HEADER ISOMERASE 08-OCT-24 9H0S TITLE SCAFFOLD-LIGAND COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 44-207; COMPND 5 SYNONYM: PPIASE F,CYCLOPHILIN D,CYPD,CYCLOPHILIN F,MITOCHONDRIAL COMPND 6 CYCLOPHILIN,CYP-M,ROTAMASE F; COMPND 7 EC: 5.2.1.8; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ZACHARCHENKO,L.Y.LIAN REVDAT 2 17-DEC-25 9H0S 1 JRNL REVDAT 1 05-NOV-25 9H0S 0 SPRSDE 05-NOV-25 9H0S 6Y3E JRNL AUTH M.AWAIS,C.M.WOODLEY,L.GUO,M.ROGERS,N.KERSHAW,T.ZACHARCHENKO, JRNL AUTH 2 E.SHORE,A.KATTAKAYAM,R.MUKHERJEE,D.N.CRIDDLE,S.C.LEUNG, JRNL AUTH 3 H.LEE,J.BURGESS-MCCANN,K.LUZYANIN,N.G.BERRY,S.ANTONYUK, JRNL AUTH 4 L.Y.LIAN,R.SUTTON,P.M.O'NEILL JRNL TITL POTENT PREORGANIZED PYRAZOLIDINE CYCLOPHILIN D INHIBITORS JRNL TITL 2 PREVENT MITOCHONDRIAL AND ORGAN INJURY IN A MOUSE JRNL TITL 3 PANCREATITIS DISEASE MODEL. JRNL REF J.MED.CHEM. V. 68 23910 2025 JRNL REFN ISSN 0022-2623 JRNL PMID 41208336 JRNL DOI 10.1021/ACS.JMEDCHEM.5C01146 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.3860 - 3.4092 1.00 2767 156 0.1550 0.1685 REMARK 3 2 3.4092 - 2.7060 1.00 2616 145 0.1683 0.2012 REMARK 3 3 2.7060 - 2.3639 1.00 2597 131 0.1665 0.2006 REMARK 3 4 2.3639 - 2.1478 1.00 2545 148 0.1596 0.1978 REMARK 3 5 2.1478 - 1.9938 1.00 2528 159 0.1613 0.1874 REMARK 3 6 1.9938 - 1.8763 1.00 2523 134 0.1671 0.2106 REMARK 3 7 1.8763 - 1.7823 1.00 2494 144 0.1630 0.1715 REMARK 3 8 1.7823 - 1.7047 1.00 2520 157 0.1713 0.1946 REMARK 3 9 1.7047 - 1.6391 1.00 2503 128 0.1774 0.2076 REMARK 3 10 1.6391 - 1.5825 1.00 2517 135 0.1879 0.2301 REMARK 3 11 1.5825 - 1.5330 1.00 2475 139 0.1986 0.2645 REMARK 3 12 1.5330 - 1.4892 1.00 2511 117 0.2164 0.2477 REMARK 3 13 1.4892 - 1.4500 1.00 2468 145 0.2471 0.2731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1365 REMARK 3 ANGLE : 0.851 1826 REMARK 3 CHIRALITY : 0.082 191 REMARK 3 PLANARITY : 0.006 234 REMARK 3 DIHEDRAL : 14.869 514 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 165) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5477 -8.3654 -22.9960 REMARK 3 T TENSOR REMARK 3 T11: 0.2554 T22: 0.1041 REMARK 3 T33: 0.2070 T12: -0.0020 REMARK 3 T13: 0.1415 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0591 L22: 1.4719 REMARK 3 L33: 1.3913 L12: 0.1062 REMARK 3 L13: -0.3719 L23: -0.3737 REMARK 3 S TENSOR REMARK 3 S11: -0.1761 S12: 0.0964 S13: -0.2107 REMARK 3 S21: 0.2028 S22: -0.0797 S23: 0.1656 REMARK 3 S31: 0.2839 S32: -0.0520 S33: 0.1641 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ONE TLS GROUP FOR WHOLE CHAIN A REMARK 4 REMARK 4 9H0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1292142320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34902 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 51.