HEADER ANTIMICROBIAL PROTEIN 09-OCT-24 9H11 TITLE CRYSTAL STRUCTURE OF OXA-48 APOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48, BLA_4, BLAOXA-48, AI2879V1_5232, GJJ21_26815, SOURCE 5 KPE71T_00045, SAMEA3727706_05517; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ANTIBIOTIC RESISTANCE, BETA LACTAMASE, CLASS D, APO, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.F.HOFF,K.E.GOUDAR,P.HINCHLIFFE,J.SPENCER REVDAT 3 26-NOV-25 9H11 1 JRNL REVDAT 2 24-SEP-25 9H11 1 JRNL REVDAT 1 03-SEP-25 9H11 0 JRNL AUTH J.F.HOFF,K.E.GOUDAR,K.CALVOPINA,M.BEER,P.HINCHLIFFE, JRNL AUTH 2 J.M.SHAW,C.L.TOOKE,Y.TAKEBAYASHI,A.F.CADZOW,N.J.HARMER, JRNL AUTH 3 A.J.MULHOLLAND,C.J.SCHOFIELD,J.SPENCER JRNL TITL ELECTROSTATIC INTERACTIONS INFLUENCE DIAZABICYCLOOCTANE JRNL TITL 2 INHIBITOR POTENCY AGAINST OXA-48-LIKE BETA-LACTAMASES. JRNL REF RSC MED CHEM V. 16 5441 2025 JRNL REFN ESSN 2632-8682 JRNL PMID 40927637 JRNL DOI 10.1039/D5MD00512D REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 148214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 7303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.7600 - 4.2900 1.00 5142 246 0.1490 0.1585 REMARK 3 2 4.2900 - 3.4000 1.00 4874 244 0.1325 0.1679 REMARK 3 3 3.4000 - 2.9700 1.00 4806 255 0.1508 0.1507 REMARK 3 4 2.9700 - 2.7000 1.00 4739 275 0.1560 0.1684 REMARK 3 5 2.7000 - 2.5100 1.00 4720 282 0.1628 0.1793 REMARK 3 6 2.5100 - 2.3600 1.00 4755 236 0.1593 0.1622 REMARK 3 7 2.3600 - 2.2400 1.00 4714 253 0.1552 0.1975 REMARK 3 8 2.2400 - 2.1400 1.00 4725 223 0.1463 0.1601 REMARK 3 9 2.1400 - 2.0600 1.00 4701 231 0.1472 0.1836 REMARK 3 10 2.0600 - 1.9900 1.00 4691 249 0.1505 0.1608 REMARK 3 11 1.9900 - 1.9300 1.00 4700 238 0.1561 0.1636 REMARK 3 12 1.9300 - 1.8700 1.00 4686 242 0.1718 0.1822 REMARK 3 13 1.8700 - 1.8200 1.00 4672 239 0.1776 0.1863 REMARK 3 14 1.8200 - 1.7800 1.00 4679 232 0.1765 0.1929 REMARK 3 15 1.7800 - 1.7400 1.00 4662 229 0.1825 0.1988 REMARK 3 16 1.7400 - 1.7000 1.00 4702 243 0.1880 0.2256 REMARK 3 17 1.7000 - 1.6700 1.00 4631 236 0.1904 0.2016 REMARK 3 18 1.6700 - 1.6400 1.00 4708 220 0.1994 0.2380 REMARK 3 19 1.6400 - 1.6100 1.00 4647 234 0.2030 0.2094 REMARK 3 20 1.6100 - 1.5800 1.00 4636 252 0.2141 0.2536 REMARK 3 21 1.5800 - 1.5500 1.00 4631 256 0.2204 0.2189 REMARK 3 22 1.5500 - 1.5300 1.00 4626 265 0.2384 0.2608 REMARK 3 23 1.5300 - 1.5100 1.00 4624 238 0.2435 0.2690 REMARK 3 24 1.5100 - 1.4900 1.00 4646 239 0.2614 0.2628 REMARK 3 25 1.4900 - 1.4700 1.00 4645 245 0.2694 0.2854 REMARK 3 26 1.4700 - 1.4500 1.00 4654 225 0.2750 0.3213 REMARK 3 27 1.4500 - 1.4300 1.00 4624 252 0.2927 0.2880 REMARK 3 28 1.4300 - 1.4100 1.00 4617 227 0.2996 0.2912 REMARK 3 29 1.4100 - 1.4000 1.00 4659 235 0.3029 0.3070 REMARK 3 30 1.4000 - 1.3800 1.00 4595 262 0.3142 0.3312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4231 REMARK 3 ANGLE : 0.782 5742 REMARK 3 CHIRALITY : 0.077 598 REMARK 3 PLANARITY : 0.007 744 REMARK 3 