HEADER OXIDOREDUCTASE 02-OCT-24 9GYR TITLE FERREDOXIN CNF LABELLED, OXIDISED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN-1, CHLOROPLASTIC; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FERREDOXIN I,FD I; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: TYR 37 REPLACED WITH CYANOPHENYLALANINE (4CF) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 3 ORGANISM_COMMON: SPINACH; SOURCE 4 ORGANISM_TAXID: 3562; SOURCE 5 GENE: PETF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METALLOPROTEIN IRON-SULFUR CLUSTER ELECTRON TRANSFER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.B.CARR,J.WEI,K.A.VINCENT REVDAT 3 30-JUL-25 9GYR 1 JRNL REVDAT 2 11-JUN-25 9GYR 1 JRNL REVDAT 1 28-MAY-25 9GYR 0 JRNL AUTH Z.DUAN,J.WEI,S.B.CARR,M.RAMIREZ,R.M.EVANS,P.A.ASH, JRNL AUTH 2 P.RODRIGUEZ-MACIA,A.SACHDEVA,K.A.VINCENT JRNL TITL CYANOPHENYLALANINE AS AN INFRARED PROBE FOR IRON-SULFUR JRNL TITL 2 CLUSTER REDOX STATE IN MULTICENTER METALLOENZYMES. JRNL REF CHEMBIOCHEM V. 26 00251 2025 JRNL REFN ESSN 1439-7633 JRNL PMID 40347495 JRNL DOI 10.1002/CBIC.202500251 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 18.790 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 147880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 7682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4200 - 2.9900 0.94 7139 429 0.1121 0.1510 REMARK 3 2 2.9900 - 2.3700 0.95 7042 394 0.1245 0.1555 REMARK 3 3 2.3700 - 2.0700 0.95 7067 402 0.1344 0.1492 REMARK 3 4 2.0700 - 1.8800 0.95 7081 373 0.1485 0.1516 REMARK 3 5 1.8800 - 1.7500 0.95 7011 345 0.1426 0.1381 REMARK 3 6 1.7500 - 1.6400 0.96 7102 307 0.1440 0.1435 REMARK 3 7 1.6400 - 1.5600 0.95 7061 386 0.1503 0.1612 REMARK 3 8 1.5600 - 1.4900 0.94 6942 425 0.1446 0.1426 REMARK 3 9 1.4900 - 1.4400 0.94 6960 443 0.1555 0.1582 REMARK 3 10 1.4400 - 1.3900 0.95 7005 384 0.1640 0.1671 REMARK 3 11 1.3900 - 1.3400 0.94 7017 413 0.1661 0.1723 REMARK 3 12 1.3400 - 1.3000 0.95 6922 377 0.1763 0.1715 REMARK 3 13 1.3000 - 1.2700 0.95 7037 373 0.1773 0.1965 REMARK 3 14 1.2700 - 1.2400 0.95 6994 349 0.1899 0.1999 REMARK 3 15 1.2400 - 1.2100 0.95 6988 348 0.1926 0.1979 REMARK 3 16 1.2100 - 1.1900 0.94 6922 446 0.1963 0.1951 REMARK 3 17 1.1900 - 1.1600 0.95 7071 356 0.1965 0.2023 REMARK 3 18 1.1600 - 1.1400 0.95 6924 382 0.2071 0.2117 REMARK 3 19 1.1400 - 1.1200 0.95 7012 338 0.2121 0.2084 REMARK 3 20 1.1200 - 1.1000 0.94 6909 404 0.2221 0.2396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.647 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3183 REMARK 3 ANGLE : 0.748 