HEADER CELL CYCLE 27-AUG-24 9GLA TITLE CRYSTAL STRUCTURE OF A CDK2-BASED CDK7 MIMIC WITH INHIBITOR SY5609 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELL DIVISION PROTEIN KINASE 2,P33 PROTEIN KINASE; COMPND 5 EC: 2.7.11.22; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CDK2 CONTAINING 12 ACTIVE-SITE MUTATIONS MIMICKING COMPND 8 CDK7: E8D, K9F, I10L, T14Q, Y15F, V64I, L83M, H84E, Q85T, K88E, K89V, COMPND 9 Q131N; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYCLIN-A2; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: CYCLIN-A,CYCLIN A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK2, CDKN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CCNA2, CCN1, CCNA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYCLIN-DEPENDENT KINASE, INHIBITOR, SY5609, SELECTIVITY, STRUCTURE- KEYWDS 2 ASSISTED INHIBITOR DESIGN, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR J.SKERLOVA,V.KREJCIRIKOVA,P.REZACOVA REVDAT 1 02-APR-25 9GLA 0 JRNL AUTH J.SKERLOVA,V.KREJCIRIKOVA,M.PERINA,V.VOJACKOVA,M.FABRY, JRNL AUTH 2 V.KRYSTOF,R.JORDA,P.REZACOVA JRNL TITL CDK2-BASED CDK7 MIMIC AS A TOOL FOR STRUCTURAL ANALYSIS: JRNL TITL 2 BIOCHEMICAL VALIDATION AND CRYSTAL STRUCTURE WITH SY5609. JRNL REF INT.J.BIOL.MACROMOL. V. 294 39117 2025 JRNL REFN ISSN 0141-8130 JRNL PMID 39733900 JRNL DOI 10.1016/J.IJBIOMAC.2024.139117 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 32030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1685 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2112 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.5790 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.5720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.40000 REMARK 3 B22 (A**2) : 5.49000 REMARK 3 B33 (A**2) : -2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4687 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4486 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6388 ; 1.349 ; 1.664 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10363 ; 0.822 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 6.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 23 ; 3.034 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;17.143 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5351 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1040 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2254 ; 3.747 ; 5.112 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2254 ; 3.744 ; 5.112 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2832 ; 5.726 ; 9.213 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2833 ; 5.726 ; 9.215 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2433 ; 4.576 ; 5.691 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2434 ; 4.575 ; 5.694 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3556 ; 7.385 ;10.226 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5251 ; 9.618 ;48.340 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5243 ; 9.623 ;48.350 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9GLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292141201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 48.