HEADER DNA BINDING PROTEIN 25-OCT-24 9H6T TITLE PARTIAL CAS1-CAS2 CRISPR INTEGRASE COMPLEX BOUND TO A HALF-INTEGRATION TITLE 2 PRODUCT, STREPTOCOCCUS THERMOPHILUS DGCC 7710 CRISPR3 SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED ENDORIBONUCLEASE CAS2; COMPND 3 CHAIN: A, D; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS1; COMPND 8 CHAIN: B, C; COMPND 9 EC: 3.1.-.-; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FRAGMENT OF LEADER DNA ADJACENT TO THE INTEGRATION SITE; COMPND 13 CHAIN: E; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: INTEGRATION TARGET DNA, THE INTACT STRAND; COMPND 17 CHAIN: F; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: TACGAGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCTCGTA; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: INTEGRATION PRODUCT; COMPND 22 CHAIN: G; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 6; COMPND 25 MOLECULE: DNA PRESPACER, THE NON-INTEGRATED STRAND; COMPND 26 CHAIN: H; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS DGCC 7710; SOURCE 3 ORGANISM_TAXID: 1268061; SOURCE 4 GENE: CAS2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS DGCC 7710; SOURCE 9 ORGANISM_TAXID: 1268061; SOURCE 10 GENE: CAS1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630; SOURCE 21 MOL_ID: 5; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 24 ORGANISM_TAXID: 32630; SOURCE 25 MOL_ID: 6; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630 KEYWDS CIRSPR-CAS, SPACER ACQUISITION, CAS1, CAS2, CRISPR INTEGRASE, DNA KEYWDS 2 BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR G.SASNAUSKAS,U.GAIZAUSKAITE,G.TAMULAITIENE REVDAT 1 18-FEB-26 9H6T 0 JRNL AUTH G.SASNAUSKAS,U.GAIZAUSKAITE,G.TAMULAITIENE JRNL TITL STRUCTURAL BASIS FOR CAS9-MEDIATED PRESPACER SELECTION IN JRNL TITL 2 CRISPR-CAS ADAPTATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 9H1V REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.930 REMARK 3 NUMBER OF PARTICLES : 108374 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9H6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1292142752. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PARTIAL CAS1-CAS2 CRISPR REMARK 245 INTEGRASE COMPLEX BOUND TO A REMARK 245 HALF-INTEGRATION PRODUCT, REMARK 245 STREPTOCOCCUS THERMOPHILUS DGCC REMARK 245 7710 CRISPR3 SYSTEM REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : 92000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 3 REMARK 465 ARG A 4 REMARK 465 CYS A 111 REMARK 465 ASP A 112 REMARK 465 GLU A 113 REMARK 465 ASP A 114 REMARK 465 MET B 1 REMARK 465 LYS B 204 REMARK 