data_9H82 # _entry.id 9H82 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9H82 pdb_00009h82 10.2210/pdb9h82/pdb WWPDB D_1292142822 ? ? EMDB EMD-51918 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2024-12-04 ? 2 'Structure model' 1 1 2025-06-18 ? 3 'Structure model' 1 2 2025-06-25 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 3 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation.year' 4 2 'Structure model' '_em_admin.last_update' 5 3 'Structure model' '_citation.country' 6 3 'Structure model' '_citation.journal_abbrev' 7 3 'Structure model' '_citation.journal_id_ASTM' 8 3 'Structure model' '_citation.journal_id_CSD' 9 3 'Structure model' '_citation.journal_id_ISSN' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation_author.identifier_ORCID' 14 3 'Structure model' '_citation_author.name' 15 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9H82 _pdbx_database_status.recvd_initial_deposition_date 2024-10-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Small circular RNA dimer - Class 1' _pdbx_database_related.db_id EMD-51918 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email esa@inano.au.dk _pdbx_contact_author.name_first Ebbe _pdbx_contact_author.name_last Andersen _pdbx_contact_author.name_mi S. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6236-8164 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McRae, E.K.' 1 0000-0001-9105-2575 'Kristoffersen, E.L.' 2 0000-0001-8965-8201 'Holliger, P.' 3 0000-0002-3440-9854 'Andersen, E.S.' 4 0000-0002-6236-8164 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Roles of dimeric intermediates in RNA-catalyzed rolling circle synthesis.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaf057 _citation.pdbx_database_id_PubMed 40521664 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kristoffersen, E.L.' 1 ? primary 'McRae, E.K.S.' 2 ? primary 'Sorensen, N.R.' 3 ? primary 'Holliger, P.' 4 ? primary 'Andersen, E.S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;RNA (5'-R(P*AP*UP*CP*UP*UP*CP*UP*UP*CP*GP*AP*UP*UP*UP*CP*UP*UP*CP*CP*AP*UP*C)-3') ; 11191.466 1 ? ? ? 'Circular RNA' 2 polymer man 'RNA (36-MER)' 11817.235 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no AUCUUCUUCGAUUUCUUCCAGUUCUUCGCGUUCUUC AUCUUCUUCGAUUUCUUCCAGUUCUUCGCGUUCUUC E ? 2 polyribonucleotide no no UGGAAGAAAUCGAAGAAGAUGAAGAACGCGAAGAAC UGGAAGAAAUCGAAGAAGAUGAAGAACGCGAAGAAC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 U n 1 3 C n 1 4 U n 1 5 U n 1 6 C n 1 7 U n 1 8 U n 1 9 C n 1 10 G n 1 11 A n 1 12 U n 1 13 U n 1 14 U n 1 15 C n 1 16 U n 1 17 U n 1 18 C n 1 19 C n 1 20 A n 1 21 G n 1 22 U n 1 23 U n 1 24 C n 1 25 U n 1 26 U n 1 27 C n 1 28 G n 1 29 C n 1 30 G n 1 31 U n 1 32 U n 1 33 C n 1 34 U n 1 35 U n 1 36 C n 2 1 U n 2 2 G n 2 3 G n 2 4 A n 2 5 A n 2 6 G n 2 7 A n 2 8 A n 2 9 A n 2 10 U n 2 11 C n 2 12 G n 2 13 A n 2 14 A n 2 15 G n 2 16 A n 2 17 A n 2 18 G n 2 19 A n 2 20 U n 2 21 G n 2 22 A n 2 23 A n 2 24 G n 2 25 A n 2 26 A n 2 27 C n 2 28 G n 2 29 C n 2 30 G n 2 31 A n 2 32 A n 2 33 G n 2 34 A n 2 35 A n 2 36 C n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 36 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 36 