HEADER METAL BINDING PROTEIN 01-AUG-24 9GCB TITLE DUF4198 PROTEIN FROM IDEONELLA SAKAIENSIS WITH NI BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICKEL ECF TRANSPORTER, ADDITIONAL PERIPLASMIC COMPONENT COMPND 3 NIKK; COMPND 4 CHAIN: A, C; COMPND 5 SYNONYM: NICKEL ECF TRANSPORTER; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE SEQUENCE LACKS THE NATIVE SIGNAL PEPTIDE AND COMPND 8 PUTATIVE C-TERMINAL DOMAINS. AT THE N-TERMINUS THERE IS HEXAHISTIDINE COMPND 9 TAG FOLLOWED BY A SUMO TAG, WHICH ARE CLEAVED OFF PRIOR TO COMPND 10 CRYSTALLISATION. SEQUENCE PRIOR TO CLEAVAGE: COMPND 11 MGSSHHHHHHGSGLVPRGSASMSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRL COMPND 12 MEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGHDAWVEPGAAGPRLLLGHPD COMPND 13 DSAPVPPEKVRAVYAVDAQGRRLEATRGAAGGALPTSVAGQAAMWVLDVDNGYWSKPAGSTTSVNRPRT COMPND 14 EVPGATSGTHSLKFGKTIVAWGPAVTRPQGLRLEIVPLGADEPRAGATLPVQVLWDGQPLPGARLVREG COMPND 15 APRDTPPVEADAEGRARVPVTGGRQMLTVGRRLPLAGDPRADTVAVSTNLVFTAR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PISCINIBACTER SAKAIENSIS; SOURCE 3 ORGANISM_TAXID: 1547922; SOURCE 4 GENE: ISF6_5495; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPROTEIN, OXYGENASE, PEROXYGENASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.L.FRANCO CAIRO,T.L.R.CORREA,W.A.OFFEN,A.NAIRN,J.WALTON, AUTHOR 2 G.J.DAVIES,P.H.WALTON,S.T.SWEENEY REVDAT 2 29-OCT-25 9GCB 1 JRNL REVDAT 1 10-SEP-25 9GCB 0 JRNL AUTH J.P.L.FRANCO CAIRO,T.L.R.CORREA,W.A.OFFEN,A.K.NAIRN, JRNL AUTH 2 J.WALTON,S.T.SWEENEY,G.J.DAVIES,P.H.WALTON JRNL TITL SIGNAL-STRAPPING AS A PROTEIN-SEQUENCE SEARCH METHOD FOR THE JRNL TITL 2 DISCOVERY OF METALLOPROTEINS. JRNL REF NAT COMMUN V. 16 9244 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 41115942 JRNL DOI 10.1038/S41467-025-64309-X REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.77) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 64.1 REMARK 3 NUMBER OF REFLECTIONS : 44705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.919 REMARK 3 FREE R VALUE TEST SET COUNT : 2199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 264 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.1020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25900 REMARK 3 B22 (A**2) : -0.84500 REMARK 3 B33 (A**2) : 0.72500 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 1.47200 REMARK 3 B23 (A**2) : -0.88600 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3417 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4706 ; 1.751 ; 1.817 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 42 ; 9.515 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;11.655 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2756 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1400 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2184 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 386 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1805 ; 3.196 ; 1.261 