465 HIS B 205 REMARK 465 ALA B 206 REMARK 465 ASN B 207 REMARK 465 GLN B 208 REMARK 465 PHE B 209 REMARK 465 ASN B 210 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 TYR D 3 REMARK 465 ARG D 4 REMARK 465 TYR D 5 REMARK 465 GLU D 101 REMARK 465 ARG D 102 REMARK 465 LEU D 103 REMARK 465 VAL D 104 REMARK 465 PHE D 105 REMARK 465 LEU D 106 REMARK 465 GLY D 107 REMARK 465 ASP D 108 REMARK 465 ASN D 109 REMARK 465 TYR D 110 REMARK 465 CYS D 111 REMARK 465 ASP D 112 REMARK 465 GLU D 113 REMARK 465 ASP D 114 REMARK 465 DT F -42 REMARK 465 DA F -41 REMARK 465 DC F -40 REMARK 465 DG F -39 REMARK 465 DA F -38 REMARK 465 DG F -37 REMARK 465 DG F -36 REMARK 465 DT F -35 REMARK 465 DT F -34 REMARK 465 DT F -33 REMARK 465 DT F -32 REMARK 465 DA F -31 REMARK 465 DG F -30 REMARK 465 DA F -29 REMARK 465 DG F -28 REMARK 465 DC F -27 REMARK 465 DT F -26 REMARK 465 DG F -25 REMARK 465 DT F -24 REMARK 465 DG F -23 REMARK 465 DT F -22 REMARK 465 DT F -21 REMARK 465 DA G -32 REMARK 465 DC G -31 REMARK 465 DA G -30 REMARK 465 DA G -29 REMARK 465 DC G -28 REMARK 465 DA G -27 REMARK 465 DG G -26 REMARK 465 DC G -25 REMARK 465 DA G 21 REMARK 465 DA G 22 REMARK 465 DC G 23 REMARK 465 DA G 24 REMARK 465 DC G 25 REMARK 465 DA G 26 REMARK 465 DG G 27 REMARK 465 DC G 28 REMARK 465 DT G 29 REMARK 465 DC G 30 REMARK 465 DT G 31 REMARK 465 DA G 32 REMARK 465 DA G 33 REMARK 465 DA G 34 REMARK 465 DA G 35 REMARK 465 DC G 36 REMARK 465 DC G 37 REMARK 465 DT G 38 REMARK 465 DC G 39 REMARK 465 DG G 40 REMARK 465 DT G 41 REMARK 465 DA G 42 REMARK 465 DA H -3 REMARK 465 DC H -2 REMARK 465 DA H -1 REMARK 465 DA H 0 REMARK 465 DC H 1 REMARK 465 DA H 2 REMARK 465 DG H 3 REMARK 465 DG H 25 REMARK 465 DA H 26 REMARK 465 DA H 27 REMARK 465 DC H 28 REMARK 465 DC H 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 5 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 THR A 18 OG1 CG2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 ASN A 93 CG OD1 ND2 REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 SER B 36 OG REMARK 470 THR B 46 OG1 CG2 REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 ASP B 60 CG OD1 OD2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 ASP B 70 CG OD1 OD2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LEU B 73 CG CD1 CD2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 CYS B 103 SG REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 SER B 130 OG REMARK 470 SER B 132 OG REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 LEU B 140 CG CD1 CD2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 143 