4346 REMARK 3 CHIRALITY : 0.066 496 REMARK 3 PLANARITY : 0.004 578 REMARK 3 DIHEDRAL : 6.176 455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1292142191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.77 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 148067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RED PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA K PHOSPHATE PH 7-8 2.6-3.6 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.76600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 GLY B -7 REMARK 465 PRO B -6 REMARK 465 LEU B -5 REMARK 465 THR B 96 REMARK 465 ALA B 97 REMARK 465 GLY C -7 REMARK 465 PRO C -6 REMARK 465 LEU C -5 REMARK 465 GLY C -4 REMARK 465 GLY D -7 REMARK 465 PRO D -6 REMARK 465 ALA D 97 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 46 O HOH A 202 1.59 REMARK 500 O HOH C 246 O HOH C 347 1.87 REMARK 500 O HOH A 232 O HOH A 336 1.88 REMARK 500 O HOH C 240 O HOH D 362 1.92 REMARK 500 O HOH A 210 O HOH A 324 1.94 REMARK 500 O HOH B 217 O HOH B 329 1.95 REMARK 500 O HOH C 249 O HOH C 262 1.96 REMARK 500 O HOH D 341 O HOH D 347 1.97 REMARK 500 O HOH D 285 O HOH D 348 1.98 REMARK 500 O HOH A 218 O HOH A 228 1.99 REMARK 500 O HOH A 219 O HOH A 337 2.01 REMARK 500 O HOH D 330 O HOH D 361 2.01 REMARK 500 O HOH D 317 O HOH D 361 2.01 REMARK 500 O HOH D 315 O HOH D 325 2.02 REMARK 500 O HOH A 297 O HOH A 372 2.03 REMARK 500 O HOH C 286 O HOH C 324 2.04 REMARK 500 O HOH C 338 O HOH C 374 2.04 REMARK 500 O HOH A 392 O HOH B 328 2.06 REMARK 500 O HOH C 207 O HOH C 263 2.07 REMARK 500 O HOH D 331 O HOH D 334 2.07 REMARK 500 O HOH A 344 O HOH A 391 2.07 REMARK 500 O HOH D 203 O HOH D 252 2.07 REMARK 500 OE2 GLU C 31 O HOH C 201 2.07 REMARK 500 O HOH B 248 O HOH B 350 2.07 REMARK 500 OD1 ASP B 20 O HOH B 201 2.09 REMARK 500 O HOH A 355 O HOH A 360 2.10 REMARK 500 O HOH D 210 O HOH D 333 2.10 REMARK 500 O HOH A 289 O HOH A 343 2.11 REMARK 500 OE2 GLU B 31 O HOH B 202 2.12 REMARK 500 O LEU B 95 O HOH B 203 2.12 REMARK 500 OD1 ASP B 70 O HOH B 204 2.13 REMARK 500 O HOH B 281 O HOH B 381 2.13 REMARK 500 O HOH A 323 O HOH B 246 2.13 REMARK 500 O GLY A 32 O HOH A 201 2.14 REMARK 500 O HOH B 342 O HOH B 360 2.15 REMARK 500 O HOH C 256 O HOH C 278 2.15 REMARK 500 O HOH C 323 O HOH C 345 2.15 REMARK 500 O HOH A 306 O HOH A 342 2.16 REMARK 500 OE1 GLN B 17 O HOH B 205 2.16 REMARK 500 O HOH A 290 O HOH A 358 2.17 REMARK 500 OE2 GLU C 30 O HOH C 202 2.18 REMARK 500 O HOH A 299 O HOH A 381 2.19 REMARK 500 O HOH D 271 O HOH D 275 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 