DIHEDRAL : 12.606 1566 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3945 -40.9013 3.1024 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.1799 REMARK 3 T33: 0.2353 T12: -0.0567 REMARK 3 T13: -0.0155 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.9090 L22: 2.1270 REMARK 3 L33: 5.8828 L12: -0.1006 REMARK 3 L13: -1.6554 L23: 2.1192 REMARK 3 S TENSOR REMARK 3 S11: 0.1871 S12: -0.1735 S13: 0.3269 REMARK 3 S21: -0.1014 S22: 0.0203 S23: -0.1442 REMARK 3 S31: -0.5799 S32: 0.3427 S33: -0.2520 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0120 -53.5253 4.8472 REMARK 3 T TENSOR REMARK 3 T11: 0.0773 T22: 0.1290 REMARK 3 T33: 0.1057 T12: -0.0121 REMARK 3 T13: -0.0070 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.2453 L22: 0.8022 REMARK 3 L33: 0.7678 L12: 0.4006 REMARK 3 L13: -0.3471 L23: -0.5228 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.0366 S13: 0.0775 REMARK 3 S21: 0.0466 S22: -0.0486 S23: -0.0403 REMARK 3 S31: -0.0622 S32: 0.0642 S33: 0.0212 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6463 -59.3820 17.5861 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.1928 REMARK 3 T33: 0.1165 T12: -0.0087 REMARK 3 T13: 0.0065 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.9705 L22: 3.0308 REMARK 3 L33: 2.9460 L12: -0.2167 REMARK 3 L13: -0.4985 L23: 1.1492 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: -0.2782 S13: -0.0129 REMARK 3 S21: 0.2447 S22: -0.0362 S23: 0.0410 REMARK 3 S31: 0.0410 S32: -0.1880 S33: 0.0093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8164 -70.2088 12.7795 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.1246 REMARK 3 T33: 0.1057 T12: -0.0355 REMARK 3 T13: -0.0442 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.6563 L22: 2.8141 REMARK 3 L33: 5.4430 L12: -1.7338 REMARK 3 L13: -3.6496 L23: 1.6678 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: -0.0524 S13: -0.2051 REMARK 3 S21: 0.1640 S22: -0.0172 S23: 0.0228 REMARK 3 S31: 0.4337 S32: -0.0608 S33: 0.1248 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9309 -63.0245 5.3627 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.1021 REMARK 3 T33: 0.0909 T12: -0.0044 REMARK 3 T13: 0.0017 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.1805 L22: 0.5821 REMARK 3 L33: 1.6902 L12: -0.1307 REMARK 3 L13: 0.7042 L23: -0.3051 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: 0.0467 S13: -0.0526 REMARK 3 S21: -0.0015 S22: -0.0600 S23: -0.0359 REMARK 3 S31: 0.0822 S32: 0.1369 S33: 0.0092 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6889 -49.7132 10.