HEADER ANTITUMOR PROTEIN 06-SEP-24 9GP2 TITLE APOJ22.9 UNLIGANDED STRUCTURE OF AN FAB FRAGMENT FROM THE THERAPEUTIC TITLE 2 ANTIBODY J22.9-XI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAINS: H; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FAB HEAVY CHAIN SEQUENCE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHAINS: L; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: FAB LIGHT CHAIN SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB FRAGMENT, THERAPEUTIC ANTIBODY, CHIMERIC ANTIBODY, ANTITUMOR KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.F.MARINO,O.DAUMKE REVDAT 1 25-SEP-24 9GP2 0 JRNL AUTH S.F.MARINO,O.DAUMKE JRNL TITL APOJ22.9 UNLIGANDED STRUCTURE OF AN FAB FRAGMENT FROM THE JRNL TITL 2 THERAPEUTIC ANTIBODY J22.9-XI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_5407 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6700 - 5.2500 1.00 2962 156 0.1779 0.2081 REMARK 3 2 5.2500 - 4.1700 1.00 2788 147 0.1193 0.1617 REMARK 3 3 4.1700 - 3.6400 1.00 2740 144 0.1333 0.1574 REMARK 3 4 3.6400 - 3.3100 1.00 2718 144 0.1387 0.1585 REMARK 3 5 3.3100 - 3.0700 1.00 2703 142 0.1549 0.1810 REMARK 3 6 3.0700 - 2.8900 1.00 2702 142 0.1568 0.2251 REMARK 3 7 2.8900 - 2.7400 1.00 2688 142 0.1528 0.2112 REMARK 3 8 2.7400 - 2.6300 1.00 2679 140 0.1667 0.2431 REMARK 3 9 2.6300 - 2.5200 1.00 2665 141 0.1669 0.2306 REMARK 3 10 2.5200 - 2.4400 1.00 2658 140 0.1767 0.2230 REMARK 3 11 2.4400 - 2.3600 1.00 2660 140 0.1743 0.2684 REMARK 3 12 2.3600 - 2.2900 1.00 2672 140 0.1814 0.2337 REMARK 3 13 2.2900 - 2.2300 1.00 2639 139 0.2166 0.2742 REMARK 3 14 2.2300 - 2.1800 1.00 2647 140 0.1873 0.2738 REMARK 3 15 2.1800 - 2.1300 1.00 2645 139 0.2011 0.2475 REMARK 3 16 2.1300 - 2.0800 1.00 2645 140 0.2036 0.2138 REMARK 3 17 2.0800 - 2.0400 1.00 2615 138 0.2324 0.2639 REMARK 3 18 2.0400 - 2.0000 1.00 2640 139 0.2573 0.2588 REMARK 3 19 2.0000 - 1.9700 0.96 2554 134 0.2929 0.3461 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.216 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.696 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3408 REMARK 3 ANGLE : 1.031 4632 REMARK 3 CHIRALITY : 0.061 519 REMARK 3 PLANARITY : 0.009 595 REMARK 3 DIHEDRAL : 17.427 1234 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4911 -7.0288 32.2592 REMARK 3 T TENSOR REMARK 3 T11: 0.4612 T22: 0.3407 REMARK 3 T33: 0.4053 T12: 0.1555 REMARK 3 T13: -0.0530 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 4.6768 L22: 1.5081 REMARK 3 L33: 5.7135 L12: -1.5992 REMARK 3 L13: -4.2307 L23: 2.7915 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: -0.3743 S13: 0.3937 REMARK 3 S21: 0.2364 S22: 0.0975 S23: -0.1170 REMARK 3 S31: -0.8015 S32: 0.2170 S33: -0.2454 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.9381 -8.6644 45.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.6187 T22: 0.4493 REMARK 3 T33: 0.4402 T12: 0.2352 REMARK 3 T13: -0.0742 T23: -0.0891 REMARK 3 L TENSOR REMARK 3 L11: 3.5996 L22: 2.7861 REMARK 3 L33: 2.4782 L12: -1.5563 REMARK 3 L13: 2.9726 L23: -1.5126 REMARK 3 S TENSOR REMARK 3 S11: -0.5528 S12: -1.0356 S13: 0.4978 REMARK 3 S21: 0.5296 S22: 0.5629 S23: -0.0284 REMARK 3 S31: -0.9730 S32: -0.7595 S33: -0.0531 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.8483 -14.9247 38.