HEADER TRANSPORT PROTEIN 08-OCT-24 9H0O TITLE FUCOSYLATED LACTO-N-BIOSE BINDING PROTEIN FROM BIFIDOBACTERIUM LONGUM TITLE 2 SUBSP. INFANTIS IN COMPLEX WITH LACTO-N-BIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR SOLUTE-BINDING PROTEIN, FAMILY 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS; SOURCE 3 ORGANISM_TAXID: 1682; SOURCE 4 GENE: BLON_0883; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SOLUTE BINDING PROTEIN, ABC IMPORTER, HMO CAPTURE, BIFIDOBACTERIUM KEYWDS 2 LONGUM SUBSP. INFANTIS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.JENSEN,M.E.HANSEN,H.SAKANAKA,D.J.SLOTBOOM,M.ABOU HACHEM,J.P.MORTH REVDAT 3 27-AUG-25 9H0O 1 JRNL REVDAT 2 23-JUL-25 9H0O 1 JRNL REVDAT 1 02-JUL-25 9H0O 0 JRNL AUTH M.EJBY HANSEN,M.SAKANAKA,M.JENSEN,H.SAKANAKA,M.J.PICHLER, JRNL AUTH 2 S.MAEDA,J.FRANCK HOVRING,A.NAKAJIMA,S.KUNSTMANN,T.S.NIELSEN, JRNL AUTH 3 G.H.J.PETERS,D.J.SLOTBOOM,J.P.MORTH,T.KATAYAMA,M.ABOU HACHEM JRNL TITL UPTAKE OF FUCOSYLATED TYPE I HUMAN MILK OLIGOSACCHARIDE JRNL TITL 2 BLOCKS BY BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS. JRNL REF MBIO V. 16 36825 2025 JRNL REFN ESSN 2150-7511 JRNL PMID 40657901 JRNL DOI 10.1128/MBIO.00368-25 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 21409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5800 - 5.1700 0.99 2801 152 0.1660 0.1918 REMARK 3 2 5.1700 - 4.1000 1.00 2830 156 0.1533 0.1696 REMARK 3 3 4.1000 - 3.5800 0.98 2770 147 0.1639 0.2138 REMARK 3 4 3.5800 - 3.2600 0.99 2816 150 0.1795 0.2396 REMARK 3 5 3.2600 - 3.0200 0.99 2796 146 0.2081 0.2474 REMARK 3 6 3.0200 - 2.8400 0.99 2821 148 0.2206 0.2403 REMARK 3 7 2.8400 - 2.7000 0.99 2800 143 0.2197 0.2719 REMARK 3 8 2.7000 - 2.5800 0.99 2781 149 0.2358 0.3043 REMARK 3 9 2.5800 - 2.4800 0.99 2806 148 0.2448 0.2736 REMARK 3 10 2.4800 - 2.4000 0.99 2779 150 0.2619 0.3022 REMARK 3 11 2.4000 - 2.3200 0.97 2794 150 0.2918 0.3328 REMARK 3 12 2.3200 - 2.2600 0.94 2617 134 0.3222 0.3187 REMARK 3 13 2.2600 - 2.2000 0.85 2423 125 0.3469 0.3397 REMARK 3 14 2.2000 - 2.1400 0.67 1906 102 0.3887 0.4084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.317 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.844 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 3261 REMARK 3 ANGLE : 0.378 4425 REMARK 3 CHIRALITY : 0.036 493 REMARK 3 PLANARITY : 0.003 563 REMARK 3 DIHEDRAL : 10.172 1224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5136 36.8870 50.1739 REMARK 3 T TENSOR REMARK 3 T11: 0.4395 T22: 0.4396 REMARK 3 T33: 0.3828 T12: 0.0300 REMARK 3 T13: 0.0001 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5054 L22: 0.0931 REMARK 3 L33: 0.2495 L12: 0.0829 REMARK 3 L13: 0.3258 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.2599 S13: 0.1561 REMARK 3 S21: 0.2291 S22: 0.0116 S23: -0.0648 REMARK 3 S31: -0.3180 S32: 0.3476 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9444 46.8100 58.7417 REMARK 3 T TENSOR REMARK 3 T11: 0.6353 T22: 0.5547 REMARK 3 T33: 0.5694 T12: -0.0674 REMARK 3 T13: 0.0504 T23: -0.0913 REMARK 3 L TENSOR REMARK 3 L11: 0.1079 L22: 0.0079 REMARK 3 L33: 0.0534 L12: 0.0077 REMARK 3 L13: 0.0208 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: -0.1362 S13: 0.2412 REMARK 3 S21: 0.1125 S22: 0.2294 S23: -0.0187 REMARK 3 S31: -0.0169 S32: 0.1294 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1712 27.5310 55.3348 REMARK 3 T TENSOR REMARK 3 T11: 0.3629 T22: 0.3710 REMARK 3 T33: 0.3542 T12: 0.0588 REMARK 3 T13: -0.0102 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4536 L22: 0.6612 REMARK 3 L33: 0.5546 L12: 0.1059 REMARK 3 L13: -0.1013 L23: 0.4669 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.0235 S13: 0.0404 REMARK 3 S21: 0.0608 S22: -0.0289 S23: 0.0909 REMARK 3 S31: -0.0586 S32: -0.0218 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8371 29.7388 61.6792 REMARK 3 T TENSOR REMARK 3 T11: 0.3926 T22: 0.4501 REMARK 3 T33: 0.5859 T12: 0.0556 REMARK 3 T13: 0.0736 T23: 0.0887 REMARK 3 L TENSOR REMARK 3 L11: 0.1386 L22: 0.0795 REMARK 3 L33: 0.0873 L12: 0.0243 REMARK 3 L13: 0.0255 L23: 0.0834 REMARK 3 S TENSOR REMARK 3 S11: 0.1840 S12: 0.1128 S13: 0.0624 REMARK 3 S21: 0.1527 S22: 0.0081 S23: 0.5495 REMARK 3 S31: 0.0441 S32: -0.0874 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0891 25.0166 58.5152 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.3711 REMARK 3 T33: 0.3529 T12: 0.0255 REMARK 3 T13: 0.0207 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.4119 L22: 0.1805 REMARK 3 L33: 0.2552 L12: 0.0085 REMARK 3 L13: -0.0211 L23: -0.2134 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.0158 S13: -0.0442 REMARK 3 S21: 0.1262 S22: 0.0189 S23: -0.0548 REMARK 3 S31: -0.1006 S32: -0.0319 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0083 30.0338 58.6637 REMARK 3 T TENSOR REMARK 3 T11: 0.4357 T22: 0.3785 REMARK 3 T33: 0.4404 T12: 0.0283 REMARK 3 T13: 0.0576 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.5539 L22: 0.6115 REMARK 3 L33: 0.4018 L12: 0.0617 REMARK 3 L13: 0.1933 L23: -0.4292 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: -0.0555 S13: -0.0373 REMARK 3 S21: 0.0791 S22: 0.1751 S23: 0.1772 REMARK 3 S31: -0.0240 S32: -0.0237 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9H0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1292142119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 49.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1 M TRIS PH 7.0, 30% REMARK 280 PEG3000 + TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.03500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.65950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.65950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.03500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 LACTO-N-BIOSE I (LNB; GAL-BETA-1-3GLCNAC; GALB1-3GLCNAC) REMARK 400 DISACCHARIDE IS PRESENT AS A CORE UNIT OF TYPE-1 BLOOD GROUP REMARK 400 ANTIGENS OF ANIMAL GLYCOCONJUGATES AND MILK OLIGOSACCHARIDES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 PHE A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 VAL A 10 REMARK 465 ILE A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 MET A 19 REMARK 465 LEU A 20 REMARK 465 PHE A 21 REMARK 465 SER A 22 REMARK 465 VAL A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 CYS A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 28 REMARK 465 VAL A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 465 SER A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 ALA A 443 REMARK 465 LYS A 444 REMARK 465 GLN A 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 89 73.53 -101.71 REMARK 500 LEU A 96 104.75 -161.21 REMARK 500 ASN A 129 46.67 -106.15 REMARK 500 ASN A 146 76.76 -112.92 REMARK 500 TYR A 159 179.51 65.04 REMARK 500 TYR A 160 57.33 -162.