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.1240 REMARK 3 T33: 0.1120 T12: -0.0287 REMARK 3 T13: -0.0111 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.3468 L22: 1.4044 REMARK 3 L33: 2.0314 L12: -0.7386 REMARK 3 L13: 1.4500 L23: -1.0447 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: -0.0849 S13: 0.1576 REMARK 3 S21: 0.2041 S22: -0.0833 S23: -0.0979 REMARK 3 S31: -0.2388 S32: 0.1249 S33: 0.1597 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8207 -44.2695 6.0652 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1151 REMARK 3 T33: 0.1416 T12: -0.0234 REMARK 3 T13: -0.0019 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.0023 L22: 0.8329 REMARK 3 L33: 4.0692 L12: 0.0492 REMARK 3 L13: 1.3168 L23: -0.1567 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0236 S13: 0.2243 REMARK 3 S21: 0.0683 S22: -0.0438 S23: -0.0147 REMARK 3 S31: -0.2416 S32: 0.0455 S33: 0.0635 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6987 -38.8004 5.7741 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.2336 REMARK 3 T33: 0.2581 T12: 0.0695 REMARK 3 T13: 0.0131 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 1.7433 L22: 3.8273 REMARK 3 L33: 3.1285 L12: 1.7993 REMARK 3 L13: -1.7493 L23: -2.6784 REMARK 3 S TENSOR REMARK 3 S11: 0.2179 S12: -0.2205 S13: 0.4695 REMARK 3 S21: 0.3569 S22: 0.0331 S23: 0.4227 REMARK 3 S31: -0.4889 S32: -0.1437 S33: -0.2666 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4286 -44.7167 4.2998 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: 0.1810 REMARK 3 T33: 0.1416 T12: 0.0198 REMARK 3 T13: -0.0035 T23: -0.0713 REMARK 3 L TENSOR REMARK 3 L11: 2.8681 L22: 6.9264 REMARK 3 L33: 3.7216 L12: -1.0113 REMARK 3 L13: -0.1652 L23: -2.9380 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.1304 S13: 0.0612 REMARK 3 S21: 0.1238 S22: -0.0644 S23: 0.1519 REMARK 3 S31: -0.2258 S32: -0.1947 S33: 0.0415 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1314 -47.3350 -15.6757 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.1250 REMARK 3 T33: 0.0959 T12: 0.0153 REMARK 3 T13: -0.0056 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.7114 L22: 0.9701 REMARK 3 L33: 0.7725 L12: -0.2635 REMARK 3 L13: -0.2050 L23: 0.1964 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: 0.0631 S13: 0.1463 REMARK 3 S21: -0.1151 S22: -0.0228 S23: -0.0712 REMARK 3 S31: -0.1097 S32: 0.0177 S33: -0.0219 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1596 -55.2392 -20.3841 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.1669 REMARK 3 T33: 0.1082 T12: 0.0331 REMARK 3 T13: -0.0154 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.4767 L22: 1.7205 REMARK 3 L33: 1.4099 L12: 1.0953 REMARK 3 L13: -0.6708 L23: -0.4435 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.2172 S13: -0.0368 REMARK 3 S21: -0.0772 S22: -0.0164 S23: 0.0613 REMARK 3 S31: 0.0235 S32: -0.1297 S33: -0.0011 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9575 -55.2176 -7.8941 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.1248 REMARK 3 T33: 0.0998 T12: -0.0022 REMARK 3 T13: -0.0014 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.1099 L22: 1.0536 REMARK 3 L33: 1.1128 L12: -0.9836 REMARK 3 L13: 0.8736 L23: -0.4952 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: -0.0297 S13: -0.0322 REMARK 3 S21: -0.0287 