HEADER HYDROLASE 23-SEP-24 9GV8 TITLE N-ACYL-D-AMINO-ACID DEACYLASE (D-ACYLASE) FROM KLEBSIELLA PNEUMONIAE TITLE 2 IN THE ABSENCE OF GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-AMINOACYLASE; COMPND 5 EC: 3.5.1.-,3.5.1.81; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE KP13; SOURCE 3 ORGANISM_TAXID: 1123862; SOURCE 4 GENE: DAN, B5L96_17380, B6I68_16395, BANRA_04485, BL124_00028775, SOURCE 5 DW281_07100, EAO17_17410, FXN67_23300, G4V31_23420, GJJ08_023370, SOURCE 6 GJJ13_021835, GJJ18_03715, GNF00_21165, NCTC11679_04932, SOURCE 7 NCTC13443_01470, NCTC5052_02702, NCTC9601_05682, NCTC9661_05441, SOURCE 8 QIG75_04865, SAMEA3499874_02915, SAMEA3499901_00964, SOURCE 9 SAMEA3512100_03687, SAMEA3515122_03158, SAMEA3538658_01149, SOURCE 10 SAMEA3538828_01003, SAMEA3673026_03520, SAMEA3720909_04521, SOURCE 11 SAMEA4364603_03367, SAMEA4873597_03320, SAMEA4873632_03948, SOURCE 12 VKR_04363; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS N-ACYL-D-AMINO-ACID DEACYLASE, D-ACYLASE, AMIDOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,S.MARTINEZ-RODRIGUEZ REVDAT 1 18-JUN-25 9GV8 0 JRNL AUTH S.MARTINEZ-RODRIGUEZ,J.A.GAVIRA JRNL TITL REVISITING D-ACYLASES FOR D-AMINO ACID PRODUCTION. JRNL REF MICROB BIOTECHNOL V. 18 70179 2025 JRNL REFN ISSN 1751-7915 JRNL PMID 40491232 JRNL DOI 10.1111/1751-7915.70179 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.1_5286: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 22989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.9100 - 5.2000 1.00 2906 157 0.1844 0.2077 REMARK 3 2 5.2000 - 4.1300 1.00 2856 94 0.1750 0.2358 REMARK 3 3 4.1300 - 3.6100 0.99 2743 157 0.2170 0.2561 REMARK 3 4 3.6000 - 3.2800 1.00 2700 169 0.2496 0.2968 REMARK 3 5 3.2800 - 3.0400 1.00 2755 144 0.2987 0.3489 REMARK 3 6 3.0400 - 2.8600 1.00 2742 144 0.3144 0.3635 REMARK 3 7 2.8600 - 2.7200 0.99 2696 127 0.3478 0.3365 REMARK 3 8 2.7200 - 2.6000 0.91 2472 127 0.4107 0.4279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3993 REMARK 3 ANGLE : 0.497 5441 REMARK 3 CHIRALITY : 0.043 591 REMARK 3 PLANARITY : 0.004 727 REMARK 3 DIHEDRAL : 13.726 1522 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6869 34.9112 20.3656 REMARK 3 T TENSOR REMARK 3 T11: 0.3575 T22: 0.6392 REMARK 3 T33: 0.5081 T12: -0.0486 REMARK 3 T13: -0.0057 T23: 0.0716 REMARK 3 L TENSOR REMARK 3 L11: 4.0635 L22: 1.6351 REMARK 3 L33: 1.5772 L12: 1.7722 REMARK 3 L13: 1.6370 L23: 0.8073 REMARK 3 S TENSOR REMARK 3 S11: 0.1968 S12: -0.0058 S13: -0.2653 REMARK 3 S21: 0.0371 S22: -0.0892 S23: -0.2292 REMARK 3 S31: 0.1105 S32: 0.1973 S33: -0.1219 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.9444 28.6487 5.0414 REMARK 3 T TENSOR REMARK 3 T11: 0.4701 T22: 0.6620 REMARK 3 T33: 0.5887 T12: -0.0307 REMARK 3 T13: -0.0363 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.6024 L22: 1.9785 REMARK 3 L33: 1.6609 L12: -1.2555 REMARK 3 L13: -0.7575 L23: -0.5757 REMARK 3 S TENSOR REMARK 3 S11: 0.1321 S12: 0.4811 S13: -0.3133 REMARK 3 S21: -0.1717 S22: -0.1574 S23: 