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.32200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SUCCINIC ACID PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.77700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.77700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.96850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.89300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.96850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.89300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.77700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.96850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.89300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.77700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.96850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.89300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 39 REMARK 465 HIS A 295 REMARK 465 LEU A 296 REMARK 465 ARG A 297 REMARK 465 LEU A 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 72 -165.97 -117.52 REMARK 500 THR A 72 -165.97 -115.78 REMARK 500 ASN A 74 48.73 39.82 REMARK 500 LYS A 75 122.04 -174.09 REMARK 500 ASP A 127 37.29 -146.19 REMARK 500 ASP A 145 75.50 58.88 REMARK 500 GLU A 162 77.54 -69.34 REMARK 500 VAL A 164 133.57 71.55 REMARK 500 SER A 181 -146.08 -146.57 REMARK 500 TRP B 372 101.58 -5.96 REMARK 500 ASN B 415 156.95 -47.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 200 O REMARK 620 2 GLN B 203 O 83.5 REMARK 620 3 ILE B 206 O 104.9 87.9 REMARK 620 N 1 2 DBREF 9GLA A 1 298 UNP P24941 CDK2_HUMAN 1 298 DBREF 9GLA B 175 432 UNP P20248 CCNA2_HUMAN 175 432 SEQADV 9GLA ASP A 8 UNP P24941 GLU 8 ENGINEERED MUTATION SEQADV 9GLA PHE A 9 UNP P24941 LYS 9 ENGINEERED MUTATION SEQADV 9GLA LEU A 10 UNP P24941 ILE 10 ENGINEERED MUTATION SEQADV 9GLA GLN A 14 UNP P24941 THR 14 ENGINEERED MUTATION SEQADV 9GLA PHE A 15 UNP P24941 TYR 15 ENGINEERED MUTATION SEQADV 9GLA ILE A 64 UNP P24941 VAL 64 ENGINEERED MUTATION SEQADV 9GLA MET A 83 UNP P24941 LEU 83 ENGINEERED MUTATION SEQADV 9GLA GLU A 84 UNP P24941 HIS 84 ENGINEERED MUTATION SEQADV 9GLA THR A 85 UNP P24941 GLN 85 ENGINEERED MUTATION SEQADV 9GLA GLU A 88 UNP P24941 LYS 88 ENGINEERED MUTATION SEQADV 9GLA VAL A 89 UNP P24941 LYS 89 ENGINEERED MUTATION SEQADV 9GLA ASN A 131 UNP P24941 GLN 131 ENGINEERED MUTATION SEQRES 1 A 298 MET GLU ASN PHE GLN LYS VAL ASP PHE LEU GLY GLU GLY SEQRES 2 A 298 GLN PHE GLY VAL VAL TYR LYS ALA ARG ASN LYS LEU THR SEQRES 3 A 298 GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU ASP THR SEQRES 4 A 298 GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG GLU ILE SEQRES 5 A 298 SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE ILE LYS SEQRES 6 A 298 LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU TYR LEU SEQRES 7 A 298 VAL PHE GLU PHE MET GLU THR ASP LEU GLU VAL PHE MET SEQRES 8 A 298 ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO LEU ILE SEQRES 9 A 298 LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU ALA PHE SEQRES 10 A 298 CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 11 A 298 ASN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE LYS LEU SEQRES 12 A 298 ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL PRO