HEADER OXIDOREDUCTASE 28-AUG-24 9GLY TITLE STRUCTURE OF AN ANCESTRAL LACCASE FROM AGARICALES FUNGI COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS LACCASE, ANCESTRAL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MEDRANO REVDAT 1 10-SEP-25 9GLY 0 JRNL AUTH F.J.MEDRANO JRNL TITL STRUCTURE OF AN ANCESTRAL LACCASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 67773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2700 - 3.7200 0.99 4899 155 0.1373 0.1225 REMARK 3 2 3.7200 - 2.9500 0.99 4828 146 0.1465 0.1596 REMARK 3 3 2.9500 - 2.5800 0.98 4820 140 0.1609 0.2029 REMARK 3 4 2.5800 - 2.3400 0.98 4776 150 0.1662 0.2067 REMARK 3 5 2.3400 - 2.1700 0.90 4410 125 0.1652 0.2080 REMARK 3 6 2.1700 - 2.0500 0.97 4704 150 0.1643 0.1973 REMARK 3 7 2.0500 - 1.9400 0.97 4742 146 0.1761 0.1934 REMARK 3 8 1.9400 - 1.8600 0.97 4708 133 0.1741 0.1990 REMARK 3 9 1.8600 - 1.7900 0.96 4687 144 0.1840 0.2224 REMARK 3 10 1.7900 - 1.7300 0.96 4632 141 0.2093 0.2557 REMARK 3 11 1.7300 - 1.6700 0.96 4683 137 0.2353 0.2645 REMARK 3 12 1.6700 - 1.6200 0.96 4666 142 0.2588 0.3544 REMARK 3 13 1.6200 - 1.5800 0.95 4613 137 0.2580 0.2625 REMARK 3 14 1.5800 - 1.5400 0.95 4622 137 0.2711 0.3084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.176 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.748 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3931 REMARK 3 ANGLE : 0.921 5405 REMARK 3 CHIRALITY : 0.060 605 REMARK 3 PLANARITY : 0.008 721 REMARK 3 DIHEDRAL : 6.372 542 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1292141343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 48.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.75900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL AT PH 7.0 CONTAINING REMARK 280 20% PEG 3000 AND 0.2 M CALCIUM ACETATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.33000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 642 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1003 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1092 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1097 O HOH A 1121 2.14 REMARK 500 O HOH A 933 O HOH A 1064 2.14 REMARK 500 O HOH A 943 O HOH A 1078 2.14 REMARK 500 O HOH A 649 O HOH A 1033 2.14 REMARK 500 O HOH A 975 O HOH A 1098 2.15 REMARK 500 O1 EDO A 509 O HOH A 601 2.15 REMARK 500 O HOH A 711 O HOH A 812 2.15 REMARK 500 O HOH A 1007 O HOH A 1044 2.17 REMARK 500 O HOH A 995 O HOH A 1001 2.17 REMARK 500 O HOH A 884 O HOH A 889 2.17 REMARK 500 O HOH A 1005 O HOH A 1056 2.17 REMARK 500 O HOH A 1129 O HOH A 1143 2.17 REMARK 500 O HOH A 972 O HOH A 1020 2.18 REMARK 500 O VAL A 99 O HOH A 602 2.18 REMARK 500 O HOH A 659 O HOH A 1030 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1052 O HOH A 1052 2656 2.16 REMARK 500 O HOH A 1019 O HOH A 1101 4556 2.19 REMARK 500 O HOH A 762 O HOH A 922 1556 2.19 REMARK 500 O HOH A 971 O HOH A 1002 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 113 -135.37 46.53 REMARK 500 ASP A 205 -70.94 -157.32 REMARK 500 THR A 267 56.07 -101.39 REMARK 500 ASN A 418 54.31 -153.71 REMARK 500 ASN A 433 57.30 -140.16 REMARK 500 ASN A 442 89.10 -155.