0.2605 REMARK 3 S31: 0.4708 S32: -0.2308 S33: 0.0422 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.5747 45.3874 -3.7892 REMARK 3 T TENSOR REMARK 3 T11: 0.4619 T22: 0.7998 REMARK 3 T33: 0.5436 T12: 0.0134 REMARK 3 T13: -0.0637 T23: 0.1455 REMARK 3 L TENSOR REMARK 3 L11: 1.6412 L22: 0.5744 REMARK 3 L33: 2.1475 L12: 0.6063 REMARK 3 L13: -1.2284 L23: -0.1373 REMARK 3 S TENSOR REMARK 3 S11: -0.0649 S12: 0.7237 S13: 0.2305 REMARK 3 S21: -0.2004 S22: 0.1354 S23: 0.1448 REMARK 3 S31: -0.2642 S32: -0.4697 S33: -0.0488 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 478 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7008 38.2290 11.4549 REMARK 3 T TENSOR REMARK 3 T11: 0.3633 T22: 0.5067 REMARK 3 T33: 0.4623 T12: -0.0124 REMARK 3 T13: -0.0251 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 1.7092 L22: 2.7117 REMARK 3 L33: 3.1942 L12: 0.4799 REMARK 3 L13: 0.7552 L23: -0.3825 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: 0.3462 S13: 0.0107 REMARK 3 S21: -0.2527 S22: -0.0186 S23: -0.1227 REMARK 3 S31: 0.0460 S32: 0.4324 S33: -0.1092 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1292141932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 2.73900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HRI: 0.2 M AMMONIUM SULFATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 30% W/V POLYETHYLENE GLYCOL REMARK 280 8,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.29333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.64667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.64667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.29333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 65 31.76 -91.74 REMARK 500 ARG A 133 70.96 53.86 REMARK 500 PHE A 221 -118.51 -130.34 REMARK 500 PHE A 221 -118.66 -130.34 REMARK 500 PRO A 223 44.90 -85.92 REMARK 500 PRO A 223 44.90 -85.39 REMARK 500 GLU A 230 -75.54 -54.78 REMARK 500 HIS A 246 62.77 24.55 REMARK 500 MET A 369 77.41 56.49 REMARK 500 THR A 402 -90.09 -136.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 509 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 NE2 REMARK 620 2 HIS A 64 NE2 131.3 REMARK 620 3 CYS A 91 SG 90.2 112.5 REMARK 620 4 SO4 A 505 O3 125.7 89.6 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 510 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 91 SG REMARK 620 2 HIS A 216 ND1 119.3 REMARK 620 3 HIS A 246 NE2 116.9 92.7 REMARK 620 4 SO4 A 505 O4 117.1 99.5 107.6 REMARK 620 N 1 2 3 DBREF 9GV8 A 1 479 UNP W9BIW9 W9BIW9_KLEPN 1 479 SEQADV 9GV8 HIS A 480 UNP W9BIW9 EXPRESSION TAG SEQADV 9GV8 HIS A 481 UNP W9BIW9 EXPRESSION TAG SEQADV 9GV8 HIS A 482 UNP W9BIW9 EXPRESSION TAG SEQADV 9GV8 HIS A 483 UNP W9BIW9 EXPRESSION TAG SEQADV 9GV8 HIS A 484 UNP W9BIW9 EXPRESSION TAG SEQADV 9GV8 HIS A 485 UNP W9BIW9 EXPRESSION TAG SEQRES 1 A 485 MET LYS VAL ASP TRP LEU PHE LYS ASN VAL THR VAL ILE SEQRES 2 A 485 ASP GLY SER GLY GLY PRO GLN TYR ARG ALA ASP VAL ALA SEQRES 3 A 485 VAL LYS GLY ASP ARG ILE MET ALA ILE ALA PRO ALA LEU SEQRES 4 A 485 