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 144 CG OD1 OD2 REMARK 470 SER B 146 OG REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 470 HIS B 151 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 163 CG OD1 ND2 REMARK 470 ASP B 164 CG OD1 OD2 REMARK 470 PHE B 165 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 166 OG1 CG2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 SER B 169 OG REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 ASP B 172 CG OD1 OD2 REMARK 470 ASP B 178 CG OD1 OD2 REMARK 470 TYR B 181 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET B 187 CG SD CE REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 MET B 198 CG SD CE REMARK 470 ILE B 201 CG1 CG2 CD1 REMARK 470 GLN B 211 CG CD OE1 NE2 REMARK 470 ASN B 213 CG OD1 ND2 REMARK 470 ASP B 217 CG OD1 OD2 REMARK 470 GLU B 220 CG CD OE1 OE2 REMARK 470 ARG B 223 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 227 CG OD1 OD2 REMARK 470 ARG B 228 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 232 CG CD OE1 NE2 REMARK 470 ASN B 233 CG OD1 ND2 REMARK 470 ARG B 234 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 235 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 236 CG OD1 ND2 REMARK 470 PHE B 238 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 470 SER B 247 OG REMARK 470 GLU B 251 CG CD OE1 OE2 REMARK 470 ASN B 256 CG OD1 ND2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 GLN B 279 CG CD OE1 NE2 REMARK 470 LEU B 280 CG CD1 CD2 REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 GLU B 283 CG CD OE1 OE2 REMARK 470 ARG B 288 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 5 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 12 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 14 CG CD CE NZ REMARK 470 ASN C 19 CG OD1 ND2 REMARK 470 ASN C 20 CG OD1 ND2 REMARK 470 LEU C 22 CG CD1 CD2 REMARK 470 ARG C 25 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 26 CG OD1 ND2 REMARK 470 SER C 27 OG REMARK 470 TYR C 28 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 GLU C 31 CG CD OE1 OE2 REMARK 470 MET C 32 CG SD CE REMARK 470 SER C 36 OG REMARK 470 ASP C 39 CG OD1 OD2 REMARK 470 LYS C 56 CG CD CE NZ REMARK 470 ASP C 69 CG OD1 OD2 REMARK 470 ASP C 70 CG OD1 OD2 REMARK 470 TYR C 82 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 86 CG OD1 OD2 REMARK 470 LEU C 89 CG CD1 CD2 REMARK 470 GLU C 99 CG CD OE1 OE2 REMARK 470 GLU C 104 CG CD OE1 OE2 REMARK 470 GLU C 123 CG CD OE1 OE2 REMARK 470 GLU C 128 CG CD OE1 OE2 REMARK 470 GLN C 131 CG CD OE1 NE2 REMARK 470 GLU C 135 CG CD OE1 OE2 REMARK 470 ASP C 164 CG OD1 OD2 