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A E . n A 1 2 U 2 2 2 U U E . n A 1 3 C 3 3 3 C C E . n A 1 4 U 4 4 4 U U E . n A 1 5 U 5 5 5 U U E . n A 1 6 C 6 6 6 C C E . n A 1 7 U 7 7 7 U U E . n A 1 8 U 8 8 8 U U E . n A 1 9 C 9 9 9 C C E . n A 1 10 G 10 10 10 G G E . n A 1 11 A 11 11 11 A A E . n A 1 12 U 12 12 12 U U E . n A 1 13 U 13 13 13 U U E . n A 1 14 U 14 14 14 U U E . n A 1 15 C 15 15 15 C C E . n A 1 16 U 16 16 16 U U E . n A 1 17 U 17 17 17 U U E . n A 1 18 C 18 18 18 C C E . n A 1 19 C 19 19 19 C C E . n A 1 20 A 20 20 20 A A E . n A 1 21 G 21 33 ? ? ? E . n A 1 22 U 22 34 ? ? ? E . n A 1 23 U 23 35 35 U U E . n A 1 24 C 24 36 36 C C E . n A 1 25 U 25 37 ? ? ? E . n A 1 26 U 26 38 ? ? ? E . n A 1 27 C 27 39 ? ? ? E . n A 1 28 G 28 40 ? ? ? E . n A 1 29 C 29 41 ? ? ? E . n A 1 30 G 30 42 ? ? ? E . n A 1 31 U 31 43 ? ? ? E . n A 1 32 U 32 44 ? ? ? E . n A 1 33 C 33 45 ? ? ? E . n A 1 34 U 34 46 ? ? ? E . n A 1 35 U 35 47 ? ? ? E . n A 1 36 C 36 48 ? ? ? E . n B 2 1 U 1 1 1 U U B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 A 4 4 4 A A B . n B 2 5 A 5 5 5 A A B . n B 2 6 G 6 6 6 G G B . n B 2 7 A 7 7 7 A A B . n B 2 8 A 8 8 8 A A B . n B 2 9 A 9 9 9 A A B . n B 2 10 U 10 10 10 U U B . n B 2 11 C 11 11 11 C C B . n B 2 12 G 12 12 12 G G B . n B 2 13 A 13 13 13 A A B . n B 2 14 A 14 14 14 A A B . n B 2 15 G 15 15 15 G G B . n B 2 16 A 16 16 16 A A B . n B 2 17 A 17 17 17 A A B . n B 2 18 G 18 18 18 G G B . n B 2 19 A 19 19 19 A A B . n B 2 20 U 20 20 20 U U B . n B 2 21 G 21 21 21 G G B . n B 2 22 A 22 22 22 A A B . n B 2 23 A 23 23 23 A A B . n B 2 24 G 24 24 24 G G B . n B 2 25 A 25 25 25 A A B . n B 2 26 A 26 26 26 A A B . n B 2 27 C 27 27 27 C C B . n B 2 28 G 28 28 28 G G B . n B 2 29 C 29 29 29 C C B . n B 2 30 G 30 30 30 G G B . n B 2 31 A 31 31 31 A A B . n B 2 32 A 32 32 32 A A B . n B 2 33 G 33 33 33 G G B . n B 2 34 A 34 34 34 A A B . n B 2 35 A 35 35 35 A A B . n B 2 36 C 36 36 36 C C B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9H82 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9H82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9H82 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9H82 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 9H82 _struct.title 'Small circular RNA dimer - Class 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9H82 _struct_keywords.text 'small RNA circles, dimer, RNA crossover, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9H82 9H82 ? 1 ? 1 2 PDB 9H82 9H82 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9H82 E 1 ? 36 ? 9H82 1 ? 48 ? 1 48 2 2 9H82 B 1 ? 36 ? 9H82 1 ? 36 ? 1 36 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 B U 20 N3 ? ? E A 1 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 B U 20 O4 ? ? E A 1 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 19 N1 ? ? E U 2 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 19 N6 ? ? E U 2 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 18 N1 ? ? E C 3 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 18 O6 ? ? E C 3 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 18 N2 ? ? E C 3 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 17 N1 ? ? E U 4 