VAL SEQRES 13 A 298 ARG THR TYR TPO HIS GLU VAL VAL THR LEU TRP TYR ARG SEQRES 14 A 298 ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SER THR SEQRES 15 A 298 ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE ALA GLU SEQRES 16 A 298 MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SER GLU SEQRES 17 A 298 ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU GLY THR SEQRES 18 A 298 PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER MET PRO SEQRES 19 A 298 ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG GLN ASP SEQRES 20 A 298 PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP GLY ARG SEQRES 21 A 298 SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO ASN LYS SEQRES 22 A 298 ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO PHE PHE SEQRES 23 A 298 GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG LEU SEQRES 1 B 258 VAL PRO ASP TYR HIS GLU ASP ILE HIS THR TYR LEU ARG SEQRES 2 B 258 GLU MET GLU VAL LYS CYS LYS PRO LYS VAL GLY TYR MET SEQRES 3 B 258 LYS LYS GLN PRO ASP ILE THR ASN SER MET ARG ALA ILE SEQRES 4 B 258 LEU VAL ASP TRP LEU VAL GLU VAL GLY GLU GLU TYR LYS SEQRES 5 B 258 LEU GLN ASN GLU THR LEU HIS LEU ALA VAL ASN TYR ILE SEQRES 6 B 258 ASP ARG PHE LEU SER SER MET SER VAL LEU ARG GLY LYS SEQRES 7 B 258 LEU GLN LEU VAL GLY THR ALA ALA MET LEU LEU ALA SER SEQRES 8 B 258 LYS PHE GLU GLU ILE TYR PRO PRO GLU VAL ALA GLU PHE SEQRES 9 B 258 VAL TYR ILE THR ASP ASP THR TYR THR LYS LYS GLN VAL SEQRES 10 B 258 LEU ARG MET GLU HIS LEU VAL LEU LYS VAL LEU THR PHE SEQRES 11 B 258 ASP LEU ALA ALA PRO THR VAL ASN GLN PHE LEU THR GLN SEQRES 12 B 258 TYR PHE LEU HIS GLN GLN PRO ALA ASN CYS LYS VAL GLU SEQRES 13 B 258 SER LEU ALA MET PHE LEU GLY GLU LEU SER LEU ILE ASP SEQRES 14 B 258 ALA ASP PRO TYR LEU LYS TYR LEU PRO SER VAL ILE ALA SEQRES 15 B 258 GLY ALA ALA PHE HIS LEU ALA LEU TYR THR VAL THR GLY SEQRES 16 B 258 GLN SER TRP PRO GLU SER LEU ILE ARG LYS THR GLY TYR SEQRES 17 B 258 THR LEU GLU SER LEU LYS PRO CYS LEU MET ASP LEU HIS SEQRES 18 B 258 GLN THR TYR LEU LYS ALA PRO GLN HIS ALA GLN GLN SER SEQRES 19 B 258 ILE ARG GLU LYS TYR LYS ASN SER LYS TYR HIS GLY VAL SEQRES 20 B 258 SER LEU LEU ASN PRO PRO GLU THR LEU ASN LEU MODRES 9GLA TPO A 160 THR MODIFIED RESIDUE HET TPO A 160 11 HET YNK A 301 34 HET SGM B 501 6 HET NA B 502 1 HET NA B 503 1 HETNAM TPO PHOSPHOTHREONINE HETNAM YNK 7-DIMETHYLPHOSPHORYL-3-[2-[[(3~{S})-6,6- HETNAM 2 YNK DIMETHYLPIPERIDIN-3-YL]AMINO]-5-(TRIFLUOROMETHYL) HETNAM 3 YNK PYRIMIDIN-4-YL]-1~{H}-INDOLE-6-CARBONITRILE HETNAM SGM MONOTHIOGLYCEROL HETNAM NA SODIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 YNK C23 H26 F3 N6 O P FORMUL 4 SGM C3 H8 O2 S FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *105(H2 O) HELIX 1 AA1 PRO A 45 LYS A 56 1 12 HELIX 2 AA2 LEU A 87 ALA A 93 1 7 HELIX 3 AA3 PRO A 100 HIS A 121 1 22 HELIX 4 AA4 LYS A 129 ASN A 131 5 3 HELIX 5 AA5 THR A 165 ARG A 169 5 5 HELIX 6 AA6 ALA A 170 LEU A 175 1 6 HELIX 7 AA7 THR A 182 ARG A 199 1 18 HELIX 8 AA8 SER A 207 GLY A 220 1 14 HELIX 9 AA9 GLY A 229 MET A 233 5 5 HELIX 10 AB1 ASP A 247 VAL A 252 1 6 HELIX 11 AB2 ASP A 256 LEU A 267 1 12 HELIX 12 AB3 SER A 276 ALA A 282 1 7 HELIX 13 AB4 HIS A 