HEADER METAL BINDING PROTEIN 01-AUG-24 9GCE TITLE ANG-1 DOMAIN OF THE HUPE/UREJ-2 PROTEIN FROM RHODOBACTERACEAE TITLE 2 BACTERIUM RBANG-1A WITH CU BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DUFX-1A DOMAIN WITHOUT N-TERMINAL SIGNAL SEQUENCE, AND COMPND 6 WITH N-TERMINAL HEXAHISTIDINE AND SUMO TAGS, AND C-TERMINAL STREPII COMPND 7 TAG. SEQUENCE PRIOR TO CLEAVAGE: COMPND 8 MGSSHHHHHHGSGLVPRGSASMSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRL COMPND 9 MEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGHEVRPAIGDLETEGAELSL COMPND 10 VLRLTAEPLLAGVDLEGVEDTNDTAGSGAVDQLRALATADLMARVDAEQGRLLGPVSVTSGGTAVPLTL COMPND 11 DRVEVDDIENPELPRETRLFLSGTLPAGAETLVVTWPAEYGTLILRQQGVEAGFTGYLTGGPSEPITLA COMPND 12 GGDAWSHPQFEK SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTERACEAE BACTERIUM PD-2; SOURCE 3 ORGANISM_TAXID: 1169855; SOURCE 4 GENE: P279_24175; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPROTEIN, OXYGENASE, PEROXYGENASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.L.FRANCO CAIRO,T.L.R.CORREA,W.A.OFFEN,A.NAIRN,J.WALTON, AUTHOR 2 G.J.DAVIES,P.H.WALTON,S.T.SWEENEY REVDAT 2 29-OCT-25 9GCE 1 JRNL REVDAT 1 10-SEP-25 9GCE 0 JRNL AUTH J.P.L.FRANCO CAIRO,T.L.R.CORREA,W.A.OFFEN,A.K.NAIRN, JRNL AUTH 2 J.WALTON,S.T.SWEENEY,G.J.DAVIES,P.H.WALTON JRNL TITL SIGNAL-STRAPPING AS A PROTEIN-SEQUENCE SEARCH METHOD FOR THE JRNL TITL 2 DISCOVERY OF METALLOPROTEINS. JRNL REF NAT COMMUN V. 16 9244 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 41115942 JRNL DOI 10.1038/S41467-025-64309-X REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.77) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.881 REMARK 3 FREE R VALUE TEST SET COUNT : 554 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.60900 REMARK 3 B22 (A**2) : 1.60900 REMARK 3 B33 (A**2) : -5.21900 REMARK 3 B12 (A**2) : 0.80400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.320 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1236 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1132 ; 0.005 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1692 ; 2.371 ; 1.813 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2618 ; 1.093 ; 1.710 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 169 ; 8.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 7 ; 7.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 173 ;12.193 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 205 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1488 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 244 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 180 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 30 ; 0.117 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 572 ; 0.136 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 41 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.094 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 676 ; 5.725 ; 4.460 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 677 ; 5.721 ; 4.463 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 845 ; 6.834 ; 8.043 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 846 ; 6.831 ; 8.045 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 560 ; 7.085 ; 4.605 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 559 ; 7.045 ; 4.607 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 847 ; 8.484 ; 8.372 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 848 ; 8.479 ; 8.374 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9390 -24.0101 7.1014 REMARK 3 T TENSOR REMARK 3 T11: 0.0060 T22: 0.1154 REMARK 3 T33: 0.1914 T12: 0.0026 REMARK 3 T13: 0.0155 T23: -0.0953 REMARK 3 L TENSOR REMARK 3 L11: 3.9887 L22: 1.2448 REMARK 3 L33: 3.1204 L12: 1.4688 REMARK 3 L13: 2.4796 L23: 0.8174 REMARK 3 S TENSOR REMARK 3 S11: -0.0988 S12: -0.4939 S13: 0.2119 REMARK 3 S21: -0.0508 S22: -0.1803 S23: 0.1734 REMARK 3 S31: -0.0321 S32: -0.5542 S33: 0.2791 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS. THERE IS A CU ATOM IN THE HISTIDINE BRACE AT REMARK 3 HIS1. IT IS NOT POSSIBLE TO DISTINGUISH BETWEEN CU AND ZN (FROM REMARK 3 THE PROTEIN SOLUTION AND CRYSTALLISATION CONDITION RESPECTIVELY) REMARK 3 AT 3 FURTHER ANOMALOUS DIFFERENCE MAP PEAK POSITIONS. THESE HAVE REMARK 3 BEEN MODELLED WITH ZN. REMARK 4 REMARK 4 9GCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292140584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 46.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 46.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 16.10 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 28.