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.4226 T22: 0.3146 REMARK 3 T33: 0.4002 T12: 0.1234 REMARK 3 T13: -0.0253 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.6654 L22: 2.9679 REMARK 3 L33: 2.9428 L12: -0.3444 REMARK 3 L13: 1.8364 L23: -1.4557 REMARK 3 S TENSOR REMARK 3 S11: -0.1645 S12: -0.1228 S13: 0.3358 REMARK 3 S21: 0.2049 S22: -0.0666 S23: -0.3456 REMARK 3 S31: -0.1820 S32: 0.1851 S33: 0.1529 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 107 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2377 -10.5592 23.1073 REMARK 3 T TENSOR REMARK 3 T11: 0.3645 T22: 0.2698 REMARK 3 T33: 0.3332 T12: 0.1014 REMARK 3 T13: -0.0060 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.7273 L22: 0.3809 REMARK 3 L33: 0.9465 L12: 0.0805 REMARK 3 L13: 0.7064 L23: 0.3909 REMARK 3 S TENSOR REMARK 3 S11: -0.2208 S12: -0.2211 S13: 0.0952 REMARK 3 S21: 0.0987 S22: 0.1003 S23: -0.1155 REMARK 3 S31: -0.0940 S32: -0.1069 S33: 0.1352 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 132 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1652 -15.0073 7.4381 REMARK 3 T TENSOR REMARK 3 T11: 0.3845 T22: 0.4514 REMARK 3 T33: 0.5839 T12: -0.0044 REMARK 3 T13: -0.0600 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 6.9516 L22: 3.2721 REMARK 3 L33: 4.5472 L12: -0.0431 REMARK 3 L13: -0.2463 L23: -0.5824 REMARK 3 S TENSOR REMARK 3 S11: -0.1243 S12: 0.7531 S13: -0.1003 REMARK 3 S21: -0.2667 S22: 0.0916 S23: 0.9822 REMARK 3 S31: 0.1903 S32: -0.9264 S33: 0.0037 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 153 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9068 -10.4102 15.2705 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.2358 REMARK 3 T33: 0.2606 T12: 0.0096 REMARK 3 T13: 0.0181 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 5.9520 L22: 2.2863 REMARK 3 L33: 1.9741 L12: 0.3505 REMARK 3 L13: 0.1906 L23: 0.4302 REMARK 3 S TENSOR REMARK 3 S11: 0.1115 S12: -0.1027 S13: 0.1747 REMARK 3 S21: 0.0276 S22: -0.2029 S23: 0.4073 REMARK 3 S31: -0.0150 S32: -0.4835 S33: 0.0544 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 211 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1573 -3.6447 7.9016 REMARK 3 T TENSOR REMARK 3 T11: 0.3655 T22: 0.2969 REMARK 3 T33: 0.3761 T12: 0.0737 REMARK 3 T13: -0.1001 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.8593 L22: 3.5538 REMARK 3 L33: 1.5704 L12: 1.4140 REMARK 3 L13: 0.1357 L23: 1.0725 REMARK 3 S TENSOR REMARK 3 S11: -0.4528 S12: 0.4358 S13: 0.7030 REMARK 3 S21: -0.7826 S22: 0.0399 S23: 0.8255 REMARK 3 S31: -0.5998 S32: -0.3662 S33: 0.3600 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0327 -35.1621 34.2621 REMARK 3 T TENSOR REMARK 3 T11: 0.5305 T22: 0.4434 REMARK 3 T33: 0.3986 T12: -0.0394 REMARK 3 T13: -0.0009 T23: 0.1133 REMARK 3 L TENSOR REMARK 3 L11: 6.6926 L22: 1.5176 REMARK 3 L33: 3.0187 L12: -1.8857 REMARK 3 L13: 1.0310 L23: 0.4940 REMARK 3 S TENSOR REMARK 3 S11: -0.1181 S12: 0.3380 S13: -0.2144 REMARK 3 S21: -0.1083 S22: 0.2354 S23: 0.0171 REMARK 3 S31: 0.5735 S32: -0.3312 S33: -0.0561 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.3027 -30.0838 42.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.4172 T22: 0.5147 REMARK 3 T33: 0.3163 T12: 0.0305 REMARK 3 T13: 0.0232 T23: 0.1081 REMARK 3 L TENSOR REMARK 3 L11: 5.2841 L22: 1.7104 REMARK 3 L33: 3.8272 L12: 0.7594 REMARK 3 L13: 0.9448 L23: 0.2757 REMARK 3 S TENSOR REMARK 3 S11: 0.1183 S12: -0.5721 S13: -0.1821 REMARK 3 S21: 0.1506 S22: 0.0115 S23: 0.1230 REMARK 3 S31: 0.1812 S32: -0.7912 S33: -0.1041 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 91 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6165 -30.2999 32.8238 REMARK 3 T TENSOR REMARK 3 T11: 0.3761 T22: 0.2926 REMARK 3 T33: 0.2745 T12: -0.0104 REMARK 3 T13: -0.0009 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 8.3591 L22: 0.1645 REMARK 3 L33: 4.3444 L12: 0.6862 REMARK 3 L13: 5.8250 L23: 0.5550 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: -0.1695 S13: -0.5966 REMARK 3 S21: -0.0193 S22: 0.1430 S23: -0.0223 REMARK 3 S31: 0.4093 S32: -0.2995 S33: -0.2472 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0479 -23.6281 6.2081 REMARK 3 T TENSOR REMARK 3 T11: 0.3127 T22: 0.2669 REMARK 3 T33: 0.3111 T12: -0.0465 REMARK 3 T13: -0.0495 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.9116 L22: 1.3554 REMARK 3 L33: 6.1312 L12: 0.4896 REMARK 3 L13: -0.7048 L23: 0.0239 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.0073 S13: 0.0029 REMARK 3 S21: -0.0082 S22: -0.0256 S23: 0.0805 REMARK 3 S31: 0.1259 S32: -0.1262 S33: -0.0310 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 164 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1444 -25.2236 5.5991 REMARK 3 T TENSOR REMARK 3 T11: 0.3728 T22: 0.3234 REMARK 3 T33: 0.3340 T12: -0.0798 REMARK 3 T13: -0.0429 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.4819 L22: 1.8280 REMARK 3 L33: 4.1070 L12: 0.6797 REMARK 3 L13: -1.5252 L23: -1.4479 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0644 S13: -0.1587 REMARK 3 S21: -0.1832 S22: 0.0611 S23: 0.2140 REMARK 3 S31: 0.4499 S32: -0.4415 S33: -0.0455 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1292141563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MARCH 30, 2013 REMARK 200 DATA SCALING SOFTWARE : XDS VERSION MARCH 30, 2013 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.968 REMARK 200 RESOLUTION RANGE LOW (A) : 49.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BISTRIS PEG 3350 CUCL2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.41667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.70833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 113.41667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.70833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.41667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.70833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 113.41667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.70833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 527 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP L 1 O HOH L 301 1.97 REMARK 500 O HOH H 437 O HOH L 542 2.04 REMARK 500 O HOH L 553 O HOH L 570 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS L 194 CB CYS L 194 SG -0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 105 49.45 -84.57 REMARK 500 THR H 198 -65.55 -108.58 REMARK 500 ASP L 30 -125.98 53.66 REMARK 500 ALA L 51 -25.56 63.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QY9 RELATED DB: PDB REMARK 900 J22.9-H, FULLY HUMANIZED FAB FRAGMENT BASED ON CHIMERIC J22.9-XI REMARK 900 IGG AGAINST BCMA REMARK 900 RELATED ID: 8QYA RELATED DB: PDB REMARK 900 J22.9-FNY, FULLY HUMANIZED, CDR OPTIMIZED FAB FRAGMENT BASED ON REMARK 900 CHIMERIC J22.9-XI IGG AGAINST BCMA; WITH VH CDR2 GLYCOSYLATION REMARK 900 RELATED ID: 8QYB RELATED DB: PDB REMARK 900 J22.9-ISY, FULLY HUMANIZED AND CDR OPTIMIZED FAB FRAGMENT BASED ON REMARK 900 CHIMERIC J22.9-XI IGG AGAINST BCMA REMARK 900 RELATED ID: 4ZFO RELATED DB: PDB REMARK 900 J22.9-XI: CHIMERIC MOUSE/HUMAN ANTIBODY AGAINST HUMAN BCMA (CD269) DBREF 9GP2 H 1 222 PDB 9GP2 9GP2 1 222 DBREF 9GP2 L 1 213 PDB 9GP2 9GP2 1 213 SEQRES 1 H 222 GLN VAL GLN LEU GLN GLN SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 222 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 222 ILE ASP PHE SER ARG TYR TRP MET SER TRP VAL ARG ARG SEQRES 4 H 222 ALA PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE ASN SEQRES 5 H 222 PRO ASP SER SER THR ILE ASN TYR ALA PRO SER LEU LYS SEQRES 6 H 222 ASP LYS PHE ILE ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 H 222 LEU TYR LEU GLN MET SER LYS VAL ARG SER GLU ASP THR SEQRES 8 H 222 ALA LEU TYR TYR CYS ALA SER LEU TYR TYR ASP TYR GLY SEQRES 9 H 222 ASP ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL THR SEQRES 10 H 