REMARK 470 SER C 169 OG REMARK 470 HIS C 235 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 240 CG CD CE NZ REMARK 470 LYS C 243 CG CD CE NZ REMARK 470 SER C 247 OG REMARK 470 SER C 250 OG REMARK 470 GLU C 251 CG CD OE1 OE2 REMARK 470 LEU C 254 CG CD1 CD2 REMARK 470 LYS C 258 CG CD CE NZ REMARK 470 GLU C 259 CG CD OE1 OE2 REMARK 470 MET C 260 CG SD CE REMARK 470 ASP C 268 CG OD1 OD2 REMARK 470 LYS C 271 CG CD CE NZ REMARK 470 LYS C 272 CG CD CE NZ REMARK 470 GLN C 279 CG CD OE1 NE2 REMARK 470 LEU C 280 CG CD1 CD2 REMARK 470 GLU C 282 CG CD OE1 OE2 REMARK 470 GLU C 283 CG CD OE1 OE2 REMARK 470 GLU C 286 CG CD OE1 OE2 REMARK 470 ARG C 288 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 20 CG CD OE1 OE2 REMARK 470 GLU D 21 CG CD OE1 OE2 REMARK 470 LYS D 23 CG CD CE NZ REMARK 470 GLU D 35 CG CD OE1 OE2 REMARK 470 LEU D 50 CG CD1 CD2 REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 GLU D 79 CG CD OE1 OE2 REMARK 470 ASP D 91 CG OD1 OD2 REMARK 470 THR D 94 OG1 CG2 REMARK 470 SER D 99 OG REMARK 470 GLU D 100 CG CD OE1 OE2 REMARK 470 DC H 4 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 43 -0.22 72.93 REMARK 500 ASN A 65 31.21 -95.93 REMARK 500 ASP B 86 47.26 -92.95 REMARK 500 ASP B 144 72.67 52.68 REMARK 500 ASN C 10 39.31 -140.20 REMARK 500 HIS C 12 30.29 -93.37 REMARK 500 GLU C 141 -169.33 -126.46 REMARK 500 PHE C 143 -2.06 68.58 REMARK 500 ASP C 164 59.37 -90.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 12 O REMARK 620 2 SER A 43 OG 57.1 REMARK 620 3 DC G -13 OP1 65.0 77.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE D 12 O REMARK 620 2 SER D 43 OG 56.5 REMARK 620 3 DC H 16 OP1 60.5 72.1 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-51900 RELATED DB: EMDB REMARK 900 PARTIAL CAS1-CAS2 CRISPR INTEGRASE COMPLEX BOUND TO A HALF- REMARK 900 INTEGRATION PRODUCT, STREPTOCOCCUS THERMOPHILUS DGCC 7710 CRISPR3 REMARK 900 SYSTEM DBREF 9H6T A 1 114 UNP G3ECR3 CAS2_STRTR 1 114 DBREF 9H6T B 1 289 UNP G3ECR2 CAS1_STRTR 1 289 DBREF 9H6T C 1 289 UNP G3ECR2 CAS1_STRTR 1 289 DBREF 9H6T D 1 114 UNP G3ECR3 CAS2_STRTR 1 114 DBREF 9H6T E -5 0 PDB 9H6T 9H6T -5 0 DBREF 9H6T F -42 5 PDB 9H6T 9H6T -42 5 DBREF 9H6T G -32 42 PDB 9H6T 9H6T -32 42 DBREF 9H6T H -3 29 PDB 9H6T 9H6T -3 29 SEQRES 1 A 114 MET SER TYR ARG TYR MET ARG MET ILE LEU MET PHE ASP SEQRES 2 A 114 MET PRO THR ASP THR ALA GLU GLU ARG LYS ALA TYR ARG SEQRES 3 A 114 LYS PHE ARG LYS PHE LEU LEU SER GLU GLY PHE ILE MET SEQRES 4 A 114 HIS GLN PHE SER VAL TYR SER LYS LEU LEU LEU ASN HIS SEQRES 5 A 114 THR ALA ASN THR ALA MET VAL GLY ARG LEU LYS ALA ASN SEQRES 6 A 