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ZN SULFATE, MES, POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 550., PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.30200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.15100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.15100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.30200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 64 CG1 CG2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 GLN A 166 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 22 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 22 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 39 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 90 147.34 -172.12 REMARK 500 ALA A 115 126.09 -39.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 204 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 N REMARK 620 2 HIS A 1 ND1 97.8 REMARK 620 3 ASN A 41 OD1 101.1 159.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 39 OD2 25.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 92 OE2 REMARK 620 2 GLU A 97 OE2 73.5 REMARK 620 3 HIS A 164 NE2 106.0 155.2 REMARK 620 4 GLU A 168 OE2 109.4 156.5 3.7 REMARK 620 N 1 2 3 DBREF 9GCE A 1 161 UNP X6KU28 X6KU28_9RHOB 21 181 SEQADV 9GCE TRP A 162 UNP X6KU28 EXPRESSION TAG SEQADV 9GCE SER A 163 UNP X6KU28 EXPRESSION TAG SEQADV 9GCE HIS A 164 UNP X6KU28 EXPRESSION TAG SEQADV 9GCE PRO A 165 UNP X6KU28 EXPRESSION TAG SEQADV 9GCE GLN A 166 UNP X6KU28 EXPRESSION TAG SEQADV 9GCE PHE A 167 UNP X6KU28 EXPRESSION TAG SEQADV 9GCE GLU A 168 UNP X6KU28 EXPRESSION TAG SEQADV 9GCE LYS A 169 UNP X6KU28 EXPRESSION TAG SEQRES 1 A 169 HIS GLU VAL ARG PRO ALA ILE GLY ASP LEU GLU THR GLU SEQRES 2 A 169 GLY ALA GLU LEU SER LEU VAL LEU ARG LEU THR ALA GLU SEQRES 3 A 169 PRO LEU LEU ALA GLY VAL ASP LEU GLU GLY VAL GLU ASP SEQRES 4 A 169 THR ASN ASP THR ALA GLY SER GLY ALA VAL ASP GLN LEU SEQRES 5 A 169 ARG ALA LEU ALA THR ALA ASP LEU MET ALA ARG VAL ASP SEQRES 6 A 169 ALA GLU GLN GLY ARG LEU LEU GLY PRO VAL SER VAL THR SEQRES 7 A 169 SER GLY GLY THR ALA VAL PRO LEU THR LEU ASP ARG VAL SEQRES 8 A 169 GLU VAL ASP ASP ILE GLU ASN PRO GLU LEU PRO ARG GLU SEQRES 9 A 169 THR ARG LEU PHE LEU SER GLY THR LEU PRO ALA GLY ALA SEQRES 10 A 169 GLU THR LEU VAL VAL THR TRP PRO ALA GLU TYR GLY THR SEQRES 11 A 169 LEU ILE LEU ARG GLN GLN GLY VAL GLU ALA GLY PHE THR SEQRES 12 A 169 GLY TYR LEU THR GLY GLY PRO SER GLU PRO ILE THR LEU SEQRES 13 A 169 ALA GLY GLY ASP ALA TRP SER HIS PRO GLN PHE GLU LYS HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET CU A 204 1 HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION FORMUL 2 ZN 3(ZN 2+) FORMUL 5 CU CU 2+ FORMUL 6 HOH *31(H2 O) HELIX 1 AA1 THR A 24 GLY A 31 1 8 HELIX 2 AA2 ASP A 39 THR A 43 5 5 HELIX 3 AA3 GLY A 45 LEU A 55 1 11 HELIX 4 AA4 ALA A 56 GLU A 67 1 12 HELIX 5 AA5 GLU A 67 GLY A 73 1 7 HELIX 6 AA6 PRO A 125 GLY A 129 5 5 SHEET 1 AA1 6 THR A 87 VAL A 93 0 SHEET 2 AA1 6 THR A 105 THR A 112 -1 O PHE A 108 N ASP A 89 SHEET 3 AA1 6 GLU A 16 LEU A 23 -1 N LEU A 23 O THR A 105 SHEET 4 AA1 6 ALA A 6 GLU A 13 -1 N ILE A 7 O ARG A 22 SHEET 5 AA1 6 LEU A 131 GLN A 135 1 O ARG A 134 N GLY A 8 SHEET 6 AA1 6 THR A 143 LEU A 146 -1 O LEU A 146 N LEU A 131 SHEET 1 AA2 4 THR A 82 VAL A 84 0 SHEET 2 AA2 4 SER A 76 SER A 79 -1 N VAL A 77 O VAL A 84 SHEET 3 AA2 4 THR A 119 TRP A 124 -1 O THR A 123 N SER A 76 SHEET 4 AA2 4 GLY A 149 PRO A 150 -1 O GLY A 149 N TRP A 124 SHEET 1 AA3 4 THR A 82 VAL A 84 0 SHEET 2 AA3 4 SER A 76 SER A 79 -1 N VAL A 77 O VAL A 84 SHEET 3 AA3 4 THR A 119 TRP A 124 -1 O THR A 123 N SER A 76 SHEET 4 AA3 4 ILE A 154 THR A 155 -1 O ILE A 154 N LEU A 120 LINK N HIS A 1 CU CU A 204 1555 1555 2.05 LINK ND1 HIS A 1 CU CU A 204 1555 1555 2.01 LINK OE1 GLU A 11 ZN ZN A 201 1555 1555 2.31 LINK OD2 ASP A 33 ZN ZN A 202 1555 1555 2.05 LINK OD2 ASP A 39 ZN ZN A 201 1555 4545 2.53 LINK OD1 ASN A 41 CU CU A 204 1555 1555 2.68 LINK OE2 GLU A 92 ZN ZN A 203 1555 1555 1.88 LINK OE2 GLU A 97 ZN ZN A 203 1555 6554 1.93 LINK NE2 HIS A 164 ZN ZN A 203 1555 3655 2.51 LINK OE2 GLU A 168 ZN ZN A 203 1555 3655 2.56 CRYST1 79.593 79.593 63.453 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012564 0.007254 0.000000 0.00000 SCALE2 0.000000 0.014508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015760 0.00000 CONECT 1 2347 CONECT 7 2347 CONECT 134 2344 CONECT 450 2345 CONECT 550 2347 CONECT 1224 2346 CONECT 2344 134 CONECT 2345 450 CONECT 2346 1224 CONECT 2347 1 7 550 MASTER 359 0 4 6 14 0 0 6 1239 1 10 13 END