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4O8H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M SODIUM ACETATE TRIHYDRATE,0.085 REMARK 280 M SODIUM CACODYLATE TRIHYDRATE PH 6.5,25.5% W/V POLYETHYLENE REMARK 280 GLYCOL 8,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.45500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.72500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.18250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.72500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.72750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.72500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.72500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.18250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.72500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.72500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.72750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.45500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 379 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 436 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 160 O HOH A 301 2.13 REMARK 500 O HOH A 381 O HOH A 403 2.17 REMARK 500 O2 EDO A 203 O HOH A 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 60 -81.70 -147.94 REMARK 500 THR A 119 55.67 -114.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 212 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 81 OG REMARK 620 2 HOH A 315 O 102.3 REMARK 620 3 HOH A 351 O 102.6 3.9 REMARK 620 4 HOH A 409 O 105.3 5.6 8.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9CK A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 212 DBREF 9H0S A 2 165 UNP P30405 PPIF_HUMAN 44 207 SEQADV 9H0S MET A 1 UNP P30405 INITIATING METHIONINE SEQADV 9H0S ILE A 133 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 A 165 MET GLY ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA ASN SEQRES 2 A 165 GLY LYS PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS ALA SEQRES 3 A 165 ASP VAL VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU SEQRES 4 A 165 CYS THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER THR SEQRES 5 A 165 PHE HIS ARG VAL ILE PRO SER PHE MET CYS GLN ALA GLY SEQRES 6 A 165 ASP PHE THR ASN HIS ASN GLY THR GLY GLY LYS SER ILE SEQRES 7 A 165 TYR GLY SER ARG PHE PRO ASP GLU ASN PHE THR LEU LYS SEQRES 8 A 165 HIS VAL GLY PRO GLY VAL LEU SER MET ALA ASN ALA GLY SEQRES 9 A 165 PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ILE SEQRES 10 A 165 LYS THR ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY SEQRES 11 A 165 HIS VAL ILE GLU GLY MET ASP VAL VAL LYS LYS ILE GLU SEQRES 12 A 165 SER PHE GLY SER LYS SER GLY ARG THR SER LYS LYS ILE SEQRES 13 A 165 VAL ILE THR ASP CYS GLY GLN LEU SER HET 9CK A 201 27 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET 1PE A 207 16 HET PGE A 208 10 HET PO4 A 209 5 HET NA A 210 1 HET NA A 211 1 HET NA A 212 1 HETNAM 9CK 1-[(4-AMINOPHENYL)METHYL]-3-[2-[2-(2-BROMOPHENYL) HETNAM 2 9CK PYRAZOLIDIN-1-YL]-2-OXIDANYLIDENE-ETHYL]UREA HETNAM EDO 1,2-ETHANEDIOL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 9CK C19 H22 BR N5 O2 FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 1PE C10 H22 O6 FORMUL 9 PGE C6 H14 O4 FORMUL 10 PO4 O4 P 3- FORMUL 11 NA 3(NA 1+) FORMUL 14 HOH *190(H2 O) HELIX 1 AA1 VAL A 29 GLY A 42 1 14 HELIX 2 AA2 THR A 119 ASP A 123 5 5 HELIX 3 AA3 GLY A 135 PHE A 145 1 11 SHEET 1 AA1 8 PHE A 53 ILE A 57 0 SHEET 2 AA1 8 MET A 61 ALA A 64 -1 O GLN A 63 N ARG A 55 SHEET 3 AA1 8 PHE A 112 CYS A 115 -1 O PHE A 112 N ALA A 64 SHEET 4 AA1 8 VAL A 97 MET A 100 -1 N VAL