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1146 DISTANCE = 6.13 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 7 OD2 55.1 REMARK 620 3 HOH A 966 O 147.8 94.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 503 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HIS A 397 NE2 172.1 REMARK 620 3 HOH A 788 O 94.7 93.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 HIS A 109 NE2 139.4 REMARK 620 3 HIS A 451 NE2 107.5 111.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 399 NE2 112.4 REMARK 620 3 HIS A 449 NE2 119.2 123.1 REMARK 620 4 HOH A 945 O 87.9 107.5 96.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 504 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 394 ND1 REMARK 620 2 CYS A 450 SG 125.7 REMARK 620 3 HIS A 455 ND1 104.1 130.0 REMARK 620 N 1 2 DBREF 9GLY A 1 496 PDB 9GLY 9GLY 1 496 SEQRES 1 A 496 ALA ILE GLY PRO THR SER ASP LEU HIS ILE ALA ASN LYS SEQRES 2 A 496 ASN ILE SER PRO ASP GLY PHE ASN ARG SER ALA VAL LEU SEQRES 3 A 496 VAL ASN GLY THR PHE PRO GLY PRO LEU ILE THR ALA ASN SEQRES 4 A 496 LYS GLY ASP ASN PHE GLN ILE ASN VAL ILE ASN GLN LEU SEQRES 5 A 496 THR ASP PRO THR MET LEU ARG SER THR SER ILE HIS TRP SEQRES 6 A 496 HIS GLY LEU PHE GLN LYS GLY THR ASN TRP ALA ASP GLY SEQRES 7 A 496 PRO ALA PHE VAL THR GLN CYS PRO ILE ALA PRO GLY HIS SEQRES 8 A 496 SER PHE LEU TYR ASP PHE SER VAL PRO ASP GLN ALA GLY SEQRES 9 A 496 THR PHE TRP TYR HIS SER HIS LEU SER THR GLN TYR CYS SEQRES 10 A 496 ASP GLY LEU ARG GLY PRO LEU VAL ILE TYR ASP PRO ASN SEQRES 11 A 496 ASP PRO HIS LYS SER LEU TYR ASP VAL ASP ASP GLU SER SEQRES 12 A 496 THR ILE ILE THR LEU ALA ASP TRP TYR HIS THR PRO ALA SEQRES 13 A 496 PRO SER ALA GLN ALA VAL PRO THR PRO ASP SER THR LEU SEQRES 14 A 496 ILE ASN GLY LYS GLY ARG TYR SER GLY GLY PRO THR VAL SEQRES 15 A 496 PRO LEU ALA VAL ILE ASN VAL GLU GLN GLY LYS ARG TYR SEQRES 16 A 496 ARG PHE ARG LEU VAL SER ILE SER CYS ASP PRO ASN PHE SEQRES 17 A 496 THR PHE SER ILE ASP GLY HIS ASN LEU THR VAL ILE GLU SEQRES 18 A 496 VAL ASP GLY VAL ASN HIS GLU PRO LEU THR VAL ASP SER SEQRES 19 A 496 ILE GLN ILE PHE ALA GLY GLN ARG TYR SER PHE VAL LEU SEQRES 20 A 496 ASN ALA ASN GLN PRO VAL ASP ASN TYR TRP ILE ARG ALA SEQRES 21 A 496 LEU PRO ASN VAL GLY SER THR ASN PHE ASP GLY GLY ILE SEQRES 22 A 496 ASN SER ALA ILE LEU ARG TYR LYS GLY ALA PRO ASN ALA SEQRES 23 A 496 GLU PRO THR THR THR GLN SER THR SER SER ASN PRO LEU SEQRES 24 A 496 ASN GLU ALA ASN LEU HIS PRO LEU GLU ASN PRO GLY ALA SEQRES 25 A 496 PRO GLY ALA PRO THR ALA GLY GLY ALA ASP VAL ASN ILE SEQRES 26 A 496 ASN LEU ALA LEU ALA PHE SER GLY THR SER GLY LYS PHE SEQRES 27 A 496 THR ILE ASN GLY ALA SER PHE THR PRO PRO THR VAL PRO SEQRES 28 A 496 VAL LEU LEU GLN ILE LEU SER GLY ALA GLN THR ALA GLN SEQRES 29 A 496 ASP LEU LEU PRO SER GLY SER VAL TYR THR LEU