ASP VAL ALA ALA GLU GLN VAL ILE ASP GLY GLN GLY ARG SEQRES 5 A 485 VAL LEU ALA PRO GLY PHE ILE ASP VAL HIS THR HIS ASP SEQRES 6 A 485 ASP ILE ASN VAL ILE ARG MET PRO GLU TYR LEU PRO LYS SEQRES 7 A 485 LEU SER GLN GLY VAL THR THR VAL ILE VAL GLY ASN CYS SEQRES 8 A 485 GLY ILE SER ALA ALA THR ALA THR MET ARG GLY GLU VAL SEQRES 9 A 485 PRO ASP PRO MET ASN LEU LEU GLY GLU GLN GLN HIS PHE SEQRES 10 A 485 ILE TYR PRO THR VAL GLU ALA TYR ALA HIS ALA VAL GLU SEQRES 11 A 485 ALA ALA ARG PRO SER LEU ASN VAL GLY THR LEU ILE GLY SEQRES 12 A 485 HIS THR ALA LEU ARG ASN ASN HIS MET ASP ASP LEU PHE SEQRES 13 A 485 ARG PRO ALA ASN GLU THR GLU ILE ALA GLY MET ARG VAL SEQRES 14 A 485 GLN LEU ARG ASP ALA LEU ARG GLN GLY ALA LEU GLY LEU SEQRES 15 A 485 SER THR GLY LEU ALA TYR ALA SER ALA PHE GLN SER THR SEQRES 16 A 485 THR GLU GLU VAL MET ALA LEU ALA GLU GLU LEU ALA ALA SEQRES 17 A 485 GLY LYS GLY VAL TYR THR THR HIS LEU ARG SER GLU PHE SEQRES 18 A 485 GLU PRO ILE LEU GLU ALA LEU ASP GLU ALA PHE ARG ILE SEQRES 19 A 485 GLY ARG HIS GLY ASN VAL PRO VAL VAL VAL SER HIS HIS SEQRES 20 A 485 LYS CYS ALA GLY ALA LYS ASN TRP GLY ARG THR LYS GLU SEQRES 21 A 485 THR LEU ALA PHE PHE ASP GLU MET ARG GLN GLN GLN ASP SEQRES 22 A 485 ILE ALA CYS ASP CYS TYR PRO TYR SER ALA SER SER SER SEQRES 23 A 485 THR LEU ASP MET LYS GLN VAL THR ASP GLU PHE ASP ILE SEQRES 24 A 485 VAL ILE THR TRP SER GLU ALA GLN PRO GLU GLN ALA GLY SEQRES 25 A 485 LYS THR LEU GLN GLN ILE ALA ASP GLU TRP GLN VAL SER SEQRES 26 A 485 LEU HIS ASP ALA ALA ALA ARG LEU MET PRO ALA GLY ALA SEQRES 27 A 485 ILE TYR HIS ASN MET ASP GLU GLN ASP VAL ARG ARG VAL SEQRES 28 A 485 MET ARG TYR PRO VAL THR MET ILE GLY SER ASP GLY LEU SEQRES 29 A 485 PRO ASN ASP PRO MET PRO HIS PRO ARG LEU TRP GLY ALA SEQRES 30 A 485 PHE PRO ARG VAL LEU GLY HIS TYR SER ARG ASP GLU GLN SEQRES 31 A 485 LEU PHE PRO LEU THR THR ALA VAL HIS LYS MET THR GLY SEQRES 32 A 485 LEU SER ALA ALA ARG PHE GLN LEU ALA ASP ARG GLY LEU SEQRES 33 A 485 VAL LYS ILE GLY TYR PHE ALA ASP LEU VAL LEU PHE ASP SEQRES 34 A 485 PRO GLN THR VAL ARG ASP VAL ALA SER PHE SER ASP PRO SEQRES 35 A 485 LYS ARG PRO ALA ASP GLY ILE GLU ALA VAL MET VAL ASN SEQRES 36 A 485 GLY VAL MET SER TYR GLY SER ASP LYS LYS ILE THR GLY SEQRES 37 A 485 ARG ALA GLY ARG PHE LEU ARG ARG ARG MET ASP HIS HIS SEQRES 38 A 485 HIS HIS HIS HIS HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET NI A 509 1 HET NI A 510 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 NI 2(NI 2+) FORMUL 12 HOH *66(H2 O) HELIX 1 AA1 ILE A 67 MET A 72 1 6 HELIX 2 AA2 TYR A 75 SER A 80 1 6 HELIX 3 AA3 PRO A 107 LEU A 111 5 5 HELIX 4 AA4 GLU A 113 PHE A 117 5 5 HELIX 5 AA5 THR A 121 ARG A 133 1 13 HELIX 6 AA6 HIS A 144 MET A 152 1 9 HELIX 7 AA7 ASN A 160 GLN A 177 1 18 HELIX 8 AA8 TYR A 188 GLN A 193 1 6 HELIX 9 AA9 THR A 195 GLU A 204 1 10 HELIX 10 AB1 GLU A 205 ALA A 207 5 3 HELIX 11 AB2 PRO A 223 ASN A 239 1 17 HELIX 12 AB3 GLY A 251 GLY A 256 5 6 HELIX 13 AB4 ARG A 257 ARG A 269 1 13 HELIX 14 AB5 THR A 314 TRP A 322 1 9 HELIX 