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2284 ; 4.696 ; 2.265 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1612 ; 4.558 ; 1.484 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2419 ; 6.508 ; 2.615 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3417 ; 4.193 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 213 NULL REMARK 3 1 C 1 C 213 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED. REMARK 4 REMARK 4 9GCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292140384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44708 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 48.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 64.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 48.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.01700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 34.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA MALONATE, HEPES, JEFFAMINE D2001, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 161 CD NE CZ NH1 NH2 REMARK 470 ARG C 213 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 523 O HOH C 629 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 19 -39.88 -32.89 REMARK 500 ASP A 21 89.56 -158.13 REMARK 500 ASP A 169 -167.10 -79.07 REMARK 500 ASP C 21 94.85 -161.33 REMARK 500 ALA C 136 -161.11 -106.15 REMARK 500 ASP C 169 -167.77 -78.45 REMARK 500 THR C 179 -168.44 -109.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 31 0.08 SIDE CHAIN REMARK 500 ARG A 175 0.08 SIDE CHAIN REMARK 500 ARG A 182 0.17 SIDE CHAIN REMARK 500 ARG C 31 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 630 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 632 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH A 633 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A 634 DISTANCE = 10.62 ANGSTROMS REMARK 525 HOH C 645 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH C 646 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 N REMARK 620 2 HIS A 1 ND1 92.6 REMARK 620 3 HIS A 18 NE2 94.5 97.4 REMARK 620 4 MLI A 303 O9 83.9 175.3 86.1 REMARK 620 5 MLI A 303 O7 174.4 89.8 90.2 93.4 REMARK 620 6 HOH A 474 O 88.5 85.7 175.6 91.0 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 1 N REMARK 620 2 HIS C 1 ND1 90.8 REMARK 620 3 HIS C 18 NE2 94.4 96.8 REMARK 620 4 MLI C 302 O9 93.6 173.7 87.4 REMARK 620 5 MLI C 302 O7 169.3 96.3 92.7 78.8 REMARK 620 6 HOH C 401 O 82.8 164.8 97.3 14.2 88.4 REMARK 620 7 HOH C 537 O 85.8 86.2 176.9 89.6 86.8 79.6 REMARK 620 N 1 2 3 4 5 6 DBREF1 9GCB A 1 213 UNP A0A0K8P871_PISS1 DBREF2 9GCB A A0A0K8P871 24 236 DBREF1 9GCB C 1 213 UNP A0A0K8P871_PISS1 DBREF2 9GCB C A0A0K8P871 24 236 SEQRES 1 A 213 HIS ASP ALA TRP VAL GLU PRO GLY ALA ALA GLY PRO ARG SEQRES 2 A 213 LEU LEU LEU GLY HIS PRO ASP ASP SER ALA PRO VAL PRO SEQRES 3 A 213 PRO GLU LYS VAL ARG ALA VAL TYR ALA VAL ASP ALA GLN SEQRES 4 A 213 GLY ARG ARG LEU GLU ALA THR ARG GLY ALA ALA GLY GLY SEQRES 5 A 213 ALA LEU PRO THR SER VAL ALA GLY GLN