 286 1 9 HELIX 9 AA9 GLY A 306 ASN A 312 1 7 HELIX 10 AB1 ASN A 312 PHE A 317 1 6 HELIX 11 AB2 THR A 318 GLU A 332 1 15 SHEET 1 AA1 2 PHE A 31 ILE A 32 0 SHEET 2 AA1 2 LEU A 51 PRO A 52 -1 O LEU A 51 N ILE A 32 SHEET 1 AA2 9 MET A 111 PRO A 115 0 SHEET 2 AA2 9 GLY A 86 GLU A 91 1 N TYR A 89 O VAL A 112 SHEET 3 AA2 9 LEU A 144 ASP A 149 1 O ALA A 147 N PHE A 90 SHEET 4 AA2 9 MET A 196 HIS A 201 1 O THR A 199 N LEU A 148 SHEET 5 AA2 9 ILE A 56 GLY A 61 1 N THR A 57 O MET A 196 SHEET 6 AA2 9 THR A 227 LYS A 233 1 O LEU A 231 N ALA A 60 SHEET 7 AA2 9 ILE A 246 LYS A 253 -1 O GLN A 252 N ILE A 228 SHEET 8 AA2 9 SER A 262 SER A 268 -1 O VAL A 263 N CYS A 249 SHEET 9 AA2 9 GLY A 272 LEU A 273 -1 O GLY A 272 N SER A 268 SHEET 1 AA3 3 LYS A 290 VAL A 292 0 SHEET 2 AA3 3 ARG A 295 GLU A 297 -1 O ARG A 295 N VAL A 292 SHEET 3 AA3 3 LYS A 303 TYR A 305 -1 O GLN A 304 N ILE A 296 CRYST1 116.751 116.751 60.909 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008565 0.004945 0.000000 0.00000 SCALE2 0.000000 0.009890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016418 0.00000 MASTER 502 0 0 11 14 0 0 6 1856 1 0 26 END