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 17 N6 ? ? E U 4 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 16 N1 ? ? E U 5 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 16 N6 ? ? E U 5 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 15 N1 ? ? E C 6 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 15 O6 ? ? E C 6 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 15 N2 ? ? E C 6 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 14 N1 ? ? E U 7 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 14 N6 ? ? E U 7 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 13 N1 ? ? E U 8 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 13 N6 ? ? E U 8 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 12 N1 ? ? E C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 12 O6 ? ? E C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 12 N2 ? ? E C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 11 N3 ? ? E G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 11 O2 ? ? E G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 11 N4 ? ? E G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 10 N3 ? ? E A 11 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 10 O4 ? ? E A 11 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 9 N1 ? ? E U 12 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 9 N6 ? ? E U 12 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 8 N1 ? ? E U 13 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 13 O4 ? ? ? 1_555 B A 8 N6 ? ? E U 13 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 B A 7 N1 ? ? E U 14 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 O4 ? ? ? 1_555 B A 7 N6 ? ? E U 14 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 6 N1 ? ? E C 15 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 6 O6 ? ? E C 15 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 6 N2 ? ? E C 15 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 16 N3 ? ? ? 1_555 B A 5 N1 ? ? E U 16 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 16 O4 ? ? ? 1_555 B A 5 N6 ? ? E U 16 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 17 N3 ? ? ? 1_555 B A 4 N1 ? ? E U 17 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 17 O4 ? ? ? 1_555 B A 4 N6 ? ? E U 17 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 18 N3 ? ? ? 1_555 B G 3 N1 ? ? E C 18 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 18 N4 ? ? ? 1_555 B G 3 O6 ? ? E C 18 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 18 O2 ? ? ? 1_555 B G 3 N2 ? ? E C 18 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 2 N1 ? ? E C 19 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 2 O6 ? ? E C 19 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 2 N2 ? ? E C 19 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 20 N1 ? ? ? 1_555 B U 1 N3 ? ? E A 20 B U 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 20 N6 ? ? ? 1_555 B U 1 O4 ? ? E A 20 B U 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 23 N3 ? ? ? 1_555 B A 22 N1 ? ? E U 35 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 23 O4 ? ? ? 1_555 B A 22 N6 ? ? E U 35 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 24 N3 ? ? ? 