203 O HOH A 256 2545 1.92 REMARK 500 O HOH A 369 O HOH C 340 2545 1.97 REMARK 500 O HOH A 214 O HOH B 273 1656 1.97 REMARK 500 O HOH C 336 O HOH D 333 1454 1.97 REMARK 500 O HOH A 269 O HOH D 323 2545 2.01 REMARK 500 O HOH B 335 O HOH D 349 2545 2.05 REMARK 500 O HOH A 376 O HOH B 371 2555 2.07 REMARK 500 O HOH C 258 O HOH C 272 2455 2.11 REMARK 500 O HOH A 387 O HOH C 356 1655 2.12 REMARK 500 O HOH C 305 O HOH D 336 1454 2.16 REMARK 500 O HOH A 218 O HOH D 281 2545 2.17 REMARK 500 O HOH D 219 O HOH D 223 2556 2.18 REMARK 500 O HOH A 247 O HOH A 327 2545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 -71.38 -156.47 REMARK 500 SER B 38 -70.66 -143.80 REMARK 500 ARG B 40 19.37 58.30 REMARK 500 SER B 62 -22.80 -140.10 REMARK 500 SER C 38 -77.75 -145.29 REMARK 500 SER C 62 -30.36 -134.30 REMARK 500 SER D 38 -71.34 -145.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 397 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH C 378 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH D 380 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH D 381 DISTANCE = 6.53 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 FES A 101 S1 120.0 REMARK 620 3 FES A 101 S2 101.2 103.3 REMARK 620 4 CYS A 44 SG 104.4 110.1 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 47 SG REMARK 620 2 FES A 101 S1 113.2 REMARK 620 3 FES A 101 S2 110.3 104.7 REMARK 620 4 CYS A 77 SG 108.5 118.2 101.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 39 SG REMARK 620 2 FES B 101 S1 117.4 REMARK 620 3 FES B 101 S2 100.0 104.1 REMARK 620 4 CYS B 44 SG 106.2 110.7 118.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 47 SG REMARK 620 2 FES B 101 S1 115.0 REMARK 620 3 FES B 101 S2 110.3 104.5 REMARK 620 4 CYS B 77 SG 107.5 115.3 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES C 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 39 SG REMARK 620 2 FES C 101 S1 119.4 REMARK 620 3 FES C 101 S2 101.1 103.9 REMARK 620 4 CYS C 44 SG 105.6 109.6 117.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES C 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 47 SG REMARK 620 2 FES C 101 S1 113.4 REMARK 620 3 FES C 101 S2 110.1 104.4 REMARK 620 4 CYS C 77 SG 106.5 119.0 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 39 SG REMARK 620 2 FES D 101 S1 118.7 REMARK 620 3 FES D 101 S2 101.8 103.7 REMARK 620 4 CYS D 44 SG 104.8 109.0 119.