ALA ALA MET TRP SEQRES 6 A 213 VAL LEU ASP VAL ASP ASN GLY TYR TRP SER LYS PRO ALA SEQRES 7 A 213 GLY SER THR THR SER VAL ASN ARG PRO ARG THR GLU VAL SEQRES 8 A 213 PRO GLY ALA THR SER GLY THR HIS SER LEU LYS PHE GLY SEQRES 9 A 213 LYS THR ILE VAL ALA TRP GLY PRO ALA VAL THR ARG PRO SEQRES 10 A 213 GLN GLY LEU ARG LEU GLU ILE VAL PRO LEU GLY ALA ASP SEQRES 11 A 213 GLU PRO ARG ALA GLY ALA THR LEU PRO VAL GLN VAL LEU SEQRES 12 A 213 TRP ASP GLY GLN PRO LEU PRO GLY ALA ARG LEU VAL ARG SEQRES 13 A 213 GLU GLY ALA PRO ARG ASP THR PRO PRO VAL GLU ALA ASP SEQRES 14 A 213 ALA GLU GLY ARG ALA ARG VAL PRO VAL THR GLY GLY ARG SEQRES 15 A 213 GLN MET LEU THR VAL GLY ARG ARG LEU PRO LEU ALA GLY SEQRES 16 A 213 ASP PRO ARG ALA ASP THR VAL ALA VAL SER THR ASN LEU SEQRES 17 A 213 VAL PHE THR ALA ARG SEQRES 1 C 213 HIS ASP ALA TRP VAL GLU PRO GLY ALA ALA GLY PRO ARG SEQRES 2 C 213 LEU LEU LEU GLY HIS PRO ASP ASP SER ALA PRO VAL PRO SEQRES 3 C 213 PRO GLU LYS VAL ARG ALA VAL TYR ALA VAL ASP ALA GLN SEQRES 4 C 213 GLY ARG ARG LEU GLU ALA THR ARG GLY ALA ALA GLY GLY SEQRES 5 C 213 ALA LEU PRO THR SER VAL ALA GLY GLN ALA ALA MET TRP SEQRES 6 C 213 VAL LEU ASP VAL ASP ASN GLY TYR TRP SER LYS PRO ALA SEQRES 7 C 213 GLY SER THR THR SER VAL ASN ARG PRO ARG THR GLU VAL SEQRES 8 C 213 PRO GLY ALA THR SER GLY THR HIS SER LEU LYS PHE GLY SEQRES 9 C 213 LYS THR ILE VAL ALA TRP GLY PRO ALA VAL THR ARG PRO SEQRES 10 C 213 GLN GLY LEU ARG LEU GLU ILE VAL PRO LEU GLY ALA ASP SEQRES 11 C 213 GLU PRO ARG ALA GLY ALA THR LEU PRO VAL GLN VAL LEU SEQRES 12 C 213 TRP ASP GLY GLN PRO LEU PRO GLY ALA ARG LEU VAL ARG SEQRES 13 C 213 GLU GLY ALA PRO ARG ASP THR PRO PRO VAL GLU ALA ASP SEQRES 14 C 213 ALA GLU GLY ARG ALA ARG VAL PRO VAL THR GLY GLY ARG SEQRES 15 C 213 GLN MET LEU THR VAL GLY ARG ARG LEU PRO LEU ALA GLY SEQRES 16 C 213 ASP PRO ARG ALA ASP THR VAL ALA VAL SER THR ASN LEU SEQRES 17 C 213 VAL PHE THR ALA ARG HET NI A 301 1 HET MLI A 302 7 HET MLI A 303 7 HET NI C 301 1 HET MLI C 302 7 HET MLI C 303 7 HETNAM NI NICKEL (II) ION HETNAM MLI MALONATE ION FORMUL 3 NI 2(NI 2+) FORMUL 4 MLI 4(C3 H2 O4 2-) FORMUL 9 HOH *480(H2 O) HELIX 1 AA1 PRO A 26 GLU A 28 5 3 HELIX 2 AA2 PRO A 55 GLN A 61 1 7 HELIX 3 AA3 PRO A 87 VAL A 91 5 5 HELIX 4 AA4 GLY A 111 ARG A 116 5 6 HELIX 5 AA5 PRO C 26 GLU C 28 5 3 HELIX 6 AA6 PRO C 55 GLY C 60 1 6 HELIX 7 AA7 PRO C 87 VAL C 91 5 5 HELIX 8 AA8 GLY C 111 ARG C 116 5 6 SHEET 1 AA1 3 ASP A 2 GLY A 8 0 SHEET 2 AA1 3 GLY A 11 HIS A 18 -1 O ARG A 13 N GLU A 6 SHEET 3 AA1 3 ASP A 21 PRO A 24 -1 O ALA A 23 N LEU A 16 SHEET 1 AA2 8 ARG A 42 GLU A 44 0 SHEET 2 AA2 8 VAL A 30 ASP A 37 -1 N ALA A 35 O LEU A 43 SHEET 3 AA2 8 ALA A 62 TRP A 74 -1 O ALA A 63 N VAL A 36 SHEET 4 AA2 8 THR A 98 ILE A 107 -1 O LYS A 102 N VAL A 69 SHEET 5 AA2 8 THR A 201 THR A 211 1 O VAL A 209 N ILE A 107 SHEET 6 AA2 8 ARG A 182 PRO A 192 -1 N ARG A 189 O VAL A 204 SHEET 7 AA2 8 ARG A 153 ARG A 156 -1 N VAL A 155 O THR A 186 SHEET 8 AA2 8 