PRO PRO SEQRES 30 A 496 ASN LYS VAL ILE GLU ILE SER ILE PRO GLY GLY ALA VAL SEQRES 31 A 496 GLY GLY PRO HIS PRO PHE HIS LEU HIS GLY HIS ALA PHE SEQRES 32 A 496 ASP VAL VAL ARG SER ALA GLY SER SER THR TYR ASN TYR SEQRES 33 A 496 VAL ASN PRO VAL ARG ARG ASP VAL VAL SER ILE GLY ALA SEQRES 34 A 496 ALA GLY ASP ASN VAL THR ILE ARG PHE THR THR ASP ASN SEQRES 35 A 496 PRO GLY PRO TRP PHE LEU HIS CYS HIS ILE ASP TRP HIS SEQRES 36 A 496 LEU GLU ALA GLY LEU ALA ILE VAL PHE ALA GLU ASP PRO SEQRES 37 A 496 ALA ASP VAL ALA SER ALA ASN PRO PRO PRO GLU ALA TRP SEQRES 38 A 496 ASP GLN LEU CYS PRO ILE TYR ASP ALA LEU PRO PRO GLU SEQRES 39 A 496 GLN LEU HET CU A 501 1 HET CU A 502 1 HET CU A 503 1 HET CU A 504 1 HET CA A 505 1 HET NAG A 506 14 HET NAG A 507 14 HET SO4 A 508 5 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HETNAM CU COPPER (II) ION HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CU 4(CU 2+) FORMUL 6 CA CA 2+ FORMUL 7 NAG 2(C8 H15 N O6) FORMUL 9 SO4 O4 S 2- FORMUL 10 EDO 3(C2 H6 O2) FORMUL 13 HOH *546(H2 O) HELIX 1 AA1 THR A 73 ASP A 77 5 5 HELIX 2 AA2 THR A 114 GLY A 119 5 6 HELIX 3 AA3 HIS A 133 TYR A 137 5 5 HELIX 4 AA4 ASP A 141 SER A 143 5 3 HELIX 5 AA5 PRO A 155 ALA A 159 5 5 HELIX 6 AA6 PHE A 269 ILE A 273 5 5 HELIX 7 AA7 ASN A 300 LEU A 304 5 5 HELIX 8 AA8 PRO A 351 SER A 358 1 8 HELIX 9 AA9 THR A 362 LEU A 366 5 5 HELIX 10 AB1 ILE A 452 ALA A 458 1 7 HELIX 11 AB2 ASP A 467 ASN A 475 1 9 HELIX 12 AB3 PRO A 478 ALA A 490 1 13 HELIX 13 AB4 PRO A 492 LEU A 496 5 5 SHEET 1 AA1 4 ARG A 22 VAL A 27 0 SHEET 2 AA1 4 THR A 5 ILE A 15 -1 N ILE A 15 O ARG A 22 SHEET 3 AA1 4 ASN A 43 ASN A 50 1 O ILE A 49 N ILE A 10 SHEET 4 AA1 4 SER A 92 SER A 98 -1 O PHE A 97 N PHE A 44 SHEET 1 AA2 4 ILE A 36 ASN A 39 0 SHEET 2 AA2 4 ARG A 121 TYR A 127 1 O TYR A 127 N ALA A 38 SHEET 3 AA2 4 GLY A 104 SER A 110 -1 N PHE A 106 O LEU A 124 SHEET 4 AA2 4 ILE A 63 HIS A 66 -1 N HIS A 64 O HIS A 109 SHEET 1 AA3 6 SER A 167 ILE A 170 0 SHEET 2 AA3 6 ILE A 145 TRP A 151 -1 N ALA A 149 O LEU A 169 SHEET 3 AA3 6 ARG A 194 SER A 201 1 O VAL A 200 N ILE A 146 SHEET 4 AA3 6 ARG A 242 ASN A 248 -1 O TYR A 243 N LEU A 199 SHEET 5 AA3 6 LEU A 217 VAL A 222 -1 N ILE A 220 O SER A 244 SHEET 6 AA3 6 VAL A 225 VAL A 232 -1 O VAL A 232 N LEU A 217 SHEET 1 AA4 5 VAL A 186 VAL A 189 0 SHEET 2 AA4 5 SER A 275 TYR A 280 1 O ILE A 277 N ILE A 187 SHEET 3 AA4 5 ASN A 255 PRO A 262 -1 N TYR A 256 O LEU A 278 SHEET 4 AA4 5 PHE A 208 ILE A 212 -1 N SER A 211 O ARG A 259 SHEET 5 AA4 5 ILE A 235 ILE A 237 -1 O ILE A 235 N PHE A 210 SHEET 1 AA5 5 VAL A 323 ASN A 326 0 SHEET 2 AA5 5 VAL A 380 PRO A 386 1 O GLU A 382 N VAL A 323 SHEET 3 AA5 5 ASN A 433 THR A 439 -1 O PHE A 438 N ILE A 381 SHEET 4 AA5 5 PHE A 403 ARG A 407 -1 N ASP A 404 O ARG A 437 SHEET 5 AA5 5 ARG A 421 ARG A 422 -1 O ARG A 422 N PHE A 403 SHEET 1 AA6 2 LEU A 329 PHE A 331 0 SHEET 2 AA6 2 PHE A 338 ILE A 340 -1 O THR A 339 N ALA A 330 SHEET 1 AA7 5 VAL A 372 LEU A 375 0 SHEET 2 AA7 5 