114 ASN PRO LYS LYS GLY ASN ILE THR ILE LEU THR VAL THR SEQRES 7 A 114 GLU LYS GLN PHE ALA ARG MET ILE TYR LEU TYR GLY ASP SEQRES 8 A 114 LYS ASN THR SER ILE ALA ASN SER GLU GLU ARG LEU VAL SEQRES 9 A 114 PHE LEU GLY ASP ASN TYR CYS ASP GLU ASP SEQRES 1 B 289 MET ALA GLY TRP ARG THR VAL VAL VAL ASN ILE HIS SER SEQRES 2 B 289 LYS LEU SER TYR LYS ASN ASN HIS LEU ILE PHE ARG ASN SEQRES 3 B 289 SER TYR LYS THR GLU MET ILE HIS LEU SER GLU ILE ASP SEQRES 4 B 289 ILE LEU LEU LEU GLU THR THR ASP ILE VAL LEU THR THR SEQRES 5 B 289 MET LEU VAL LYS ARG LEU VAL ASP GLU ASN ILE LEU VAL SEQRES 6 B 289 ILE PHE CYS ASP ASP LYS ARG LEU PRO THR ALA PHE LEU SEQRES 7 B 289 THR PRO TYR TYR ALA ARG HIS ASP SER SER LEU GLN ILE SEQRES 8 B 289 ALA ARG GLN ILE ALA TRP LYS GLU ASN VAL LYS CYS GLU SEQRES 9 B 289 VAL TRP THR ALA ILE ILE ALA GLN LYS ILE LEU ASN GLN SEQRES 10 B 289 SER TYR TYR LEU GLY GLU CYS SER PHE PHE GLU LYS SER SEQRES 11 B 289 GLN SER ILE MET GLU LEU TYR HIS GLY LEU GLU ARG PHE SEQRES 12 B 289 ASP PRO SER ASN ARG GLU GLY HIS SER ALA ARG ILE TYR SEQRES 13 B 289 PHE ASN THR LEU PHE GLY ASN ASP PHE THR ARG GLU SER SEQRES 14 B 289 ASP ASN ASP ILE ASN ALA ALA LEU ASP TYR GLY TYR THR SEQRES 15 B 289 LEU LEU LEU SER MET PHE ALA ARG GLU VAL VAL VAL CYS SEQRES 16 B 289 GLY CYS MET THR GLN ILE GLY LEU LYS HIS ALA ASN GLN SEQRES 17 B 289 PHE ASN GLN PHE ASN LEU ALA SER ASP ILE MET GLU PRO SEQRES 18 B 289 PHE ARG PRO ILE ILE ASP ARG ILE VAL TYR GLN ASN ARG SEQRES 19 B 289 HIS ASN ASN PHE VAL LYS ILE LYS LYS GLU LEU PHE SER SEQRES 20 B 289 ILE PHE SER GLU THR TYR LEU TYR ASN GLY LYS GLU MET SEQRES 21 B 289 TYR LEU SER ASN ILE VAL SER ASP TYR THR LYS LYS VAL SEQRES 22 B 289 ILE LYS ALA LEU ASN GLN LEU GLY GLU GLU ILE PRO GLU SEQRES 23 B 289 PHE ARG ILE SEQRES 1 C 289 MET ALA GLY TRP ARG THR VAL VAL VAL ASN ILE HIS SER SEQRES 2 C 289 LYS LEU SER TYR LYS ASN ASN HIS LEU ILE PHE ARG ASN SEQRES 3 C 289 SER TYR LYS THR GLU MET ILE HIS LEU SER GLU ILE ASP SEQRES 4 C 289 ILE LEU LEU LEU GLU THR THR ASP ILE VAL LEU THR THR SEQRES 5 C 289 MET LEU VAL LYS ARG LEU VAL ASP GLU ASN ILE LEU VAL SEQRES 6 C 289 ILE PHE CYS ASP ASP LYS ARG LEU PRO THR ALA PHE LEU SEQRES 7 C 289 THR PRO TYR TYR ALA ARG HIS ASP SER SER LEU GLN ILE SEQRES 8 C 289 ALA ARG GLN ILE ALA TRP LYS GLU ASN VAL LYS CYS GLU SEQRES 9 C 289 VAL TRP THR ALA ILE ILE ALA GLN LYS ILE LEU ASN GLN SEQRES 10 C 289 SER TYR TYR LEU GLY GLU CYS SER PHE PHE GLU LYS SER SEQRES 11 C 289 GLN SER ILE MET GLU LEU TYR HIS GLY LEU GLU ARG PHE SEQRES 12 C 289 ASP PRO SER ASN ARG GLU GLY HIS SER ALA ARG ILE TYR SEQRES 13 C 289 PHE