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 289 OG1 REMARK 620 2 GLY A 361 O 94.1 REMARK 620 3 TYR A 381 OH 120.4 143.9 REMARK 620 4 HOH A 706 O 100.3 84.1 98.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 360 O REMARK 620 2 ASP A 376 OD2 159.1 REMARK 620 3 HOH A 685 O 95.5 63.8 REMARK 620 4 HOH A 690 O 52.0 139.8 119.5 REMARK 620 5 HOH A 858 O 89.2 96.4 114.3 114.2 REMARK 620 N 1 2 3 4 DBREF 9H0O A 1 445 UNP B7GQA3 B7GQA3_BIFLS 1 445 SEQRES 1 A 445 MET THR HIS PHE SER THR VAL LYS ARG VAL ILE ALA LEU SEQRES 2 A 445 ALA GLY ALA GLY ALA MET LEU PHE SER VAL ALA ALA CYS SEQRES 3 A 445 GLY GLY VAL THR ALA SER ASP GLY GLY LYS THR THR LEU SEQRES 4 A 445 LYS PHE ALA ALA PHE GLU GLY GLY TYR GLY ALA ASP MET SEQRES 5 A 445 TYR LYS GLU VAL VAL ALA ALA TYR GLU LYS LEU ASN PRO SEQRES 6 A 445 ASP VAL LYS ILE GLU LEU THR THR SER LYS LYS ILE GLU SEQRES 7 A 445 ASP GLU ILE THR PRO GLY MET LYS ALA GLY ASN TYR PRO SEQRES 8 A 445 ASP ILE VAL GLU LEU GLY GLN GLY SER THR SER GLY LEU SEQRES 9 A 445 THR GLU THR LEU LEU LYS ASP LYS ALA ILE GLU ASP VAL SEQRES 10 A 445 THR ASP VAL LEU ASP MET LYS VAL PRO GLY GLU ASN LYS SEQRES 11 A 445 THR VAL LYS ASP LYS LEU VAL ASP GLY VAL ILE GLY LEU SEQRES 12 A 445 TYR THR ASN PRO TYR GLY GLY ASP LYS THR TYR LEU MET SEQRES 13 A 445 PRO MET TYR TYR SER PRO SER GLY LEU VAL TYR ASN LYS SEQRES 14 A 445 THR LEU LEU GLU GLN ASN GLY TRP LYS MET PRO THR THR SEQRES 15 A 445 TRP ASP GLU MET PHE LYS LEU GLY ASP GLU ALA LYS ALA SEQRES 16 A 445 LYS GLY ILE SER LEU PHE THR TYR PRO THR ALA GLY TYR SEQRES 17 A 445 PHE ASP ALA PHE PHE ASN ALA LEU LEU ALA ASP ILE GLY SEQRES 18 A 445 GLY ASP GLN PHE TYR GLN ASP VAL MET THR TYR LYS LYS SEQRES 19 A 445 ASP VAL TRP LYS THR ASP GLU ALA LYS GLU ALA LEU GLU SEQRES 20 A 445 THR THR TYR LYS LEU VAL THR GLU TYR LEU ASN PRO ASP SEQRES 21 A 445 THR VAL GLY TYR ALA ASN ALA GLN ASP PHE THR LYS ASN SEQRES 22 A 445 GLN GLN SER ILE LEU ASP GLY LYS SER LEU PHE MET PRO SEQRES 23 A 445 ASN GLY THR TRP ILE VAL ASN GLU MET LYS ASP ALA PRO SEQRES 24 A 445 ARG THR SER GLY PHE GLU TRP GLY PHE ALA PRO VAL PRO SEQRES 25 A 445 THR VAL LYS ASN GLY GLY THR ARG TYR ILE ASN THR THR SEQRES 26 A 445 ILE GLU ALA VAL TRP ILE PRO ALA LYS ALA LYS ASN LYS SEQRES 27 A 445 GLU ALA ALA LYS LYS PHE MET ALA TYR LEU TYR SER ASP SEQRES 28 A 445 GLU ALA ALA SER ILE PHE ALA LYS THR GLY ALA ILE GLN SEQRES 29 A 445 PRO ILE LYS GLY ASN THR ASP ASP LEU ALA SER ASP MET SEQRES 30 A 445 LYS VAL PHE TYR ASP ALA TYR ASN GLU ASP ASN VAL LYS SEQRES 31 A 445 ALA VAL ALA GLY SER PHE SER ALA THR ALA THR VAL GLU SEQRES 32 A 445 GLY LYS ASN ILE LYS ASP ASP LEU TYR ASN ALA VAL ASP SEQRES 33 A 445 SER VAL ALA SER GLY LYS THR THR LEU GLN GLN TRP GLN SEQRES 34 A 445 ASP LYS LEU ASN GLU THR SER ASN ALA LEU ASN ALA ALA SEQRES 