A 97 O CYS A 115 SHEET 5 AA1 8 VAL A 128 GLU A 134 -1 O PHE A 129 N LEU A 98 SHEET 6 AA1 8 LYS A 15 LEU A 24 -1 N VAL A 21 O ILE A 133 SHEET 7 AA1 8 LEU A 5 ALA A 12 -1 N VAL A 10 O LEU A 17 SHEET 8 AA1 8 ILE A 156 GLN A 163 -1 O ASP A 160 N ASP A 9 LINK OG ASER A 81 NA NA A 212 1555 5454 3.03 LINK NA NA A 210 O HOH A 440 1555 1555 2.89 LINK NA NA A 212 O HOH A 315 1555 5444 2.79 LINK NA NA A 212 O HOH A 351 1555 5444 2.94 LINK NA NA A 212 O HOH A 409 1555 5444 2.91 SITE 1 AC1 16 ARG A 55 MET A 61 GLN A 63 GLY A 72 SITE 2 AC1 16 THR A 73 ALA A 101 ASN A 102 THR A 107 SITE 3 AC1 16 GLY A 109 GLN A 111 PHE A 113 HIS A 126 SITE 4 AC1 16 LYS A 148 SER A 149 HOH A 367 HOH A 413 SITE 1 AC2 3 ASN A 13 LYS A 15 LYS A 154 SITE 1 AC3 6 GLN A 163 SER A 165 HOH A 302 HOH A 418 SITE 2 AC3 6 HOH A 431 HOH A 462 SITE 1 AC4 1 GLN A 163 SITE 1 AC5 5 ARG A 19 GLU A 134 LEU A 164 HOH A 364 SITE 2 AC5 5 HOH A 381 SITE 1 AC6 8 LYS A 31 GLU A 134 GLY A 135 ASP A 137 SITE 2 AC6 8 HOH A 305 HOH A 372 HOH A 422 HOH A 433 SITE 1 AC7 7 ILE A 78 VAL A 93 PRO A 95 HIS A 131 SITE 2 AC7 7 HOH A 327 HOH A 415 HOH A 421 SITE 1 AC8 3 GLY A 50 THR A 52 LYS A 155 SITE 1 AC9 5 SER A 147 LYS A 148 HOH A 304 HOH A 316 SITE 2 AC9 5 HOH A 328 SITE 1 AD1 1 HOH A 440 SITE 1 AD2 5 GLY A 80 SER A 81 HOH A 315 HOH A 351 SITE 2 AD2 5 HOH A 409 CRYST1 57.450 57.450 114.910 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008702 0.00000 CONECT 1264 1277 1286 CONECT 1265 1277 1282 1287 CONECT 1266 1278 1279 CONECT 1267 1279 1280 CONECT 1268 1269 1287 CONECT 1269 1268 1282 CONECT 1270 1274 1283 CONECT 1271 1272 1283 1284 CONECT 1272 1271 1273 CONECT 1273 1272 1274 CONECT 1274 1270 1273 1275 CONECT 1275 1274 1285 CONECT 1276 1285 1286 1289 CONECT 1277 1264 1265 1288 CONECT 1278 1266 1281 1287 CONECT 1279 1266 1267 CONECT 1280 1267 1281 CONECT 1281 1278 1280 1290 CONECT 1282 1265 1269 CONECT 1283 1270 1271 CONECT 1284 1271 CONECT 1285 1275 1276 CONECT 1286 1264 1276 CONECT 1287 1265 1268 1278 CONECT 1288 1277 CONECT 1289 1276 CONECT 1290 1281 CONECT 1291 1292 1293 CONECT 1292 1291 CONECT 1293 1291 1294 CONECT 1294 1293 CONECT 1295 1296 1297 CONECT 1296 1295 CONECT 1297 1295 1298 CONECT 1298 1297 CONECT 1299 1300 1301 CONECT 1300 1299 CONECT 1301 1299 1302 CONECT 1302 1301 CONECT 1303 1304 1305 CONECT 1304 1303 CONECT 1305 1303 1306 CONECT 1306 1305 CONECT 1307 1308 1309 CONECT 1308 1307 CONECT 1309 1307 1310 CONECT 1310 1309 CONECT 1311 1312 CONECT 1312 1311 1313 CONECT 1313 1312 1314 CONECT 1314 1313 1316 CONECT 1315 1316 1317 CONECT 1316 1314 1315 CONECT 1317 1315 1319 CONECT 1318 1319 1320 CONECT 1319 1317 1318 CONECT 1320 1318 1322 CONECT 1321 1322 1323 CONECT 1322 1320 1321 CONECT 1323 1321 1325 CONECT 1324 1325 1326 CONECT 1325 1323 1324 CONECT 1326 1324 CONECT 1327 1328 1329 CONECT 1328 1327 CONECT 1329 1327 1330 CONECT 1330 1329 1331 CONECT 1331 1330 1332 CONECT 1332 1331 1336 CONECT 1333 1334 CONECT 1334 1333 1335 CONECT 1335 1334 1336 CONECT 1336 1332 1335 CONECT 1337 1338 1339 1340 1341 CONECT 1338 1337 CONECT 1339 1337 CONECT 1340 1337 CONECT 1341 1337 CONECT 1342 1484 CONECT 1484 1342 MASTER 342 0 12 3 8 0 20 6 1511 1 80 13 END