15 AB6 SER A 325 MET A 334 1 10 HELIX 16 AB7 ASP A 344 TYR A 354 1 11 HELIX 17 AB8 PRO A 372 HIS A 384 1 13 HELIX 18 AB9 PRO A 393 LYS A 400 1 8 HELIX 19 AC1 THR A 402 PHE A 409 1 8 SHEET 1 AA1 4 ARG A 31 ALA A 36 0 SHEET 2 AA1 4 TYR A 21 LYS A 28 -1 N ASP A 24 O ALA A 36 SHEET 3 AA1 4 VAL A 3 VAL A 12 -1 N VAL A 12 O TYR A 21 SHEET 4 AA1 4 ALA A 43 ASP A 48 1 O GLU A 44 N VAL A 3 SHEET 1 AA2 7 ARG A 31 ALA A 36 0 SHEET 2 AA2 7 TYR A 21 LYS A 28 -1 N ASP A 24 O ALA A 36 SHEET 3 AA2 7 VAL A 3 VAL A 12 -1 N VAL A 12 O TYR A 21 SHEET 4 AA2 7 VAL A 53 PRO A 56 1 O LEU A 54 N THR A 11 SHEET 5 AA2 7 LEU A 425 PHE A 428 -1 O PHE A 428 N VAL A 53 SHEET 6 AA2 7 ILE A 449 VAL A 454 -1 O MET A 453 N LEU A 425 SHEET 7 AA2 7 VAL A 457 GLY A 461 -1 O VAL A 457 N VAL A 454 SHEET 1 AA3 3 PHE A 58 ASP A 60 0 SHEET 2 AA3 3 VAL A 83 VAL A 88 1 O ILE A 87 N ASP A 60 SHEET 3 AA3 3 ASN A 137 THR A 140 1 O ASN A 137 N THR A 84 SHEET 1 AA4 6 ILE A 142 GLY A 143 0 SHEET 2 AA4 6 GLY A 181 GLY A 185 1 O SER A 183 N ILE A 142 SHEET 3 AA4 6 VAL A 212 HIS A 216 1 O HIS A 216 N THR A 184 SHEET 4 AA4 6 VAL A 242 VAL A 244 1 O VAL A 243 N TYR A 213 SHEET 5 AA4 6 ILE A 274 CYS A 278 1 O ALA A 275 N VAL A 244 SHEET 6 AA4 6 THR A 357 ILE A 359 1 O MET A 358 N CYS A 276 SHEET 1 AA5 3 SER A 284 THR A 287 0 SHEET 2 AA5 3 ALA A 336 TYR A 340 -1 O TYR A 340 N SER A 284 SHEET 3 AA5 3 ILE A 299 SER A 304 -1 N VAL A 300 O ILE A 339 LINK NE2 HIS A 62 NI NI A 509 1555 1555 2.20 LINK NE2 HIS A 64 NI NI A 509 1555 1555 2.11 LINK SG CYS A 91 NI NI A 509 1555 1555 2.50 LINK SG CYS A 91 NI NI A 510 1555 1555 2.44 LINK ND1 HIS A 216 NI NI A 510 1555 1555 2.12 LINK NE2 HIS A 246 NI NI A 510 1555 1555 2.11 LINK O3 SO4 A 505 NI NI A 509 1555 1555 2.31 LINK O4 SO4 A 505 NI NI A 510 1555 1555 1.96 CISPEP 1 ASP A 106 PRO A 107 0 -0.22 CISPEP 2 ASP A 106 PRO A 107 0 -0.72 CISPEP 3 MET A 334 PRO A 335 0 -3.55 CRYST1 101.422 101.422 124.940 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009860 0.005693 0.000000 0.00000 SCALE2 0.000000 0.011385 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008004 0.00000 CONECT 463 3900 CONECT 480 3900 CONECT 691 3900 3901 CONECT 1676 3901 CONECT 1927 3901 CONECT 3864 3865 3866 CONECT 3865 3864 CONECT 3866 3864 3867 CONECT 3867 3866 CONECT 3868 3869 3870 CONECT 3869 3868 CONECT 3870 3868 3871 CONECT 3871 3870 CONECT 3872 3873 3874 CONECT 3873 3872 CONECT 3874 3872 3875 CONECT 3875 3874 CONECT 3876 3877 3878 CONECT 3877 3876 CONECT 3878 3876 3879 CONECT 3879 3878 CONECT 3880 3881 3882 3883 3884 CONECT 3881 3880 CONECT 3882 3880 CONECT 3883 3880 3900 CONECT 3884 3880 3901 CONECT 3885 3886 3887 3888 3889 CONECT 3886 3885 CONECT 3887 3885 CONECT 3888 3885 CONECT 3889 3885 CONECT 3890 3891 3892 3893 3894 CONECT 3891 3890 CONECT 3892 3890 CONECT 3893 3890 CONECT 3894 3890 CONECT 3895 3896 3897 3898 3899 CONECT 3896 3895 CONECT 3897 3895 CONECT 3898 3895 CONECT 3899 3895 CONECT 3900 463 480 691 3883 CONECT 3901 691 1676 1927 3884 MASTER 331 0 10 19 23 0 0 6 3795 1 43 38 END