35 A 445 ALA LYS GLN HET NDG B 1 15 HET GAL B 2 11 HET CA A 501 1 HET SO4 A 502 5 HET NA A 503 1 HET NA A 504 1 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 NDG C8 H15 N O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *363(H2 O) HELIX 1 AA1 ALA A 50 ASN A 64 1 15 HELIX 2 AA2 LYS A 76 ALA A 87 1 12 HELIX 3 AA3 GLY A 103 ASP A 111 1 9 HELIX 4 AA4 VAL A 117 MET A 123 5 7 HELIX 5 AA5 THR A 131 LEU A 136 1 6 HELIX 6 AA6 LYS A 169 ASN A 175 1 7 HELIX 7 AA7 THR A 182 ALA A 195 1 14 HELIX 8 AA8 THR A 205 GLY A 207 5 3 HELIX 9 AA9 TYR A 208 GLY A 221 1 14 HELIX 10 AB1 GLY A 222 THR A 231 1 10 HELIX 11 AB2 THR A 239 TYR A 256 1 18 HELIX 12 AB3 ASP A 260 ALA A 265 1 6 HELIX 13 AB4 ASP A 269 ASP A 279 1 11 HELIX 14 AB5 TRP A 290 MET A 295 1 6 HELIX 15 AB6 ASN A 337 LEU A 348 1 12 HELIX 16 AB7 SER A 350 ALA A 358 1 9 HELIX 17 AB8 LYS A 359 GLY A 361 5 3 HELIX 18 AB9 ALA A 374 ASP A 382 1 9 HELIX 19 AC1 ALA A 383 GLU A 386 5 4 HELIX 20 AC2 ASN A 406 TYR A 412 1 7 HELIX 21 AC3 ASN A 413 SER A 420 1 8 HELIX 22 AC4 THR A 424 ALA A 442 1 19 SHEET 1 AA1 6 VAL A 67 SER A 74 0 SHEET 2 AA1 6 THR A 37 PHE A 44 1 N LEU A 39 O LYS A 68 SHEET 3 AA1 6 ILE A 93 GLU A 95 1 O GLU A 95 N ALA A 42 SHEET 4 AA1 6 ARG A 320 TRP A 330 -1 O TRP A 330 N VAL A 94 SHEET 5 AA1 6 MET A 156 ASN A 168 -1 N MET A 158 O GLU A 327 SHEET 6 AA1 6 TRP A 306 ALA A 309 -1 O GLY A 307 N TYR A 167 SHEET 1 AA2 5 SER A 199 PHE A 201 0 SHEET 2 AA2 5 SER A 282 GLY A 288 1 O PHE A 284 N LEU A 200 SHEET 3 AA2 5 MET A 156 ASN A 168 -1 N VAL A 166 O MET A 285 SHEET 4 AA2 5 ARG A 320 TRP A 330 -1 O GLU A 327 N MET A 158 SHEET 5 AA2 5 VAL A 389 VAL A 392 1 O VAL A 392 N THR A 324 LINK O3 NDG B 1 C1 GAL B 2 1555 1555 1.40 LINK OG1 THR A 289 NA NA A 503 1555 1555 2.72 LINK O THR A 360 NA NA A 504 1555 1555 3.15 LINK O GLY A 361 NA NA A 503 1555 1555 2.43 LINK OD2 ASP A 376 NA NA A 504 1555 1555 2.79 LINK OH TYR A 381 NA NA A 503 1555 1555 2.93 LINK NA NA A 503 O HOH A 706 1555 1555 2.65 LINK NA NA A 504 O HOH A 685 1555 1555 3.18 LINK NA NA A 504 O HOH A 690 1555 1555 2.94 LINK NA NA A 504 O HOH A 858 1555 1555 2.50 CRYST1 50.070 52.560 149.319 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006697 0.00000 CONECT 1988 3196 CONECT 2546 3197 CONECT 2553 3196 CONECT 2661 3197 CONECT 2708 3196 CONECT 3164 3165 3172 3178 CONECT 3165 3164 3166 3177 CONECT 3166 3165 3167 3173 CONECT 3167 3166 3168 3174 CONECT 3168 3167 3169 3172 CONECT 3169 3168 3175 CONECT 3170 3171 3176 3177 CONECT 3171 3170 CONECT 3172 3164 3168 CONECT 3173 3166 3179 CONECT 3174 3167 CONECT 3175 3169 CONECT 3176 3170 CONECT 3177 3165 3170 CONECT 3178 3164 CONECT 3179 3173 3180 3188 CONECT 3180 3179 3181 3185 CONECT 3181 3180 3182 3186 CONECT 3182 3181 3183 3187 CONECT 3183 3182 3184 3188 CONECT 3184 3183 3189 CONECT 3185 3180 CONECT 3186 3181 CONECT 3187 3182 CONECT 3188 3179 3183 CONECT 3189 3184 CONECT 3191 3192 3193 3194 3195 CONECT 3192 3191 CONECT 3193 3191 CONECT 3194 3191 CONECT 3195 3191 CONECT 3196 1988 2553 2708 3303 CONECT 3197 2546 2661 3282 3287 CONECT 3197 3455 CONECT 3282 3197 CONECT 3287 3197 CONECT 3303 3196 CONECT 3455 3197 MASTER 406 0 6 22 11 0 0 6 3559 1 43 35 END