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 47 SG REMARK 620 2 FES D 101 S1 113.0 REMARK 620 3 FES D 101 S2 110.2 104.5 REMARK 620 4 CYS D 77 SG 107.8 116.7 104.1 REMARK 620 N 1 2 3 DBREF 9GYR A 1 97 UNP P00221 FER1_SPIOL 51 147 DBREF 9GYR B 1 97 UNP P00221 FER1_SPIOL 51 147 DBREF 9GYR C 1 97 UNP P00221 FER1_SPIOL 51 147 DBREF 9GYR D 1 97 UNP P00221 FER1_SPIOL 51 147 SEQADV 9GYR GLY A -7 UNP P00221 EXPRESSION TAG SEQADV 9GYR PRO A -6 UNP P00221 EXPRESSION TAG SEQADV 9GYR LEU A -5 UNP P00221 EXPRESSION TAG SEQADV 9GYR GLY A -4 UNP P00221 EXPRESSION TAG SEQADV 9GYR SER A -3 UNP P00221 EXPRESSION TAG SEQADV 9GYR PRO A -2 UNP P00221 EXPRESSION TAG SEQADV 9GYR GLU A -1 UNP P00221 EXPRESSION TAG SEQADV 9GYR PHE A 0 UNP P00221 EXPRESSION TAG SEQADV 9GYR 4CF A 37 UNP P00221 TYR 87 ENGINEERED MUTATION SEQADV 9GYR GLY B -7 UNP P00221 EXPRESSION TAG SEQADV 9GYR PRO B -6 UNP P00221 EXPRESSION TAG SEQADV 9GYR LEU B -5 UNP P00221 EXPRESSION TAG SEQADV 9GYR GLY B -4 UNP P00221 EXPRESSION TAG SEQADV 9GYR SER B -3 UNP P00221 EXPRESSION TAG SEQADV 9GYR PRO B -2 UNP P00221 EXPRESSION TAG SEQADV 9GYR GLU B -1 UNP P00221 EXPRESSION TAG SEQADV 9GYR PHE B 0 UNP P00221 EXPRESSION TAG SEQADV 9GYR 4CF B 37 UNP P00221 TYR 87 ENGINEERED MUTATION SEQADV 9GYR GLY C -7 UNP P00221 EXPRESSION TAG SEQADV 9GYR PRO C -6 UNP P00221 EXPRESSION TAG SEQADV 9GYR LEU C -5 UNP P00221 EXPRESSION TAG SEQADV 9GYR GLY C -4 UNP P00221 EXPRESSION TAG SEQADV 9GYR SER C -3 UNP P00221 EXPRESSION TAG SEQADV 9GYR PRO C -2 UNP P00221 EXPRESSION TAG SEQADV 9GYR GLU C -1 UNP P00221 EXPRESSION TAG SEQADV 9GYR PHE C 0 UNP P00221 EXPRESSION TAG SEQADV 9GYR 4CF C 37 UNP P00221 TYR 87 ENGINEERED MUTATION SEQADV 9GYR GLY D -7 UNP P00221 EXPRESSION TAG SEQADV 9GYR PRO D -6 UNP P00221 EXPRESSION TAG SEQADV 9GYR LEU D -5 UNP P00221 EXPRESSION TAG SEQADV 9GYR GLY D -4 UNP P00221 EXPRESSION TAG SEQADV 9GYR SER D -3 UNP P00221 EXPRESSION TAG SEQADV 9GYR PRO D -2 UNP P00221 EXPRESSION TAG SEQADV 9GYR GLU D -1 UNP P00221 EXPRESSION TAG SEQADV 9GYR PHE D 0 UNP P00221 EXPRESSION TAG SEQADV 9GYR 4CF D 37 UNP P00221 TYR 87 ENGINEERED MUTATION SEQRES 1 A 105 GLY PRO LEU GLY SER PRO GLU PHE ALA ALA TYR LYS VAL SEQRES 2 A 105 THR LEU VAL THR PRO THR GLY ASN VAL GLU PHE GLN CYS SEQRES 3 A 105 PRO ASP ASP VAL TYR ILE LEU ASP ALA ALA GLU GLU GLU SEQRES 4 A 105 GLY ILE ASP LEU PRO 4CF SER CYS ARG ALA GLY SER CYS SEQRES 5 A 105 SER SER CYS ALA GLY LYS LEU LYS THR GLY SER LEU ASN SEQRES 6 A 105 GLN ASP ASP GLN SER PHE LEU ASP ASP ASP GLN ILE ASP SEQRES 7 A 105 GLU GLY TRP VAL LEU THR CYS ALA ALA TYR PRO VAL SER SEQRES 8 A 105 ASP VAL THR ILE GLU THR HIS LYS GLU GLU GLU LEU THR SEQRES 9 A 105 ALA SEQRES 1 B 105 GLY PRO LEU GLY SER PRO GLU