1_555 B G 21 N1 ? ? E C 36 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 24 N4 ? ? ? 1_555 B G 21 O6 ? ? E C 36 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 24 O2 ? ? ? 1_555 B G 21 N2 ? ? E C 36 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9H82 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" B G 15 ? ? OP1 B A 16 ? ? 1.57 2 1 P E A 1 ? ? "O3'" E C 36 ? ? 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 E A 1 ? ? C6 E A 1 ? ? N1 E A 1 ? ? 121.21 117.70 3.51 0.50 N 2 1 N1 E A 1 ? ? C6 E A 1 ? ? N6 E A 1 ? ? 114.32 118.60 -4.28 0.60 N 3 1 "O4'" E C 3 ? ? "C1'" E C 3 ? ? N1 E C 3 ? ? 113.63 108.50 5.13 0.70 N 4 1 N3 E C 3 ? ? C2 E C 3 ? ? O2 E C 3 ? ? 117.21 121.90 -4.69 0.70 N 5 1 N3 E C 6 ? ? C2 E C 6 ? ? O2 E C 6 ? ? 117.24 121.90 -4.66 0.70 N 6 1 "O4'" E U 7 ? ? "C1'" E U 7 ? ? N1 E U 7 ? ? 112.72 108.50 4.22 0.70 N 7 1 "O4'" E C 9 ? ? "C1'" E C 9 ? ? N1 E C 9 ? ? 113.88 108.50 5.38 0.70 N 8 1 N3 E C 9 ? ? C2 E C 9 ? ? O2 E C 9 ? ? 117.59 121.90 -4.31 0.70 N 9 1 C5 E A 11 ? ? C6 E A 11 ? ? N1 E A 11 ? ? 120.77 117.70 3.07 0.50 N 10 1 N1 E A 11 ? ? C6 E A 11 ? ? N6 E A 11 ? ? 113.93 118.60 -4.67 0.60 N 11 1 N3 E C 15 ? ? C2 E C 15 ? ? O2 E C 15 ? ? 117.08 121.90 -4.82 0.70 N 12 1 "O4'" E U 16 ? ? "C1'" E U 16 ? ? N1 E U 16 ? ? 113.00 108.50 4.50 0.70 N 13 1 "O4'" E U 17 ? ? "C1'" E U 17 ? ? N1 E U 17 ? ? 112.95 108.50 4.45 0.70 N 14 1 N3 E C 18 ? ? C2 E C 18 ? ? O2 E C 18 ? ? 117.58 121.90 -4.32 0.70 N 15 1 N3 E C 19 ? ? C2 E C 19 ? ? O2 E C 19 ? ? 117.09 121.90 -4.81 0.70 N 16 1 "C3'" E A 20 ? ? "C2'" E A 20 ? ? "C1'" E A 20 ? ? 106.93 101.50 5.43 0.80 N 17 1 C5 E A 20 ? ? C6 E A 20 ? ? N1 E A 20 ? ? 120.94 117.70 3.24 0.50 N 18 1 N1 E A 20 ? ? C6 E A 20 ? ? N6 E A 20 ? ? 114.59 118.60 -4.01 0.60 N 19 1 "O4'" E C 36 ? ? "C1'" E C 36 ? ? N1 E C 36 ? ? 112.83 108.50 4.33 0.70 N 20 1 N3 E C 36 ? ? C2 E C 36 ? ? O2 E C 36 ? ? 117.58 121.90 -4.32 0.70 N 21 1 "C4'" B G 3 ? ? "C3'" B G 3 ? ? "O3'" B G 3 ? ? 127.66 113.00 14.66 2.00 N 22 1 "C3'" B G 3 ? ? "C2'" B G 3 ? ? "C1'" B G 3 ? ? 106.44 101.50 4.94 0.80 N 23 1 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 115.50 108.50 7.00 0.70 N 24 1 C5 B A 4 ? ? C6 B A 4 ? ? N1 B A 4 ? ? 121.14 117.70 3.44 0.50 N 25 1 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 113.05 108.50 4.55 0.70 N 26 1 C4 B A 5 ? ? C5 B A 5 ? ? C6 B A 5 ? ? 113.98 117.00 -3.02 0.50 N 27 1 C5 B A 5 ? ? C6 B A 5 ? ? N1 B A 5 ? ? 121.02 117.70 3.32 0.50 N 28 1 N1 B A 5 ? ? C6 B A 5 ? ? N6 B A 5 ? ? 113.57 118.60 -5.03 0.60 N 29 1 C5 B A 7 ? ? C6 B A 7 ? ? N1 B A 7 ? ? 121.05 117.70 3.35 0.50 N 30 1 N1 B A 7 ? ? C6 B A 7 ? ? N6 B A 7 ? ? 114.50 118.60 -4.10 0.60 N 31 1 C4 B A 8 ? ? C5 B A 8 ? ? C6 B A 8 ? ? 113.98 117.00 -3.02 0.50 N 32 1 C5 B A 8 ? ? C6 B A 8 ? ? N1 B A 8 ? ? 121.18 117.70 3.48 0.50 N 33 1 N1 B A 8 ? ? C6 B A 8 ? ? N6 B A 8 ? ? 114.04 118.60 -4.56 0.60 N 34 1 C4 B A 9 ? ? C5 B A 9 ? ? C6 B A 9 ? ? 113.97 117.00 -3.03 0.50 N 35 1 C5 B A 9 ? ? C6 B A 9 ? ? N1 B A 9 ? ? 121.05 117.70 3.35 0.50 N 36 1 N1 B A 9 ? ? C6 B A 9 ? ? N6 B A 9 ? ? 