222 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 222 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 222 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 222 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 222 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 222 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 222 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 222 PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 18 H 222 SER SEQRES 1 L 213 ASP ILE VAL MET THR GLN SER GLN ARG PHE MET THR THR SEQRES 2 L 213 SER VAL GLY ASP ARG VAL SER VAL THR CYS LYS ALA SER SEQRES 3 L 213 GLN SER VAL ASP SER ASN VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO ARG GLN SER PRO LYS ALA LEU ILE PHE SER ALA SER SEQRES 5 L 213 LEU ARG PHE SER GLY VAL PRO ALA ARG PHE THR GLY SER SEQRES 6 L 213 GLY SER GLY THR ASP PHE THR LEU THR ILE SER ASN LEU SEQRES 7 L 213 GLN SER GLU ASP LEU ALA GLU TYR PHE CYS GLN GLN TYR SEQRES 8 L 213 ASN ASN TYR PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 L 213 GLU LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 213 PHE ASN ARG GLY GLU FORMUL 3 HOH *586(H2 O) HELIX 1 AA1 ASP H 28 TYR H 32 5 5 HELIX 2 AA2 PRO H 62 LYS H 65 5 4 HELIX 3 AA3 ASN H 74 LYS H 76 5 3 HELIX 4 AA4 ARG H 87 THR H 91 5 5 HELIX 5 AA5 SER H 163 ALA H 165 5 3 HELIX 6 AA6 SER H 194 THR H 198 5 5 HELIX 7 AA7 GLN L 79 LEU L 83 5 5 HELIX 8 AA8 SER L 121 LYS L 126 1 6 HELIX 9 AA9 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N ILE H 69 O GLN H 82 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 114 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA2 6 ALA H 92 LEU H 99 -1 N TYR H 94 O THR H 114 SHEET 4 AA2 6 MET H 34 ARG H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 ILE H 58 TYR H 60 -1 O ASN H 59 N GLU H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 114 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA3 4 ALA H 92 LEU H 99 -1 N TYR H 94 O THR H 114 SHEET 4 AA3 4 MET H 107 TRP H 110 -1 O TYR H 109 N SER H 98 SHEET 1 AA4 4 SER H 127 LEU H 131 0 SHEET 2 AA4 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AA4 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 AA4 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AA5 4 SER H 127 LEU H 131 0 SHEET 2 AA5 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AA5 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 AA5 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AA6 3 THR H 158 TRP H 161 0 SHEET 2 AA6 3 TYR H 201 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AA6 3 THR H 212 VAL H 218 -1 O VAL H 214 N VAL H 205 SHEET 1 AA7 4 MET L 4 THR L 5 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA7 4 PHE L 62 SER L 65 -1 N THR L 63 O THR L 74 SHEET 1 AA8 6 PHE L 10 THR L 13 0 SHEET 2 AA8 6 THR L 102 LEU L 106 1 O LYS L 103 N MET L 11 SHEET 3 AA8 6 GLU L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 VAL L 33 GLN L 38 -1 N GLN L 38 O GLU L 85 SHEET 5 AA8 6 LYS L 45 PHE L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 LEU L 53 ARG L 54 -1 O LEU L 53 N PHE L 49 SHEET 1 AA9 4 PHE L 10 THR L 13 0 SHEET 2 AA9 4 THR L 102 LEU L 106 1 O LYS L 103 N MET L 11 SHEET 3 AA9 4 GLU L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.09 SSBOND 2 CYS H 147 CYS H 203 1555 1555 2.08 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.02 CISPEP 1 PHE H 153 PRO H 154 0 -9.54 CISPEP 2 GLU H 155 PRO H 156 0 1.52 CISPEP 3 TYR L 94 PRO L 95 0 -0.11 CISPEP 4 TYR L 140 PRO L 141 0 5.47 CRYST1 122.374 122.374 170.125 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008172 0.004718 0.000000 0.00000 SCALE2 0.000000 0.009436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005878 0.00000