S22: -0.0137 S23: 0.0720 REMARK 3 S31: 0.0241 S32: -0.0825 S33: -0.0332 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0238 -41.0606 -1.2887 REMARK 3 T TENSOR REMARK 3 T11: 0.1033 T22: 0.1261 REMARK 3 T33: 0.1695 T12: 0.0110 REMARK 3 T13: -0.0025 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.8462 L22: 1.0527 REMARK 3 L33: 1.8743 L12: -0.5047 REMARK 3 L13: 0.6023 L23: -0.2255 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.0742 S13: 0.2555 REMARK 3 S21: 0.0109 S22: 0.0065 S23: 0.0136 REMARK 3 S31: -0.1948 S32: -0.0697 S33: 0.0282 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9H11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1292142164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 148214 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 61.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 40.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 41.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 33% V/V PEG 400, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.70933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.85467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.78200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.92733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 134.63667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.70933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.85467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.92733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.78200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 134.63667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 664 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 668 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 591 O HOH A 723 2.03 REMARK 500 O HOH B 535 O HOH B 566 2.08 REMARK 500 O HOH A 701 O HOH B 684 2.10 REMARK 500 O HOH A 473 O HOH A 636 2.11 REMARK 500 O HOH B 731 O HOH B 733 2.17 REMARK 500 O HOH B 630 O HOH B 728 2.17 REMARK 500 O HOH B 594 O HOH B 683 2.18 REMARK 500 O HOH A 413 O HOH A 636 2.18 REMARK 500 O HOH B 680 O HOH B 733 2.18 REMARK 500 O HOH B 523 O HOH B 710 2.19 REMARK 500 O HOH A 579 O HOH A 667 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -137.02 47.45 REMARK 500 ASN A 106 52.70 -91.86 REMARK 500 ASP A 159 18.09 -151.21 REMARK 500 HIS A 182 43.29 -84.80 REMARK 500 ALA B 69 -137.85 48.43 REMARK 500 ASN B 106 56.35 -92.57 REMARK 500 ASP B 159 20.43 -147.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 9H11 A 23 265 UNP Q6XEC0 Q6XEC0_KLEPN 23 265 DBREF 9H11 B 23 265 UNP Q6XEC0 Q6XEC0_KLEPN 23 265 SEQADV 9H11 GLY A 21 UNP Q6XEC0 EXPRESSION TAG SEQADV 9H11 PRO A 22 UNP Q6XEC0 EXPRESSION TAG SEQADV 9H11 GLY B 21 UNP Q6XEC0 EXPRESSION TAG SEQADV 9H11 PRO B 22 UNP Q6XEC0 EXPRESSION TAG SEQRES 1 A 245 GLY PRO LYS GLU TRP GLN GLU ASN LYS SER TRP ASN ALA SEQRES 2 A 245 HIS PHE THR GLU HIS LYS SER GLN GLY VAL VAL VAL LEU SEQRES 3 A 245 TRP ASN