ALA A 461 GLU A 466 1 O VAL A 463 N TYR A 373 SHEET 3 AA7 5 GLY A 444 CYS A 450 -1 N TRP A 446 O PHE A 464 SHEET 4 AA7 5 PRO A 395 LEU A 398 -1 N HIS A 397 O HIS A 449 SHEET 5 AA7 5 VAL A 424 SER A 426 -1 O VAL A 425 N PHE A 396 SSBOND 1 CYS A 85 CYS A 485 1555 1555 2.10 SSBOND 2 CYS A 117 CYS A 204 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 506 1555 1555 1.44 LINK ND2 ASN A 433 C1 NAG A 507 1555 1555 1.45 LINK OD1 ASP A 7 CA CA A 505 1555 1555 2.58 LINK OD2 ASP A 7 CA CA A 505 1555 1555 2.02 LINK NE2 HIS A 64 CU CU A 503 1555 1555 1.89 LINK ND1 HIS A 66 CU CU A 502 1555 1555 1.97 LINK NE2 HIS A 109 CU CU A 502 1555 1555 2.01 LINK NE2 HIS A 111 CU CU A 501 1555 1555 2.08 LINK ND1 HIS A 394 CU CU A 504 1555 1555 1.96 LINK NE2 HIS A 397 CU CU A 503 1555 1555 1.83 LINK NE2 HIS A 399 CU CU A 501 1555 1555 2.02 LINK NE2 HIS A 449 CU CU A 501 1555 1555 1.98 LINK SG CYS A 450 CU CU A 504 1555 1555 2.22 LINK NE2 HIS A 451 CU CU A 502 1555 1555 2.11 LINK ND1 HIS A 455 CU CU A 504 1555 1555 2.13 LINK CU CU A 501 O HOH A 945 1555 1555 2.36 LINK CU CU A 503 O HOH A 788 1555 1555 2.59 LINK CA CA A 505 O HOH A 966 1555 1555 2.12 CISPEP 1 PHE A 31 PRO A 32 0 -7.88 CISPEP 2 LEU A 367 PRO A 368 0 2.32 CISPEP 3 GLY A 392 PRO A 393 0 3.00 CRYST1 88.660 96.540 57.058 90.00 93.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011279 0.000000 0.000666 0.00000 SCALE2 0.000000 0.010358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017557 0.00000 CONECT 45 3776 CONECT 46 3776 CONECT 207 3777 CONECT 481 3774 CONECT 502 3773 CONECT 648 3681 CONECT 845 3773 CONECT 861 3772 CONECT 909 1579 CONECT 1579 909 CONECT 2973 3775 CONECT 3004 3774 CONECT 3022 3772 CONECT 3272 3791 CONECT 3407 3772 CONECT 3413 3775 CONECT 3423 3773 CONECT 3460 3775 CONECT 3681 648 CONECT 3772 861 3022 3407 4166 CONECT 3773 502 845 3423 CONECT 3774 481 3004 4009 CONECT 3775 2973 3413 3460 CONECT 3776 45 46 4187 CONECT 3777 207 3778 3788 CONECT 3778 3777 3779 3785 CONECT 3779 3778 3780 3786 CONECT 3780 3779 3781 3787 CONECT 3781 3780 3782 3788 CONECT 3782 3781 3789 CONECT 3783 3784 3785 3790 CONECT 3784 3783 CONECT 3785 3778 3783 CONECT 3786 3779 CONECT 3787 3780 CONECT 3788 3777 3781 CONECT 3789 3782 CONECT 3790 3783 CONECT 3791 3272 3792 3802 CONECT 3792 3791 3793 3799 CONECT 3793 3792 3794 3800 CONECT 3794 3793 3795 3801 CONECT 3795 3794 3796 3802 CONECT 3796 3795 3803 CONECT 3797 3798 3799 3804 CONECT 3798 3797 CONECT 3799 3792 3797 CONECT 3800 3793 CONECT 3801 3794 CONECT 3802 3791 3795 CONECT 3803 3796 CONECT 3804 3797 CONECT 3805 3806 3807 3808 3809 CONECT 3806 3805 CONECT 3807 3805 CONECT 3808 3805 CONECT 3809 3805 CONECT 3810 3811 3812 CONECT 3811 3810 CONECT 3812 3810 3813 CONECT 3813 3812 CONECT 3814 3815 3816 CONECT 3815 3814 CONECT 3816 3814 3817 CONECT 3817 3816 CONECT 3818 3819 3820 CONECT 3819 3818 CONECT 3820 3818 3821 CONECT 3821 3820 CONECT 4009 3774 CONECT 4166 3772 CONECT 4187 3776 MASTER 368 0 11 13 31 0 0 6 4358 1 72 39 END