PHE ALA ALA TYR LYS VAL SEQRES 2 B 105 THR LEU VAL THR PRO THR GLY ASN VAL GLU PHE GLN CYS SEQRES 3 B 105 PRO ASP ASP VAL TYR ILE LEU ASP ALA ALA GLU GLU GLU SEQRES 4 B 105 GLY ILE ASP LEU PRO 4CF SER CYS ARG ALA GLY SER CYS SEQRES 5 B 105 SER SER CYS ALA GLY LYS LEU LYS THR GLY SER LEU ASN SEQRES 6 B 105 GLN ASP ASP GLN SER PHE LEU ASP ASP ASP GLN ILE ASP SEQRES 7 B 105 GLU GLY TRP VAL LEU THR CYS ALA ALA TYR PRO VAL SER SEQRES 8 B 105 ASP VAL THR ILE GLU THR HIS LYS GLU GLU GLU LEU THR SEQRES 9 B 105 ALA SEQRES 1 C 105 GLY PRO LEU GLY SER PRO GLU PHE ALA ALA TYR LYS VAL SEQRES 2 C 105 THR LEU VAL THR PRO THR GLY ASN VAL GLU PHE GLN CYS SEQRES 3 C 105 PRO ASP ASP VAL TYR ILE LEU ASP ALA ALA GLU GLU GLU SEQRES 4 C 105 GLY ILE ASP LEU PRO 4CF SER CYS ARG ALA GLY SER CYS SEQRES 5 C 105 SER SER CYS ALA GLY LYS LEU LYS THR GLY SER LEU ASN SEQRES 6 C 105 GLN ASP ASP GLN SER PHE LEU ASP ASP ASP GLN ILE ASP SEQRES 7 C 105 GLU GLY TRP VAL LEU THR CYS ALA ALA TYR PRO VAL SER SEQRES 8 C 105 ASP VAL THR ILE GLU THR HIS LYS GLU GLU GLU LEU THR SEQRES 9 C 105 ALA SEQRES 1 D 105 GLY PRO LEU GLY SER PRO GLU PHE ALA ALA TYR LYS VAL SEQRES 2 D 105 THR LEU VAL THR PRO THR GLY ASN VAL GLU PHE GLN CYS SEQRES 3 D 105 PRO ASP ASP VAL TYR ILE LEU ASP ALA ALA GLU GLU GLU SEQRES 4 D 105 GLY ILE ASP LEU PRO 4CF SER CYS ARG ALA GLY SER CYS SEQRES 5 D 105 SER SER CYS ALA GLY LYS LEU LYS THR GLY SER LEU ASN SEQRES 6 D 105 GLN ASP ASP GLN SER PHE LEU ASP ASP ASP GLN ILE ASP SEQRES 7 D 105 GLU GLY TRP VAL LEU THR CYS ALA ALA TYR PRO VAL SER SEQRES 8 D 105 ASP VAL THR ILE GLU THR HIS LYS GLU GLU GLU LEU THR SEQRES 9 D 105 ALA HET 4CF A 37 20 HET 4CF B 37 20 HET 4CF C 37 20 HET 4CF D 37 20 HET FES A 101 4 HET FES B 101 4 HET FES C 101 4 HET FES D 101 4 HETNAM 4CF 4-CYANO-L-PHENYLALANINE HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 1 4CF 4(C10 H10 N2 O2) FORMUL 5 FES 4(FE2 S2) FORMUL 9 HOH *740(H2 O) HELIX 1 AA1 TYR A 23 GLU A 31 1 9 HELIX 2 AA2 ASP A 65 GLU A 71 1 7 HELIX 3 AA3 LYS A 91 LEU A 95 5 5 HELIX 4 AA4 TYR B 23 GLU B 31 1 9 HELIX 5 AA5 ASP B 65 GLU B 71 1 7 HELIX 6 AA6 CYS B 77 ALA B 79 5 3 HELIX 7 AA7 TYR C 23 GLU C 31 1 9 HELIX 8 AA8 ASP C 65 GLU C 71 1 7 HELIX 9 AA9 LYS C 91 LEU C 95 5 5 HELIX 10 AB1 TYR D 23 GLU D 31 1 9 HELIX 11 AB2 ASP D 65 GLU D 71 1 7 HELIX 12 AB3 CYS D 77 ALA D 79 5 3 HELIX 13 AB4 LYS D 91 THR D 96 1 6 SHEET 1 AA1 5 GLY A 12 PRO A 19 0 SHEET 2 AA1 5 ALA A 2 THR A 9 -1 N LEU A 7 O VAL A 14 SHEET 3 AA1 5 VAL A 85 GLU A 88 1 O ILE A 87 N VAL A 8 SHEET 4 AA1 5 ALA A 48 THR A 53 -1 N LYS A 52 O THR