114.01 118.60 -4.59 0.60 N 37 1 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.27 108.50 4.77 0.70 N 38 1 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.30 121.90 -4.60 0.70 N 39 1 "O4'" B G 12 ? ? "C1'" B G 12 ? ? N9 B G 12 ? ? 112.89 108.50 4.39 0.70 N 40 1 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.17 117.70 3.47 0.50 N 41 1 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.72 118.60 -3.88 0.60 N 42 1 C4 B A 14 ? ? C5 B A 14 ? ? C6 B A 14 ? ? 113.89 117.00 -3.11 0.50 N 43 1 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 120.81 117.70 3.11 0.50 N 44 1 N1 B A 14 ? ? C6 B A 14 ? ? N6 B A 14 ? ? 113.63 118.60 -4.97 0.60 N 45 1 "O4'" B G 15 ? ? "C1'" B G 15 ? ? N9 B G 15 ? ? 112.89 108.50 4.39 0.70 N 46 1 "O3'" B G 15 ? ? P B A 16 ? ? "O5'" B A 16 ? ? 141.55 104.00 37.55 1.90 Y 47 1 "O3'" B G 15 ? ? P B A 16 ? ? OP2 B A 16 ? ? 86.98 105.20 -18.22 2.20 Y 48 1 "O3'" B G 15 ? ? P B A 16 ? ? OP1 B A 16 ? ? 79.40 105.20 -25.80 2.20 Y 49 1 OP1 B A 16 ? ? P B A 16 ? ? OP2 B A 16 ? ? 131.95 119.60 12.35 1.50 N 50 1 "O5'" B A 16 ? ? P B A 16 ? ? OP1 B A 16 ? ? 81.54 105.70 -24.16 0.90 N 51 1 "O5'" B A 16 ? ? P B A 16 ? ? OP2 B A 16 ? ? 81.43 105.70 -24.27 0.90 N 52 1 C4 B A 16 ? ? C5 B A 16 ? ? C6 B A 16 ? ? 113.88 117.00 -3.12 0.50 N 53 1 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.10 117.70 3.40 0.50 N 54 1 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.35 118.60 -5.25 0.60 N 55 1 C4 B A 17 ? ? C5 B A 17 ? ? C6 B A 17 ? ? 113.99 117.00 -3.01 0.50 N 56 1 C5 B A 17 ? ? C6 B A 17 ? ? N1 B A 17 ? ? 121.07 117.70 3.37 0.50 N 57 1 N1 B A 17 ? ? C6 B A 17 ? ? N6 B A 17 ? ? 113.50 118.60 -5.10 0.60 N 58 1 C4 B A 19 ? ? C5 B A 19 ? ? C6 B A 19 ? ? 113.96 117.00 -3.04 0.50 N 59 1 C5 B A 19 ? ? C6 B A 19 ? ? N1 B A 19 ? ? 120.87 117.70 3.17 0.50 N 60 1 N1 B A 19 ? ? C6 B A 19 ? ? N6 B A 19 ? ? 113.50 118.60 -5.10 0.60 N 61 1 "O4'" B G 21 ? ? "C1'" B G 21 ? ? N9 B G 21 ? ? 112.85 108.50 4.35 0.70 N 62 1 "C5'" B A 22 ? ? "C4'" B A 22 ? ? "O4'" B A 22 ? ? 115.71 109.80 5.91 0.90 N 63 1 "O4'" B A 22 ? ? "C1'" B A 22 ? ? N9 B A 22 ? ? 114.94 108.50 6.44 0.70 N 64 1 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 121.52 117.70 3.82 0.50 N 65 1 C4 B A 23 ? ? C5 B A 23 ? ? C6 B A 23 ? ? 113.98 117.00 -3.02 0.50 N 66 1 C5 B A 23 ? ? C6 B A 23 ? ? N1 B A 23 ? ? 121.40 117.70 3.70 0.50 N 67 1 N1 B A 23 ? ? C6 B A 23 ? ? N6 B A 23 ? ? 113.30 118.60 -5.30 0.60 N 68 1 "O4'" B A 25 ? ? "C1'" B A 25 ? ? N9 B A 25 ? ? 115.36 108.50 6.86 0.70 N 69 1 C4 B A 25 ? ? C5 B A 25 ? ? C6 B A 25 ? ? 113.94 117.00 -3.06 0.50 N 70 1 C5 B A 25 ? ? C6 B A 25 ? ? N1 B A 25 ? ? 121.42 117.70 3.72 0.50 N 71 1 N1 B A 25 ? ? C6 B A 25 ? ? N6 B A 25 ? ? 112.93 118.60 -5.67 0.60 N 72 1 C5 B A 26 ? ? C6 B A 26 ? ? N1 B A 26 ? ? 120.93 117.70 3.23 0.50 N 73 1 N1 B A 26 ? ? C6 B A 26 ? ? N6 B A 26 ? ? 113.45 118.60 -5.15 0.60 N 74 1 N3 B C 29 ? ? C2 B C 29 ? ? O2 B C 29 ? ? 117.49 121.90 -4.41 0.70 N 75 1 C5 B A 31 ? ? C6 B A 31 ? ? N1 B A 31 ? ? 121.41 117.70 3.71 0.50 N 76 1 N1 B A 31 ? ? C6 B A 31 ? ? N6 B A 31 ? ? 113.42 118.60 -5.18 0.60 N 77 1 C5 B A 32 ? ? C6 B A 32 ? ? N1 B A 32 ? ? 121.39 117.70 3.69 0.50 N 78 1 N1 B A 32 ? ? C6 B A 32 ? ? N6 B A 32 ? ? 113.11 118.60 -5.49 0.60 N 79 1 C4 B A 34 ? ? C5 B A 34 ? ? C6 B A 34 ? ? 