GLU ASN LYS GLN GLN GLY PHE THR ASN ASN LEU SEQRES 4 A 245 LYS ARG ALA ASN GLN ALA PHE LEU PRO ALA SER THR PHE SEQRES 5 A 245 KCX ILE PRO ASN SER LEU ILE ALA LEU ASP LEU GLY VAL SEQRES 6 A 245 VAL LYS ASP GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN SEQRES 7 A 245 THR ARG ASP ILE ALA THR TRP ASN ARG ASP HIS ASN LEU SEQRES 8 A 245 ILE THR ALA MET LYS TYR SER VAL VAL PRO VAL TYR GLN SEQRES 9 A 245 GLU PHE ALA ARG GLN ILE GLY GLU ALA ARG MET SER LYS SEQRES 10 A 245 MET LEU HIS ALA PHE ASP TYR GLY ASN GLU ASP ILE SER SEQRES 11 A 245 GLY ASN VAL ASP SER PHE TRP LEU ASP GLY GLY ILE ARG SEQRES 12 A 245 ILE SER ALA THR GLU GLN ILE SER PHE LEU ARG LYS LEU SEQRES 13 A 245 TYR HIS ASN LYS LEU HIS VAL SER GLU ARG SER GLN ARG SEQRES 14 A 245 ILE VAL LYS GLN ALA MET LEU THR GLU ALA ASN GLY ASP SEQRES 15 A 245 TYR ILE ILE ARG ALA LYS THR GLY TYR SER THR ARG ILE SEQRES 16 A 245 GLU PRO LYS ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU SEQRES 17 A 245 ASP ASP ASN VAL TRP PHE PHE ALA MET ASN MET ASP MET SEQRES 18 A 245 PRO THR SER ASP GLY LEU GLY LEU ARG GLN ALA ILE THR SEQRES 19 A 245 LYS GLU VAL LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 B 245 GLY PRO LYS GLU TRP GLN GLU ASN LYS SER TRP ASN ALA SEQRES 2 B 245 HIS PHE THR GLU HIS LYS SER GLN GLY VAL VAL VAL LEU SEQRES 3 B 245 TRP ASN GLU ASN LYS GLN GLN GLY PHE THR ASN ASN LEU SEQRES 4 B 245 LYS ARG ALA ASN GLN ALA PHE LEU PRO ALA SER THR PHE SEQRES 5 B 245 KCX ILE PRO ASN SER LEU ILE ALA LEU ASP LEU GLY VAL SEQRES 6 B 245 VAL LYS ASP GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN SEQRES 7 B 245 THR ARG ASP ILE ALA THR TRP ASN ARG ASP HIS ASN LEU SEQRES 8 B 245 ILE THR ALA MET LYS TYR SER VAL VAL PRO VAL TYR GLN SEQRES 9 B 245 GLU PHE ALA ARG GLN ILE GLY GLU ALA ARG MET SER LYS SEQRES 10 B 245 MET LEU HIS ALA PHE ASP TYR GLY ASN GLU ASP ILE SER SEQRES 11 B 245 GLY ASN VAL ASP SER PHE TRP LEU ASP GLY GLY ILE ARG SEQRES 12 B 245 ILE SER ALA THR GLU GLN ILE SER PHE LEU ARG LYS LEU SEQRES 13 B 245 TYR HIS ASN LYS LEU HIS VAL SER GLU ARG SER GLN ARG SEQRES 14 B 245 ILE VAL LYS GLN ALA MET LEU THR GLU ALA ASN GLY ASP SEQRES 15 B 245 TYR ILE ILE ARG ALA LYS THR GLY TYR SER THR ARG ILE SEQRES 16 B 245 GLU PRO LYS ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU SEQRES 17 B 245 ASP ASP ASN VAL TRP PHE PHE ALA MET ASN MET ASP MET SEQRES 18 B 245 PRO THR SER ASP GLY LEU GLY LEU ARG GLN ALA ILE THR SEQRES 19 B 245 LYS GLU VAL LEU LYS GLN GLU LYS ILE ILE PRO MODRES 9H11 KCX A 73 LYS MODIFIED RESIDUE MODRES 9H11 KCX B 73 LYS MODIFIED RESIDUE HET KCX A 73 12 HET KCX B 73 12 HET CL A 301 1 HET GOL A 302 6 HET GOL B 301 6 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 CL CL 1- FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *675(H2 O) HELIX 1 AA1 TRP A 31 HIS A 38 1 8 HELIX 2 AA2 ASN A 58 ASN A 63 1 6 HELIX 3 AA3 PRO A 68 THR A 71 5 4 HELIX 4 AA4 PHE A 72 LEU A 83 1 12 HELIX 5 AA5 ILE A 102 ASN A 106 5 5 HELIX 6 AA6 ASN A 110 TYR A 117 1 8 HELIX 7 AA7 VAL A 119 GLY A 131 1 13 HELIX 8 AA8 GLY A 131 PHE A 142 1 12 HELIX 9 AA9 SER A 155 GLY A 160 1 6 HELIX 10 AB1 ALA A 166 HIS A 178 1 13 HELIX 11 AB2 SER A 184 MET A 195 1 12 HELIX 12 AB3 THR A 243 LEU A 247 5 5 HELIX 13 AB4 GLY A 248 GLU A 261 1 14 HELIX 14 AB5 TRP B 31 HIS B 38 1 8 HELIX 15 AB6 ASN B 58 ASN B 63 1 6 HELIX 16 AB7 PRO B 68 THR B 71 5 4 HELIX 17 AB8 PHE B 72 LEU B 83 1 12 HELIX 18 AB9 ILE B 102 ASN B 106 5 5 HELIX 19 AC1 ASN B 110 TYR B 117 1 8 HELIX 20 AC2 VAL B 119 GLY B 131 1 13 HELIX 21 AC3 GLY B 131 PHE B 142 1 12 HELIX 22 AC4 SER B 155 GLY B 160 1 6 HELIX 23 AC5 SER B 165 HIS B 178 1 14 HELIX 24 AC6 SER B 184 MET B 195 1 12 HELIX 25 AC7 THR B 243 LEU B 247 5 5 HELIX 26 AC8 GLY B 248 GLU B 261 1 14 SHEET 1 AA1 7 TRP A 25 GLU A 27 0 SHEET 2 AA1 7 GLN A 53 THR A 56 1 O GLY A 54 N GLN A 26 SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N ASN A 48 O GLN A 53 SHEET 4 AA1 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 AA1 7 ILE A 219 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N ILE A 204 O GLU A 227 SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA2 2 ALA A 65 PHE A 66 0 SHEET 2 AA2 2 ILE A 164 SER A 165 -1 O ILE A 164 N PHE A 66 SHEET 1 AA3 7 TRP B 25 GLU B 27 0 SHEET 2 AA3 7 GLN B 53 THR B 56 1 O GLY B 54 N GLN B 26 SHEET 3 AA3 7 GLY B 42 ASN B 48 -1 N LEU B 46 O PHE B 55 SHEET 4 AA3 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 AA3 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 AA3 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 AA3 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 LINK C PHE A 72 N KCX A 73 1555 1555 1.33 LINK C KCX A 73 N ILE A 74 1555 1555 1.34 LINK C PHE B 72 N KCX B 73 1555 1555 1.33 LINK C KCX B 73 N ILE B 74 1555 1555 1.34 CISPEP 1 GLU A 216 PRO A 217 0 -1.98 CISPEP 2 GLU B 216 PRO B 217 0 -0.94 CRYST1 123.513 123.513 161.564 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008096 0.004674 0.000000 0.00000 SCALE2 0.000000 0.009349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006189 0.00000 CONECT 434 443 CONECT 443 434 444 CONECT 444 443 445 450 CONECT 445 444 446 CONECT 446 445 447 CONECT 447 446 448 CONECT 448 447 449 CONECT 449 448 452 CONECT 450 444 451 455 CONECT 451 450 CONECT 452 449 453 454 CONECT 453 452 CONECT 454 452 CONECT 455 450 CONECT 2479 2488 CONECT 2488 2479 2489 CONECT 2489 2488 2490 2495 CONECT 2490 2489 2491 CONECT 2491 2490 2492 CONECT 2492 2491 2493 CONECT 2493 2492 2494 CONECT 2494 2493 2497 CONECT 2495 2489 2496 2500 CONECT 2496 2495 CONECT 2497 2494 2498 2499 CONECT 2498 2497 CONECT 2499 2497 CONECT 2500 2495 CONECT 4108 4109 4110 CONECT 4109 4108 CONECT 4110 4108 4111 4112 CONECT 4111 4110 CONECT 4112 4110 4113 CONECT 4113 4112 CONECT 4114 4115 4116 CONECT 4115 4114 CONECT 4116 4114 4117 4118 CONECT 4117 4116 CONECT 4118 4116 4119 CONECT 4119 4118 MASTER 502 0 5 26 16 0 0 6 4694 2 40 38 END