A 86 SHEET 5 AA1 5 TRP A 73 LEU A 75 -1 O VAL A 74 N GLY A 49 SHEET 1 AA2 2 LEU A 56 ASN A 57 0 SHEET 2 AA2 2 TYR A 80 PRO A 81 -1 O TYR A 80 N ASN A 57 SHEET 1 AA3 5 GLY B 12 PRO B 19 0 SHEET 2 AA3 5 ALA B 2 THR B 9 -1 N VAL B 5 O PHE B 16 SHEET 3 AA3 5 VAL B 85 GLU B 88 1 O VAL B 85 N THR B 6 SHEET 4 AA3 5 ALA B 48 THR B 53 -1 N LYS B 52 O THR B 86 SHEET 5 AA3 5 TRP B 73 LEU B 75 -1 O VAL B 74 N GLY B 49 SHEET 1 AA4 2 LEU B 56 ASN B 57 0 SHEET 2 AA4 2 TYR B 80 PRO B 81 -1 O TYR B 80 N ASN B 57 SHEET 1 AA5 5 GLY C 12 PRO C 19 0 SHEET 2 AA5 5 ALA C 2 THR C 9 -1 N TYR C 3 O CYS C 18 SHEET 3 AA5 5 VAL C 85 GLU C 88 1 O VAL C 85 N THR C 6 SHEET 4 AA5 5 ALA C 48 THR C 53 -1 N LYS C 52 O THR C 86 SHEET 5 AA5 5 TRP C 73 LEU C 75 -1 O VAL C 74 N GLY C 49 SHEET 1 AA6 2 LEU C 56 ASN C 57 0 SHEET 2 AA6 2 TYR C 80 PRO C 81 -1 O TYR C 80 N ASN C 57 SHEET 1 AA7 5 GLY D 12 PRO D 19 0 SHEET 2 AA7 5 ALA D 2 THR D 9 -1 N VAL D 5 O PHE D 16 SHEET 3 AA7 5 VAL D 85 GLU D 88 1 O VAL D 85 N THR D 6 SHEET 4 AA7 5 ALA D 48 THR D 53 -1 N LYS D 52 O THR D 86 SHEET 5 AA7 5 TRP D 73 LEU D 75 -1 O VAL D 74 N GLY D 49 SHEET 1 AA8 2 LEU D 56 ASN D 57 0 SHEET 2 AA8 2 TYR D 80 PRO D 81 -1 O TYR D 80 N ASN D 57 LINK C PRO A 36 N 4CF A 37 1555 1555 1.33 LINK C 4CF A 37 N SER A 38 1555 1555 1.33 LINK C PRO B 36 N 4CF B 37 1555 1555 1.33 LINK C 4CF B 37 N SER B 38 1555 1555 1.33 LINK C PRO C 36 N 4CF C 37 1555 1555 1.33 LINK C 4CF C 37 N SER C 38 1555 1555 1.33 LINK C PRO D 36 N 4CF D 37 1555 1555 1.32 LINK C 4CF D 37 N SER D 38 1555 1555 1.33 LINK SG CYS A 39 FE1 FES A 101 1555 1555 2.31 LINK SG CYS A 44 FE1 FES A 101 1555 1555 2.30 LINK SG CYS A 47 FE2 FES A 101 1555 1555 2.28 LINK SG CYS A 77 FE2 FES A 101 1555 1555 2.31 LINK SG CYS B 39 FE1 FES B 101 1555 1555 2.33 LINK SG CYS B 44 FE1 FES B 101 1555 1555 2.29 LINK SG CYS B 47 FE2 FES B 101 1555 1555 2.30 LINK SG CYS B 77 FE2 FES B 101 1555 1555 2.30 LINK SG CYS C 39 FE1 FES C 101 1555 1555 2.33 LINK SG CYS C 44 FE1 FES C 101 1555 1555 2.30 LINK SG CYS C 47 FE2 FES C 101 1555 1555 2.30 LINK SG CYS C 77 FE2 FES C 101 1555 1555 2.30 LINK SG CYS D 39 FE1 FES D 101 1555 1555 2.32 LINK SG CYS D 44 FE1 FES D 101 1555 1555 2.30 LINK SG CYS D 47 FE2 FES D 101 1555 1555 2.31 LINK SG CYS D 77 FE2 FES D 101 1555 1555 2.32 CRYST1 58.834 61.532 58.843 90.00 119.24 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016997 0.000000 0.009515 0.00000 SCALE2 0.000000 0.016252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019476 0.00000 CONECT 593 606 CONECT 605 607 610 625 CONECT 606 593 610 CONECT 