113.90 117.00 -3.10 0.50 N 80 1 C5 B A 34 ? ? C6 B A 34 ? ? N1 B A 34 ? ? 121.45 117.70 3.75 0.50 N 81 1 N1 B A 34 ? ? C6 B A 34 ? ? N6 B A 34 ? ? 113.09 118.60 -5.51 0.60 N 82 1 "O4'" B A 35 ? ? "C1'" B A 35 ? ? N9 B A 35 ? ? 112.93 108.50 4.43 0.70 N 83 1 C4 B A 35 ? ? C5 B A 35 ? ? C6 B A 35 ? ? 113.84 117.00 -3.16 0.50 N 84 1 C5 B A 35 ? ? C6 B A 35 ? ? N1 B A 35 ? ? 121.42 117.70 3.72 0.50 N 85 1 N1 B A 35 ? ? C6 B A 35 ? ? N6 B A 35 ? ? 113.11 118.60 -5.49 0.60 N 86 1 N1 B C 36 ? ? C2 B C 36 ? ? O2 B C 36 ? ? 122.68 118.90 3.78 0.60 N 87 1 N3 B C 36 ? ? C2 B C 36 ? ? O2 B C 36 ? ? 116.78 121.90 -5.12 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A E 1 ? ? 0.093 'SIDE CHAIN' 2 1 U E 8 ? ? 0.071 'SIDE CHAIN' 3 1 A E 11 ? ? 0.057 'SIDE CHAIN' 4 1 U E 12 ? ? 0.086 'SIDE CHAIN' 5 1 U E 35 ? ? 0.129 'SIDE CHAIN' 6 1 U B 1 ? ? 0.075 'SIDE CHAIN' 7 1 A B 4 ? ? 0.099 'SIDE CHAIN' 8 1 A B 13 ? ? 0.057 'SIDE CHAIN' 9 1 G B 15 ? ? 0.072 'SIDE CHAIN' 10 1 A B 19 ? ? 0.065 'SIDE CHAIN' 11 1 G B 21 ? ? 0.080 'SIDE CHAIN' 12 1 A B 22 ? ? 0.076 'SIDE CHAIN' 13 1 A B 23 ? ? 0.127 'SIDE CHAIN' 14 1 C B 27 ? ? 0.065 'SIDE CHAIN' 15 1 G B 28 ? ? 0.075 'SIDE CHAIN' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9H82 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 413 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol OTHER # _em_3d_reconstruction.entry_id 9H82 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 7.29 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 48117 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Dimer intermediate class 1 composed of 1 circular RNA and a complimentary RNA' _em_entity_assembly.details 'Dimer prepared by annealing' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9H82 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_vitrification.entry_id 9H82 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature 10 _em_vitrification.instrument 'LEICA EM GP' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9H82 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 E G 33 ? A G 21 2 1 Y 1 E U 34 ? A U 22 3 1 Y 1 E U 37 ? A U 25 4 1 Y 1 E U 38 ? A U 26 5 1 Y 1 E C 39 ? A C 27 6 1 Y 1 E G 40 ? A G 28 7 1 Y 1 E C 41 ? A C 29 8 1 Y 1 E G 42 ? A G 30 9 1 Y 1 E U 43 ? A U 31 10 1 Y 1 E U 44 ? A U 32 11 1 Y 1 E C 45 ? A C 33 12 1 Y 1 E U 46 ? A U 34 13 1 Y 1 E U 47 ? A U 35 14 1 Y 1 E C 48 ? A C 36 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2024-10-28 _em_admin.deposition_site PDBE _em_admin.entry_id 9H82 _em_admin.last_update 2025-06-25 _em_admin.map_release_date 2024-12-04 _em_admin.title 'Small circular RNA dimer - Class 1' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.5 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images 6820 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 668921 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.5.3 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.5.3 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.6.1 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? cryoSPARC 4.5.3 RECONSTRUCTION NU-refinement 12 1 ? ? cryoSPARC 4.5.3 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.21.2-5419 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9H82 'double helix' 9H82 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 23 1_555 B A 22 1_555 0.131 -0.014 0.682 -29.256 1.199 -9.047 1 E_U35:A22_B E 35 ? B 22 ? 