283 GLN A 287 5 5 HELIX 14 AB5 TYR B 178 CYS B 193 1 16 HELIX 15 AB6 GLY B 198 GLN B 203 5 6 HELIX 16 AB7 THR B 207 TYR B 225 1 19 HELIX 17 AB8 GLN B 228 SER B 244 1 17 HELIX 18 AB9 LEU B 249 GLY B 251 5 3 HELIX 19 AC1 LYS B 252 GLU B 269 1 18 HELIX 20 AC2 GLU B 274 THR B 282 1 9 HELIX 21 AC3 THR B 287 LEU B 302 1 16 HELIX 22 AC4 THR B 310 LEU B 320 1 11 HELIX 23 AC5 ASN B 326 LEU B 341 1 16 HELIX 24 AC6 ASP B 343 LEU B 348 1 6 HELIX 25 AC7 LEU B 351 GLY B 369 1 19 HELIX 26 AC8 PRO B 373 GLY B 381 1 9 HELIX 27 AC9 LEU B 384 SER B 386 5 3 HELIX 28 AD1 LEU B 387 LYS B 400 1 14 HELIX 29 AD2 ALA B 401 HIS B 404 5 4 HELIX 30 AD3 GLN B 407 TYR B 413 1 7 HELIX 31 AD4 LYS B 414 HIS B 419 5 6 HELIX 32 AD5 GLY B 420 LEU B 424 5 5 SHEET 1 AA1 5 PHE A 4 GLU A 12 0 SHEET 2 AA1 5 GLY A 16 ASN A 23 -1 O LYS A 20 N ASP A 8 SHEET 3 AA1 5 VAL A 29 ILE A 35 -1 O LYS A 34 N VAL A 17 SHEET 4 AA1 5 LYS A 75 GLU A 81 -1 O LEU A 76 N ILE A 35 SHEET 5 AA1 5 LEU A 66 THR A 72 -1 N LEU A 67 O VAL A 79 SHEET 1 AA2 3 THR A 85 ASP A 86 0 SHEET 2 AA2 3 LEU A 133 ILE A 135 -1 O ILE A 135 N THR A 85 SHEET 3 AA2 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 SHEET 1 AA3 2 VAL A 123 LEU A 124 0 SHEET 2 AA3 2 ARG A 150 ALA A 151 -1 O ARG A 150 N LEU A 124 SSBOND 1 CYS B 327 CYS B 327 1555 4555 2.11 LINK C TYR A 159 N TPO A 160 1555 1555 1.34 LINK C TPO A 160 N HIS A 161 1555 1555 1.34 LINK SG CYS B 193 S1 SGM B 501 1555 1555 2.06 LINK O MET B 200 NA NA B 503 1555 1555 2.62 LINK O GLN B 203 NA NA B 503 1555 1555 2.78 LINK O ILE B 206 NA NA B 503 1555 1555 2.51 LINK OE1 GLN B 317 NA NA B 502 1555 1555 3.05 CISPEP 1 VAL A 154 PRO A 155 0 -4.15 CISPEP 2 ASP B 345 PRO B 346 0 4.78 CRYST1 71.937 109.786 163.554 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013901 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006114 0.00000 CONECT 1267 1277 CONECT 1277 1267 1278 CONECT 1278 1277 1279 1286 CONECT 1279 1278 1280 1281 CONECT 1280 1279 CONECT 1281 1279 1282 CONECT 1282 1281 1283 1284 1285 CONECT 1283 1282 CONECT 1284 1282 CONECT 1285 1282 CONECT 1286 1278 1287 1288 CONECT 1287 1286 CONECT 1288 1286 CONECT 2559 4562 CONECT 2611 4564 CONECT 2637 4564 CONECT 2661 4564 CONECT 3572 4563 CONECT 4523 4524 CONECT 4524 4523 4525 4542 4543 CONECT 4525 4524 CONECT 4526 4527 4542 CONECT 4527 4526 4528 4544 CONECT 4528 4527 4543 CONECT 4529 4544 4545 4546 CONECT 4530 4531 4545 CONECT 4531 4530 4532 4541 CONECT 4532 4531 4533 4546 CONECT 4533 4532 4540 4547 CONECT 4534 4535 4547 CONECT 4535 4534 4540 4548 CONECT 4536 4537 4538 4548 CONECT 4537 4536 4549 CONECT 4538 4536 4539 CONECT 4539 4538 4540 CONECT 4540 4533 4535 4539 CONECT 4541 4531 4554 4555 4556 CONECT 4542 4524 4526 CONECT 4543 4524 4528 CONECT 4544 4527 4529 CONECT 4545 4529 4530 CONECT 4546 4529 4532 CONECT 4547 4533 4534 CONECT 4548 4535 4536 4550 CONECT 4549 4537 CONECT 4550 4548 4551 4552 4553 CONECT 4551 4550 CONECT 4552 4550 CONECT 4553 4550 CONECT 4554 4541 CONECT 4555 4541 CONECT 4556 4541 CONECT 4557 4558 4562 CONECT 4558 4557 4559 4560 CONECT 4559 4558 CONECT 4560 4558 4561 CONECT 4561 4560 CONECT 4562 2559 4557 CONECT 4563 3572 CONECT 4564 2611 2637 2661 MASTER 303 0 5 32 10 0 0 6 4577 2 60 43 END