VAL A 166 GLU A 167 -1 O VAL A 166 N LEU A 154 SHEET 1 AA3 3 LEU A 122 PRO A 126 0 SHEET 2 AA3 3 THR A 137 TRP A 144 -1 O GLN A 141 N VAL A 125 SHEET 3 AA3 3 GLN A 147 PRO A 148 -1 O GLN A 147 N TRP A 144 SHEET 1 AA4 3 LEU A 122 PRO A 126 0 SHEET 2 AA4 3 THR A 137 TRP A 144 -1 O GLN A 141 N VAL A 125 SHEET 3 AA4 3 ARG A 173 PRO A 177 -1 O VAL A 176 N LEU A 138 SHEET 1 AA5 3 ASP C 2 GLY C 8 0 SHEET 2 AA5 3 GLY C 11 HIS C 18 -1 O GLY C 17 N ASP C 2 SHEET 3 AA5 3 ASP C 21 PRO C 24 -1 O ALA C 23 N LEU C 16 SHEET 1 AA6 8 ARG C 42 GLU C 44 0 SHEET 2 AA6 8 VAL C 30 ASP C 37 -1 N ALA C 35 O LEU C 43 SHEET 3 AA6 8 ALA C 62 TRP C 74 -1 O ALA C 63 N VAL C 36 SHEET 4 AA6 8 THR C 98 ILE C 107 -1 O LYS C 102 N VAL C 69 SHEET 5 AA6 8 THR C 201 THR C 211 1 O VAL C 209 N ILE C 107 SHEET 6 AA6 8 ARG C 182 PRO C 192 -1 N LEU C 191 O VAL C 202 SHEET 7 AA6 8 ARG C 153 ARG C 156 -1 N VAL C 155 O THR C 186 SHEET 8 AA6 8 VAL C 166 GLU C 167 -1 O VAL C 166 N LEU C 154 SHEET 1 AA7 3 LEU C 122 PRO C 126 0 SHEET 2 AA7 3 THR C 137 TRP C 144 -1 O GLN C 141 N VAL C 125 SHEET 3 AA7 3 GLN C 147 PRO C 148 -1 O GLN C 147 N TRP C 144 SHEET 1 AA8 3 LEU C 122 PRO C 126 0 SHEET 2 AA8 3 THR C 137 TRP C 144 -1 O GLN C 141 N VAL C 125 SHEET 3 AA8 3 ARG C 173 PRO C 177 -1 O ALA C 174 N VAL C 140 LINK N HIS A 1 NI NI A 301 1555 1555 2.25 LINK ND1 HIS A 1 NI NI A 301 1555 1555 2.10 LINK NE2 HIS A 18 NI NI A 301 1555 1555 2.12 LINK NI NI A 301 O9 MLI A 303 1555 1555 2.03 LINK NI NI A 301 O7 MLI A 303 1555 1555 2.15 LINK NI NI A 301 O HOH A 474 1555 1555 1.98 LINK N HIS C 1 NI NI C 301 1555 1555 2.23 LINK ND1 HIS C 1 NI NI C 301 1555 1555 2.12 LINK NE2 HIS C 18 NI NI C 301 1555 1555 2.12 LINK NI NI C 301 O9 MLI C 302 1555 1555 2.02 LINK NI NI C 301 O7 MLI C 302 1555 1555 2.07 LINK NI NI C 301 O HOH C 401 1555 1555 2.41 LINK NI NI C 301 O HOH C 537 1555 1555 2.14 CRYST1 43.532 47.468 49.452 81.42 81.50 83.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022972 -0.002577 -0.003113 0.00000 SCALE2 0.000000 0.021199 -0.002889 0.00000 SCALE3 0.000000 0.000000 0.020635 0.00000 CONECT 1 3298 CONECT 7 3298 CONECT 134 3298 CONECT 1617 3313 CONECT 1623 3313 CONECT 1750 3313 CONECT 3298 1 7 134 3310 CONECT 3298 3312 3401 CONECT 3299 3300 3301 CONECT 3300 3299 3302 3303 CONECT 3301 3299 3304 3305 CONECT 3302 3300 CONECT 3303 3300 CONECT 3304 3301 CONECT 3305 3301 CONECT 3306 3307 3308 CONECT 3307 3306 3309 3310 CONECT 3308 3306 3311 3312 CONECT 3309 3307 CONECT 3310 3298 3307 CONECT 3311 3308 CONECT 3312 3298 3308 CONECT 3313 1617 1623 1750 3318 CONECT 3313 3320 3563 3699 CONECT 3314 3315 3316 CONECT 3315 3314 3317 3318 CONECT 3316 3314 3319 3320 CONECT 3317 3315 CONECT 3318 3313 3315 CONECT 3319 3316 CONECT 3320 3313 3316 CONECT 3321 3322 3323 CONECT 3322 3321 3324 3325 CONECT 3323 3321 3326 3327 CONECT 3324 3322 CONECT 3325 3322 CONECT 3326 3323 CONECT 3327 3323 CONECT 3401 3298 CONECT 3563 3313 CONECT 3699 3313 MASTER 344 0 6 8 34 0 0 6 3622 2 41 34 END