20 1 1 A C 24 1_555 B G 21 1_555 0.084 -0.080 0.473 -18.724 -19.499 0.333 2 E_C36:G21_B E 36 ? B 21 ? 19 1 1 A A 1 1_555 B U 20 1_555 0.376 0.064 -0.408 -16.533 0.295 -4.864 3 E_A1:U20_B E 1 ? B 20 ? 20 1 1 A U 2 1_555 B A 19 1_555 0.076 -0.035 -0.376 10.006 -9.112 4.375 4 E_U2:A19_B E 2 ? B 19 ? 20 1 1 A C 3 1_555 B G 18 1_555 0.321 -0.119 -0.079 -3.542 -20.055 3.022 5 E_C3:G18_B E 3 ? B 18 ? 19 1 1 A U 4 1_555 B A 17 1_555 -0.038 -0.035 -0.154 0.079 -5.489 0.749 6 E_U4:A17_B E 4 ? B 17 ? 20 1 1 A U 5 1_555 B A 16 1_555 0.145 -0.011 -0.686 22.933 -4.771 1.480 7 E_U5:A16_B E 5 ? B 16 ? 20 1 1 A C 6 1_555 B G 15 1_555 0.116 -0.134 -0.139 3.398 -21.812 -0.330 8 E_C6:G15_B E 6 ? B 15 ? 19 1 1 A U 7 1_555 B A 14 1_555 0.195 -0.063 0.290 -4.244 -11.296 4.585 9 E_U7:A14_B E 7 ? B 14 ? 20 1 1 A U 8 1_555 B A 13 1_555 0.033 -0.080 -0.492 3.332 -16.317 -2.793 10 E_U8:A13_B E 8 ? B 13 ? 20 1 1 A C 9 1_555 B G 12 1_555 0.238 -0.092 0.113 1.071 -11.159 1.076 11 E_C9:G12_B E 9 ? B 12 ? 19 1 1 A G 10 1_555 B C 11 1_555 -0.647 -0.214 0.363 9.455 -5.596 -0.094 12 E_G10:C11_B E 10 ? B 11 ? 19 1 1 A A 11 1_555 B U 10 1_555 -0.210 -0.077 -0.052 9.473 -14.561 2.599 13 E_A11:U10_B E 11 ? B 10 ? 20 1 1 A U 12 1_555 B A 9 1_555 -0.094 -0.053 -0.419 10.745 -16.789 -1.487 14 E_U12:A9_B E 12 ? B 9 ? 20 1 1 A U 13 1_555 B A 8 1_555 -0.008 -0.051 -0.341 8.091 -10.701 -0.983 15 E_U13:A8_B E 13 ? B 8 ? 20 1 1 A U 14 1_555 B A 7 1_555 0.136 -0.087 -0.392 4.369 -11.641 -0.081 16 E_U14:A7_B E 14 ? B 7 ? 20 1 1 A C 15 1_555 B G 6 1_555 0.394 -0.139 0.118 -10.137 -11.474 -0.100 17 E_C15:G6_B E 15 ? B 6 ? 19 1 1 A U 16 1_555 B A 5 1_555 0.115 0.026 0.287 1.025 -8.883 6.423 18 E_U16:A5_B E 16 ? B 5 ? 20 1 1 A U 17 1_555 B A 4 1_555 0.553 -0.374 -1.205 13.429 -22.280 3.800 19 E_U17:A4_B E 17 ? B 4 ? 20 1 1 A C 18 1_555 B G 3 1_555 0.139 -0.109 -0.165 -14.814 3.591 -0.088 20 E_C18:G3_B E 18 ? B 3 ? 19 1 1 A C 19 1_555 B G 2 1_555 0.933 -0.175 0.147 -8.502 -0.136 4.099 21 E_C19:G2_B E 19 ? B 2 ? 19 1 1 A A 20 1_555 B U 1 1_555 -0.134 0.717 0.454 -47.407 -27.694 -21.292 22 E_A20:U1_B E 20 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 23 1_555 B A 22 1_555 A C 24 1_555 B G 21 1_555 1.489 -2.472 2.588 15.800 10.984 31.306 -5.114 -0.672 2.126 18.346 -26.391 36.621 1 EE_U35C36:G21A22_BB E 35 ? B 22 ? E 36 ? B 21 ? 1 A C 24 1_555 B G 21 1_555 A A 1 1_555 B U 20 1_555 -1.091 -0.988 3.108 6.755 8.973 29.905 -3.223 3.059 2.421 16.666 -12.548 31.900 2 EE_C36A1:U20G21_BB E 36 ? B 21 ? E 1 ? B 20 ? 1 A A 1 1_555 B U 20 1_555 A U 2 1_555 B A 19 1_555 0.917 -0.361 2.700 -2.278 12.274 30.379 -2.323 -1.937 2.312 22.277 4.134 32.788 3 EE_A1U2:A19U20_BB E 1 ? B 20 ? E 2 ? B 19 ? 1 A U 2 1_555 B A 19 1_555 A C 3 1_555 B G 18 1_555 0.862 -2.176 3.402 3.389 26.737 26.861 -6.092 -0.981 1.003 45.529 -5.771 37.875 4 EE_U2C3:G18A19_BB E 2 ? B 19 ? E 3 ? B 18 ? 1 A C 3 1_555 B G 18 1_555 A U 4 1_555 B A 17 1_555 -0.329 -1.382 3.200 0.944 11.698 28.659 -4.628 0.781 2.449 22.478 -1.815 30.922 5 EE_C3U4:A17G18_BB E 3 ? B 18 ? E 4 ? B 17 ? 