607 605 CONECT 608 609 613 CONECT 609 608 CONECT 610 605 606 611 618 CONECT 611 610 612 619 620 CONECT 612 611 614 615 CONECT 613 608 616 617 CONECT 614 612 616 621 CONECT 615 612 617 622 CONECT 616 613 614 623 CONECT 617 613 615 624 CONECT 618 610 CONECT 619 611 CONECT 620 611 CONECT 621 614 CONECT 622 615 CONECT 623 616 CONECT 624 617 CONECT 625 605 CONECT 641 5960 CONECT 703 5960 CONECT 743 5961 CONECT 1185 5961 CONECT 2086 2099 CONECT 2098 2100 2103 2118 CONECT 2099 2086 2103 CONECT 2100 2098 CONECT 2101 2102 2106 CONECT 2102 2101 CONECT 2103 2098 2099 2104 2111 CONECT 2104 2103 2105 2112 2113 CONECT 2105 2104 2107 2108 CONECT 2106 2101 2109 2110 CONECT 2107 2105 2109 2114 CONECT 2108 2105 2110 2115 CONECT 2109 2106 2107 2116 CONECT 2110 2106 2108 2117 CONECT 2111 2103 CONECT 2112 2104 CONECT 2113 2104 CONECT 2114 2107 CONECT 2115 2108 CONECT 2116 2109 CONECT 2117 2110 CONECT 2118 2098 CONECT 2134 5964 CONECT 2207 5964 CONECT 2248 5965 CONECT 2690 5965 CONECT 3559 3572 CONECT 3571 3573 3576 3591 CONECT 3572 3559 3576 CONECT 3573 3571 CONECT 3574 3575 3579 CONECT 3575 3574 CONECT 3576 3571 3572 3577 3584 CONECT 3577 3576 3578 3585 3586 CONECT 3578 3577 3580 3581 CONECT 3579 3574 3582 3583 CONECT 3580 3578 3582 3587 CONECT 3581 3578 3583 3588 CONECT 3582 3579 3580 3589 CONECT 3583 3579 3581 3590 CONECT 3584 3576 CONECT 3585 3577 CONECT 3586 3577 CONECT 3587 3580 CONECT 3588 3581 CONECT 3589 3582 CONECT 3590 3583 CONECT 3591 3571 CONECT 3607 5968 CONECT 3669 5968 CONECT 3709 5969 CONECT 4151 5969 CONECT 5061 5074 CONECT 5073 5075 5078 5093 CONECT 5074 5061 5078 CONECT 5075 5073 CONECT 5076 5077 5081 CONECT 5077 5076 CONECT 5078 5073 5074 5079 5086 CONECT 5079 5078 5080 5087 5088 CONECT 5080 5079 5082 5083 CONECT 5081 5076 5084 5085 CONECT 5082 5080 5084 5089 CONECT 5083 5080 5085 5090 CONECT 5084 5081 5082 5091 CONECT 5085 5081 5083 5092 CONECT 5086 5078 CONECT 5087 5079 CONECT 5088 5079 CONECT 5089 5082 CONECT 5090 5083 CONECT 5091 5084 CONECT 5092 5085 CONECT 5093 5073 CONECT 5109 5972 CONECT 5171 5972 CONECT 5211 5973 CONECT 5665 5973 CONECT 5960 641 703 5962 5963 CONECT 5961 743 1185 5962 5963 CONECT 5962 5960 5961 CONECT 5963 5960 5961 CONECT 5964 2134 2207 5966 5967 CONECT 5965 2248 2690 5966 5967 CONECT 5966 5964 5965 CONECT 5967 5964 5965 CONECT 5968 3607 3669 5970 5971 CONECT 5969 3709 4151 5970 5971 CONECT 5970 5968 5969 CONECT 5971 5968 5969 CONECT 5972 5109 5171 5974 5975 CONECT 5973 5211 5665 5974 5975 CONECT 5974 5972 5973 CONECT 5975 5972 5973 MASTER 441 0 8 13 28 0 0 6 3820 4 120 36 END