ASN THR LEU PHE GLY ASN ASP PHE THR ARG GLU SER SEQRES 14 C 289 ASP ASN ASP ILE ASN ALA ALA LEU ASP TYR GLY TYR THR SEQRES 15 C 289 LEU LEU LEU SER MET PHE ALA ARG GLU VAL VAL VAL CYS SEQRES 16 C 289 GLY CYS MET THR GLN ILE GLY LEU LYS HIS ALA ASN GLN SEQRES 17 C 289 PHE ASN GLN PHE ASN LEU ALA SER ASP ILE MET GLU PRO SEQRES 18 C 289 PHE ARG PRO ILE ILE ASP ARG ILE VAL TYR GLN ASN ARG SEQRES 19 C 289 HIS ASN ASN PHE VAL LYS ILE LYS LYS GLU LEU PHE SER SEQRES 20 C 289 ILE PHE SER GLU THR TYR LEU TYR ASN GLY LYS GLU MET SEQRES 21 C 289 TYR LEU SER ASN ILE VAL SER ASP TYR THR LYS LYS VAL SEQRES 22 C 289 ILE LYS ALA LEU ASN GLN LEU GLY GLU GLU ILE PRO GLU SEQRES 23 C 289 PHE ARG ILE SEQRES 1 D 114 MET SER TYR ARG TYR MET ARG MET ILE LEU MET PHE ASP SEQRES 2 D 114 MET PRO THR ASP THR ALA GLU GLU ARG LYS ALA TYR ARG SEQRES 3 D 114 LYS PHE ARG LYS PHE LEU LEU SER GLU GLY PHE ILE MET SEQRES 4 D 114 HIS GLN PHE SER VAL TYR SER LYS LEU LEU LEU ASN HIS SEQRES 5 D 114 THR ALA ASN THR ALA MET VAL GLY ARG LEU LYS ALA ASN SEQRES 6 D 114 ASN PRO LYS LYS GLY ASN ILE THR ILE LEU THR VAL THR SEQRES 7 D 114 GLU LYS GLN PHE ALA ARG MET ILE TYR LEU TYR GLY ASP SEQRES 8 D 114 LYS ASN THR SER ILE ALA ASN SER GLU GLU ARG LEU VAL SEQRES 9 D 114 PHE LEU GLY ASP ASN TYR CYS ASP GLU ASP SEQRES 1 E 6 DT DA DC DG DA DG SEQRES 1 F 48 DT DA DC DG DA DG DG DT DT DT DT DA DG SEQRES 2 F 48 DA DG DC DT DG DT DG DT DT DG DT DT DT SEQRES 3 F 48 DC DG DA DA DT DG DG DT DT DC DC DA DA SEQRES 4 F 48 DA DA DC DC DT DC DG DT DA SEQRES 1 G 75 DA DC DA DA DC DA DG DC DG DT DA DG DC SEQRES 2 G 75 DT DG DA DG DG DC DC DT DC DA DG DC DT SEQRES 3 G 75 DA DC DG DA DA DC DC DG DT DT DT DT DG SEQRES 4 G 75 DG DA DA DC DC DA DT DT DC DG DA DA DA SEQRES 5 G 75 DC DA DA DC DA DC DA DG DC DT DC DT DA SEQRES 6 G 75 DA DA DA DC DC DT DC DG DT DA SEQRES 1 H 33 DA DC DA DA DC DA DG DC DG DT DA DG DC SEQRES 2 H 33 DT DG DA DG DG DC DC DT DC DA DG DC DT SEQRES 3 H 33 DA DC DG DA DA DC DC HET CA A 201 1 HET CA D 201 1 HETNAM CA CALCIUM ION FORMUL 9 CA 2(CA 2+) HELIX 1 AA1 THR A 18 GLU A 35 1 18 HELIX 2 AA2 ASN A 51 ASN A 65 1 15 HELIX 3 AA3 THR B 52 GLU B 61 1 10 HELIX 4 AA4 SER B 87 ALA B 96 1 10 HELIX 5 AA5 LYS B 98 CYS B 124 1 27 HELIX 6 AA6 PHE B 126 GLY B 139 1 14 HELIX 7 AA7 ASN B 147 GLY B 162 1 16 HELIX 8 AA8 ASN B 174 VAL B 193 1 20 HELIX 9 AA9 PHE B 212 ILE B 218 1 7 HELIX 10 AB1 MET B 219 PRO B 221 5 3 HELIX 11 AB2 PHE B 222 ASN B 233 1 12 HELIX 12 AB3 ASN B 237 PHE B 246 1 10 HELIX 13 AB4 SER B 247 SER B 250 5 4 HELIX 14 AB5 LEU B 262 ASN B 278 1 17 HELIX 15 AB6 THR C 52 VAL C 59 1 8 HELIX 16 AB7 SER C 88 ALA C 96 1 9 HELIX 17 AB8 LYS C 98 CYS C 124 1 27 HELIX 18 AB9 PHE C 126 GLY C 139 1 14 HELIX 19 AC1 ASN C 147 PHE C 161 1 15 HELIX 20 AC2 ASN C 171 GLY C 196 1 26 HELIX 21 AC3 PHE C 212 GLU C 220 1 9 HELIX 22 AC4 PHE C 222 ASN C 233 1 12 HELIX 23 AC5 ASN C 237 LEU C 245 1 9 HELIX 24 AC6 PHE C 246 GLU C 251 1 6 HELIX 25 AC7 LEU C 262 ASN C 278 1 17 HELIX 26 AC8 THR D 18 GLY D 36 1 19 HELIX 27 AC9 ASN D 51 ASN D 65 1 15 HELIX 28 AD1 GLU D 79 ALA D 83 5 5 HELIX 29 AD2 SER D 95 SER D 99 5 5 SHEET 1 AA1 5 ILE A 38 GLN A 41 0 SHEET 2 AA1 5 VAL A 44 LEU A 49 -1 O SER A 46 N ILE A 38 SHEET 3 AA1 5 MET A 6 ASP A 13 -1 N MET A 6 O LEU A 49 SHEET 4 AA1 5 ASN A 71 THR A 78 -1 O LEU A 75 N ILE A 9 SHEET 5 AA1 5 TYR D 87 TYR D 89 -1 O LEU D 88 N ILE A 72 SHEET 1 AA2 5 ILE A 86 TYR A 87 0 SHEET 2 AA2 5 ASN D 71 ILE D 74 -1 O ILE D 74 N ILE A 86 SHEET 3 AA2 5 ARG D 7 ASP D 13 -1 N ASP D 13 O ASN D 71 SHEET 4 AA2 5 VAL D 44 LEU D 48 -1 O LYS D 47 N MET D 8 SHEET 5 AA2 5 ILE D 38 GLN D 41 -1 N GLN D 41 O VAL D 44 SHEET 1 AA3 4 LEU A 103 LEU A 106 0 SHEET 2 AA3 4 ARG B 5 VAL B 9 1 O VAL B 8 N LEU A 106 SHEET 3 AA3 4 ILE B 38 LEU B 43 1 O ASP B 39 N ARG B 5 SHEET 4 AA3 4 LEU B 64 ILE B 66 1 O ILE B 66 N LEU B 43 SHEET 1 AA4 3 SER B 16 LYS B 18 0 SHEET 2 AA4 3 HIS B 21 ARG B 25 -1 O ILE B 23 N SER B 16 SHEET 3 AA4 3 THR B 30 HIS B 34 -1 O ILE B 33 N LEU B 22 SHEET 1 AA5 5 VAL B 49 THR B 51 0 SHEET 2 AA5 5 VAL C 49 THR C 51 -1 O LEU C 50 N LEU B 50 SHEET 3 AA5 5 LYS C 14 LYS C 18 1 N LEU C 15 O VAL C 49 SHEET 4 AA5 5 HIS C 21 ARG C 25 -1 O ILE C 23 N SER C 16 SHEET 5 AA5 5 GLU C 31 HIS C 34 -1 O ILE C 33 N LEU C 22 SHEET 1 AA6 5 ALA B 76 PRO B 80 0 SHEET 2 AA6 5 PRO C 74 PRO C 80 -1 O THR C 79 N PHE B 77 SHEET 3 AA6 5 LEU C 64 CYS C 68 -1 N PHE C 67 O ALA C 76 SHEET 4 AA6 5 ILE C 38 LEU C 43 1 N LEU C 41 O ILE C 66 SHEET 5 AA6 5 ARG C 5 VAL C 9 1 N VAL C 9 O LEU C 42 SHEET 1 AA7 2 THR B 252 TYR B 255 0 SHEET 2 AA7 2 LYS B 258 TYR B 261 -1 O MET B 260 N TYR B 253 SHEET 1 AA8 2 THR C 252 TYR C 255 0 SHEET 2 AA8 2 LYS C 258 TYR C 261 -1 O LYS C 258 N TYR C 255 LINK O PHE A 12 CA CA A 201 1555 1555 2.78 LINK OG SER A 43 CA CA A 201 1555 1555 2.14 LINK CA CA A 201 OP1 DC G -13 1555 1555 2.05 LINK O PHE D 12 CA CA D 201 1555 1555 3.03 LINK OG SER D 43 CA CA D 201 1555 1555 2.23 LINK CA CA D 201 OP1 DC H 16 1555 1555 2.21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 60 7847 CONECT 317 7847 CONECT 5160 7848 CONECT 5416 7848 CONECT 6728 7847 CONECT 7667 7848 CONECT 7847 60 317 6728 CONECT 7848 5160 5416 7667 MASTER 400 0 2 29 31 0 0 6 7840 8 8 78 END