1 A U 4 1_555 B A 17 1_555 A U 5 1_555 B A 16 1_555 0.248 -1.080 2.856 1.834 1.710 27.161 -2.659 -0.131 2.795 3.631 -3.895 27.275 6 EE_U4U5:A16A17_BB E 4 ? B 17 ? E 5 ? B 16 ? 1 A U 5 1_555 B A 16 1_555 A C 6 1_555 B G 15 1_555 0.745 -2.014 3.505 0.189 23.644 36.213 -4.865 -0.998 1.903 33.960 -0.271 43.031 7 EE_U5C6:G15A16_BB E 5 ? B 16 ? E 6 ? B 15 ? 1 A C 6 1_555 B G 15 1_555 A U 7 1_555 B A 14 1_555 0.395 -1.806 3.385 -1.668 6.899 30.994 -4.529 -1.019 2.901 12.703 3.072 31.777 8 EE_C6U7:A14G15_BB E 6 ? B 15 ? E 7 ? B 14 ? 1 A U 7 1_555 B A 14 1_555 A U 8 1_555 B A 13 1_555 -0.631 -1.149 2.966 6.311 3.394 33.707 -2.401 1.924 2.682 5.773 -10.734 34.439 9 EE_U7U8:A13A14_BB E 7 ? B 14 ? E 8 ? B 13 ? 1 A U 8 1_555 B A 13 1_555 A C 9 1_555 B G 12 1_555 0.951 -1.690 3.312 -3.034 9.899 28.773 -5.007 -2.357 2.496 19.155 5.870 30.542 10 EE_U8C9:G12A13_BB E 8 ? B 13 ? E 9 ? B 12 ? 1 A C 9 1_555 B G 12 1_555 A G 10 1_555 B C 11 1_555 -0.774 -1.518 2.964 -4.508 5.368 28.983 -3.942 0.675 2.731 10.532 8.845 29.801 11 EE_C9G10:C11G12_BB E 9 ? B 12 ? E 10 ? B 11 ? 1 A G 10 1_555 B C 11 1_555 A A 11 1_555 B U 10 1_555 -0.308 -2.090 3.159 -0.690 9.720 29.171 -5.598 0.464 2.363 18.653 1.323 30.722 12 EE_G10A11:U10C11_BB E 10 ? B 11 ? E 11 ? B 10 ? 1 A A 11 1_555 B U 10 1_555 A U 12 1_555 B A 9 1_555 -0.762 -1.675 3.143 -0.848 3.753 33.798 -3.425 1.175 2.963 6.429 1.452 34.009 13 EE_A11U12:A9U10_BB E 11 ? B 10 ? E 12 ? B 9 ? 1 A U 12 1_555 B A 9 1_555 A U 13 1_555 B A 8 1_555 0.006 -1.290 3.294 -1.605 6.715 33.524 -3.220 -0.256 2.984 11.490 2.746 34.207 14 EE_U12U13:A8A9_BB E 12 ? B 9 ? E 13 ? B 8 ? 1 A U 13 1_555 B A 8 1_555 A U 14 1_555 B A 7 1_555 0.418 -1.554 3.293 0.874 9.041 32.840 -4.019 -0.583 2.789 15.622 -1.510 34.040 15 EE_U13U14:A7A8_BB E 13 ? B 8 ? E 14 ? B 7 ? 1 A U 14 1_555 B A 7 1_555 A C 15 1_555 B G 6 1_555 0.603 -2.252 3.459 1.090 17.249 33.517 -5.525 -0.807 2.108 27.738 -1.753 37.597 16 EE_U14C15:G6A7_BB E 14 ? B 7 ? E 15 ? B 6 ? 1 A C 15 1_555 B G 6 1_555 A U 16 1_555 B A 5 1_555 0.447 -2.169 2.817 1.684 9.043 23.110 -7.067 -0.662 1.874 21.510 -4.007 24.850 17 EE_C15U16:A5G6_BB E 15 ? B 6 ? E 16 ? B 5 ? 1 A U 16 1_555 B A 5 1_555 A U 17 1_555 B A 4 1_555 -0.771 -0.910 3.017 10.936 2.175 27.326 -2.191 3.545 2.455 4.379 -22.022 29.473 18 EE_U16U17:A4A5_BB E 16 ? B 5 ? E 17 ? B 4 ? 1 A U 17 1_555 B A 4 1_555 A C 18 1_555 B G 3 1_555 1.418 -1.419 4.223 -3.712 7.292 40.603 -2.973 -2.498 3.785 10.381 5.284 41.385 19 EE_U17C18:G3A4_BB E 17 ? B 4 ? E 18 ? B 3 ? 1 A C 18 1_555 B G 3 1_555 A C 19 1_555 B G 2 1_555 0.243 -1.935 3.353 -1.466 0.663 28.175 -4.126 -0.846 3.291 1.361 3.007 28.220 20 EE_C18C19:G2G3_BB E 18 ? B 3 ? E 19 ? B 2 ? 1 A C 19 1_555 B G 2 1_555 A A 20 1_555 B U 1 1_555 1.154 -1.525 3.486 17.860 24.957 52.051 -2.826 -0.228 2.794 26.041 -18.636 59.877 21 EE_C19A20:U1G2_BB E 19 ? B 2 ? E 20 ? B 1 ? # _pdbx_audit_support.funding_organization 'Novo Nordisk Foundation' _pdbx_audit_support.country Denmark _pdbx_audit_support.grant_number NNF21OC0070452 _pdbx_audit_support.ordinal 1 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9H82 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #