HEADER OXIDOREDUCTASE 12-NOV-24 9HDM TITLE CRYSTAL STRUCTURE OF PYRIMIDINE NUCLEOSIDE 2'-HYDROXYLASE (PDN2'H) TITLE 2 FROM NEUROSPORA CRASSA IN COMPLEX WITH THYMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLAVAMINATE SYNTHASE-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 GENE: NCU02560; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE, NUCLEOSIDE HYDROXYLASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FRIEDRICH,F.GENZ,O.EINSLE,M.MUELLER,N.D.FESSNER REVDAT 1 26-FEB-25 9HDM 0 JRNL AUTH F.GENZ,F.FRIEDRICH,C.LONARZ,O.EINSLE,M.JUNG,M.MULLER, JRNL AUTH 2 N.D.FESSNER JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF PYRIMIDINE NUCLEOSIDE JRNL TITL 2 2'-HYDROXYLASE JRNL REF ACS CATALYSIS 2025 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.4C07764 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 106195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 5425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9600 - 4.8100 1.00 3611 189 0.1689 0.1968 REMARK 3 2 4.8100 - 3.8200 1.00 3499 166 0.1341 0.1620 REMARK 3 3 3.8200 - 3.3400 1.00 3432 196 0.1499 0.1595 REMARK 3 4 3.3400 - 3.0300 1.00 3411 157 0.1665 0.2031 REMARK 3 5 3.0300 - 2.8200 1.00 3387 188 0.1742 0.1907 REMARK 3 6 2.8200 - 2.6500 1.00 3373 186 0.1685 0.2013 REMARK 3 7 2.6500 - 2.5200 1.00 3380 150 0.1672 0.1956 REMARK 3 8 2.5200 - 2.4100 1.00 3380 182 0.1773 0.2006 REMARK 3 9 2.4100 - 2.3200 1.00 3352 187 0.1762 0.2072 REMARK 3 10 2.3200 - 2.2400 1.00 3371 180 0.1733 0.2153 REMARK 3 11 2.2400 - 2.1700 1.00 3391 162 0.1661 0.1877 REMARK 3 12 2.1700 - 2.1000 1.00 3331 212 0.1674 0.1974 REMARK 3 13 2.1000 - 2.0500 1.00 3322 183 0.1743 0.1936 REMARK 3 14 2.0500 - 2.0000 1.00 3328 197 0.1791 0.2151 REMARK 3 15 2.0000 - 1.9500 1.00 3343 180 0.1865 0.1986 REMARK 3 16 1.9500 - 1.9100 1.00 3352 185 0.1938 0.2026 REMARK 3 17 1.9100 - 1.8700 1.00 3343 159 0.2082 0.2452 REMARK 3 18 1.8700 - 1.8400 1.00 3314 187 0.2078 0.2412 REMARK 3 19 1.8400 - 1.8000 1.00 3356 148 0.1991 0.2330 REMARK 3 20 1.8000 - 1.7700 1.00 3341 184 0.2059 0.2291 REMARK 3 21 1.7700 - 1.7500 1.00 3318 203 0.2027 0.2111 REMARK 3 22 1.7500 - 1.7200 1.00 3312 186 0.2056 0.2376 REMARK 3 23 1.7200 - 1.6900 1.00 3302 192 0.2199 0.2635 REMARK 3 24 1.6900 - 1.6700 1.00 3311 190 0.2416 0.2548 REMARK 3 25 1.6700 - 1.6500 1.00 3352 181 0.2482 0.2646 REMARK 3 26 1.6500 - 1.6300 1.00 3300 175 0.2652 0.2776 REMARK 3 27 1.6300 - 1.6100 1.00 3300 192 0.2742 0.3072 REMARK 3 28 1.6100 - 1.5900 1.00 3305 183 0.2981 0.3144 REMARK 3 29 1.5900 - 1.5700 1.00 3293 178 0.3255 0.3821 REMARK 3 30 1.5700 - 1.5500 1.00 3360 167 0.3404 0.3881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5493 REMARK 3 ANGLE : 0.844 7484 REMARK 3 CHIRALITY : 0.056 845 REMARK 3 PLANARITY : 0.007 983 REMARK 3 DIHEDRAL : 10.996 2046 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.7004 21.0525 -34.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1633 REMARK 3 T33: 0.1914 T12: 0.0090 REMARK 3 T13: 0.0129 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.5002 L22: 0.3698 REMARK 3 L33: 0.7325 L12: 0.2574 REMARK 3 L13: 0.4594 L23: 0.2327 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0116 S13: -0.0183 REMARK 3 S21: -0.0056 S22: 0.0079 S23: -0.0130 REMARK 3 S31: 0.0106 S32: 0.0239 S33: 0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9HDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1292140682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM07 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106321 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 115.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 2.82700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % (W/V) PEG 3350, 0.2 M MGCL2 X 6 REMARK 280 H2O AND 0.1 M HEPES AT PH 7.5; CO-CRYSTALLIZED WITH 15 MM REMARK 280 THYMIDINE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.99150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.86600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.14650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.86600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.99150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.14650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 LYS A 90 REMARK 465 ASN A 91 REMARK 465 GLY A 92 REMARK 465 GLN A 93 REMARK 465 VAL A 94 REMARK 465 THR A 206 REMARK 465 ALA A 207 REMARK 465 THR A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 LYS A 212 REMARK 465 GLU A 213 REMARK 465 SER A 214 REMARK 465 ASN A 215 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 GLU A 218 REMARK 465 GLU A 219 REMARK 465 GLY A 220 REMARK 465 ASP A 221 REMARK 465 GLU A 222 REMARK 465 ASP A 223 REMARK 465 ASP A 224 REMARK 465 TRP A 225 REMARK 465 PRO A 255 REMARK 465 SER A 256 REMARK 465 VAL A 257 REMARK 465 ASN A 258 REMARK 465 THR A 368 REMARK 465 VAL A 369 REMARK 465 SER A 370 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LEU B 89 REMARK 465 LYS B 90 REMARK 465 ASN B 91 REMARK 465 GLY B 92 REMARK 465 GLN B 93 REMARK 465 VAL B 94 REMARK 465 ASP B 95 REMARK 465 GLU B 204 REMARK 465 ALA B 205 REMARK 465 THR B 206 REMARK 465 ALA B 207 REMARK 465 THR B 208 REMARK 465 ASP B 209 REMARK 465 ALA B 210 REMARK 465 SER B 211 REMARK 465 LYS B 212 REMARK 465 GLU B 213 REMARK 465 SER B 214 REMARK 465 ASN B 215 REMARK 465 LYS B 216 REMARK 465 GLU B 217 REMARK 465 GLU B 218 REMARK 465 GLU B 219 REMARK 465 GLY B 220 REMARK 465 ASP B 221 REMARK 465 GLU B 222 REMARK 465 ASP B 223 REMARK 465 ASP B 224 REMARK 465 TRP B 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 573 O HOH A 692 2.15 REMARK 500 O HOH B 709 O HOH B 716 2.18 REMARK 500 O HOH B 537 O HOH B 800 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 115 170.51 175.48 REMARK 500 CYS A 234 -65.62 -96.71 REMARK 500 CYS B 115 170.97 175.60 REMARK 500 CYS B 234 -65.46 -96.21 REMARK 500 SER B 256 -179.10 -65.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 821 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 832 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 833 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 229 NE2 REMARK 620 2 ASP A 231 OD1 93.0 REMARK 620 3 HIS A 317 NE2 88.4 92.0 REMARK 620 4 HOH A 541 O 178.0 88.8 92.4 REMARK 620 5 HOH A 745 O 92.8 174.2 88.0 85.4 REMARK 620 6 HOH A 756 O 93.6 94.8 172.8 85.4 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 229 NE2 REMARK 620 2 ASP B 231 OD1 94.9 REMARK 620 3 HIS B 317 NE2 88.2 91.7 REMARK 620 4 HOH B 534 O 177.7 86.7 93.5 REMARK 620 5 HOH B 744 O 91.2 92.8 175.5 87.0 REMARK 620 6 HOH B 749 O 92.3 172.5 90.7 86.1 84.9 REMARK 620 N 1 2 3 4 5 DBREF 9HDM A 1 370 UNP Q7SHQ5 Q7SHQ5_NEUCR 1 370 DBREF 9HDM B 1 370 UNP Q7SHQ5 Q7SHQ5_NEUCR 1 370 SEQADV 9HDM MET A -19 UNP Q7SHQ5 INITIATING METHIONINE SEQADV 9HDM GLY A -18 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER A -17 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER A -16 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS A -15 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS A -14 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS A -13 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS A -12 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS A -11 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS A -10 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER A -9 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER A -8 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM GLY A -7 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM LEU A -6 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM VAL A -5 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM PRO A -4 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM ARG A -3 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM GLY A -2 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER A -1 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS A 0 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM MET B -19 UNP Q7SHQ5 INITIATING METHIONINE SEQADV 9HDM GLY B -18 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER B -17 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER B -16 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS B -15 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS B -14 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS B -13 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS B -12 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS B -11 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS B -10 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER B -9 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER B -8 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM GLY B -7 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM LEU B -6 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM VAL B -5 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM PRO B -4 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM ARG B -3 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM GLY B -2 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM SER B -1 UNP Q7SHQ5 EXPRESSION TAG SEQADV 9HDM HIS B 0 UNP Q7SHQ5 EXPRESSION TAG SEQRES 1 A 390 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 390 LEU VAL PRO ARG GLY SER HIS MET ALA PRO ILE ALA GLN SEQRES 3 A 390 ALA VAL THR VAL SER LEU ASN ASP LEU LYS ASN GLY THR SEQRES 4 A 390 VAL SER LEU GLU ALA LEU GLU GLU ALA PHE GLY PRO ASP SEQRES 5 A 390 SER LEU GLY ILE LEU VAL VAL LYS ASP VAL PRO ALA GLU SEQRES 6 A 390 PHE ALA GLU LEU ARG HIS ARG LEU LEU SER TYR SER SER SEQRES 7 A 390 TYR LEU GLY ASN LEU PRO LYS SER GLU LEU ASP ARG LEU SEQRES 8 A 390 GLU ASN GLU LYS ALA LYS TYR LEU THR GLY TRP SER LEU SEQRES 9 A 390 GLY LYS GLU THR LEU LYS ASN GLY GLN VAL ASP ASN LEU SEQRES 10 A 390 LYS GLY SER TYR TYR ALA ASN CYS ALA PHE TYR VAL ASP SEQRES 11 A 390 PRO SER LEU SER CYS ALA LYS PRO THR GLU GLU PHE ASN SEQRES 12 A 390 PRO ASP ASN PHE PRO GLU TYR LEU SER PRO ASN LEU TRP SEQRES 13 A 390 PRO GLN GLU SER THR LEU PRO GLY PHE LYS PRO THR PHE SEQRES 14 A 390 GLU ASP LEU CYS ARG LEU ILE ILE ASP VAL ALA VAL LEU SEQRES 15 A 390 VAL ALA ARG ALA CYS ASP ARG PHE ALA GLU LYS GLN ILE SEQRES 16 A 390 ALA GLY TYR PRO ALA GLY TYR LEU GLU GLY VAL VAL LYS SEQRES 17 A 390 THR SER THR THR THR LYS ALA ARG LEU LEU HIS TYR PHE SEQRES 18 A 390 PRO GLU GLU ALA THR ALA THR ASP ALA SER LYS GLU SER SEQRES 19 A 390 ASN LYS GLU GLU GLU GLY ASP GLU ASP ASP TRP CYS ALA SEQRES 20 A 390 THR HIS LEU ASP HIS GLY CYS LEU THR GLY LEU THR SER SEQRES 21 A 390 ALA MET PHE VAL ASP GLU ALA ALA THR PRO PRO VAL VAL SEQRES 22 A 390 ASN PRO SER VAL ASN GLY SER LEU PRO PRO LEU GLY GLU SEQRES 23 A 390 LEU PRO THR SER PRO ASP PRO LYS ALA GLY LEU TYR ILE SEQRES 24 A 390 LYS SER ARG THR GLY GLN THR VAL GLN VAL LYS ILE PRO SEQRES 25 A 390 ARG ASP CYS ILE ALA PHE GLN THR GLY GLU ALA LEU GLU SEQRES 26 A 390 ARG ILE THR GLY GLY LYS PHE LYS ALA VAL PRO HIS PHE SEQRES 27 A 390 VAL ARG GLY ALA ARG ALA GLU MET SER ALA GLY ARG ILE SEQRES 28 A 390 ALA ARG ASN THR LEU ALA VAL PHE THR GLN PRO ASN LEU SEQRES 29 A 390 GLY ASP GLU VAL ASP MET GLU GLN HIS ILE THR PHE GLY SEQRES 30 A 390 GLU PHE ALA ARG GLY ILE VAL ALA LYS ASN THR VAL SER SEQRES 1 B 390 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 390 LEU VAL PRO ARG GLY SER HIS MET ALA PRO ILE ALA GLN SEQRES 3 B 390 ALA VAL THR VAL SER LEU ASN ASP LEU LYS ASN GLY THR SEQRES 4 B 390 VAL SER LEU GLU ALA LEU GLU GLU ALA PHE GLY PRO ASP SEQRES 5 B 390 SER LEU GLY ILE LEU VAL VAL LYS ASP VAL PRO ALA GLU SEQRES 6 B 390 PHE ALA GLU LEU ARG HIS ARG LEU LEU SER TYR SER SER SEQRES 7 B 390 TYR LEU GLY ASN LEU PRO LYS SER GLU LEU ASP ARG LEU SEQRES 8 B 390 GLU ASN GLU LYS ALA LYS TYR LEU THR GLY TRP SER LEU SEQRES 9 B 390 GLY LYS GLU THR LEU LYS ASN GLY GLN VAL ASP ASN LEU SEQRES 10 B 390 LYS GLY SER TYR TYR ALA ASN CYS ALA PHE TYR VAL ASP SEQRES 11 B 390 PRO SER LEU SER CYS ALA LYS PRO THR GLU GLU PHE ASN SEQRES 12 B 390 PRO ASP ASN PHE PRO GLU TYR LEU SER PRO ASN LEU TRP SEQRES 13 B 390 PRO GLN GLU SER THR LEU PRO GLY PHE LYS PRO THR PHE SEQRES 14 B 390 GLU ASP LEU CYS ARG LEU ILE ILE ASP VAL ALA VAL LEU SEQRES 15 B 390 VAL ALA ARG ALA CYS ASP ARG PHE ALA GLU LYS GLN ILE SEQRES 16 B 390 ALA GLY TYR PRO ALA GLY TYR LEU GLU GLY VAL VAL LYS SEQRES 17 B 390 THR SER THR THR THR LYS ALA ARG LEU LEU HIS TYR PHE SEQRES 18 B 390 PRO GLU GLU ALA THR ALA THR ASP ALA SER LYS GLU SER SEQRES 19 B 390 ASN LYS GLU GLU GLU GLY ASP GLU ASP ASP TRP CYS ALA SEQRES 20 B 390 THR HIS LEU ASP HIS GLY CYS LEU THR GLY LEU THR SER SEQRES 21 B 390 ALA MET PHE VAL ASP GLU ALA ALA THR PRO PRO VAL VAL SEQRES 22 B 390 ASN PRO SER VAL ASN GLY SER LEU PRO PRO LEU GLY GLU SEQRES 23 B 390 LEU PRO THR SER PRO ASP PRO LYS ALA GLY LEU TYR ILE SEQRES 24 B 390 LYS SER ARG THR GLY GLN THR VAL GLN VAL LYS ILE PRO SEQRES 25 B 390 ARG ASP CYS ILE ALA PHE GLN THR GLY GLU ALA LEU GLU SEQRES 26 B 390 ARG ILE THR GLY GLY LYS PHE LYS ALA VAL PRO HIS PHE SEQRES 27 B 390 VAL ARG GLY ALA ARG ALA GLU MET SER ALA GLY ARG ILE SEQRES 28 B 390 ALA ARG ASN THR LEU ALA VAL PHE THR GLN PRO ASN LEU SEQRES 29 B 390 GLY ASP GLU VAL ASP MET GLU GLN HIS ILE THR PHE GLY SEQRES 30 B 390 GLU PHE ALA ARG GLY ILE VAL ALA LYS ASN THR VAL SER HET MN A 401 1 HET THM A 402 17 HET EDO A 403 4 HET MN B 401 1 HET CL B 402 1 HET THM B 403 17 HET BU3 B 404 6 HETNAM MN MANGANESE (II) ION HETNAM THM THYMIDINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 2(MN 2+) FORMUL 4 THM 2(C10 H14 N2 O5) FORMUL 5 EDO C2 H6 O2 FORMUL 7 CL CL 1- FORMUL 9 BU3 C4 H10 O2 FORMUL 10 HOH *654(H2 O) HELIX 1 AA1 LEU A 12 ASN A 17 1 6 HELIX 2 AA2 SER A 21 GLY A 30 1 10 HELIX 3 AA3 GLU A 45 ASN A 62 1 18 HELIX 4 AA4 PRO A 64 ARG A 70 1 7 HELIX 5 AA5 ALA A 106 VAL A 109 5 4 HELIX 6 AA6 PHE A 127 SER A 132 1 6 HELIX 7 AA7 GLY A 144 ILE A 175 1 32 HELIX 8 AA8 GLY A 181 THR A 189 1 9 HELIX 9 AA9 GLY A 301 THR A 308 1 8 HELIX 10 AB1 ARG A 323 ALA A 328 1 6 HELIX 11 AB2 PHE A 356 ARG A 361 1 6 HELIX 12 AB3 LEU B 12 ASN B 17 1 6 HELIX 13 AB4 SER B 21 GLY B 30 1 10 HELIX 14 AB5 GLU B 45 ASN B 62 1 18 HELIX 15 AB6 PRO B 64 ARG B 70 1 7 HELIX 16 AB7 ALA B 106 VAL B 109 5 4 HELIX 17 AB8 PHE B 127 SER B 132 1 6 HELIX 18 AB9 GLY B 144 ILE B 175 1 32 HELIX 19 AC1 GLY B 181 THR B 189 1 9 HELIX 20 AC2 GLY B 301 THR B 308 1 8 HELIX 21 AC3 ARG B 323 ALA B 328 1 6 HELIX 22 AC4 PHE B 356 ARG B 361 1 6 SHEET 1 AA1 8 VAL A 8 SER A 11 0 SHEET 2 AA1 8 ILE A 36 LYS A 40 1 O VAL A 38 N VAL A 8 SHEET 3 AA1 8 ILE A 296 THR A 300 -1 O ILE A 296 N VAL A 39 SHEET 4 AA1 8 LEU A 235 LEU A 238 -1 N THR A 236 O GLN A 299 SHEET 5 AA1 8 ILE A 331 THR A 340 -1 O VAL A 338 N GLY A 237 SHEET 6 AA1 8 LYS A 194 TYR A 200 -1 N TYR A 200 O ARG A 333 SHEET 7 AA1 8 ASN A 96 ASN A 104 -1 N ALA A 103 O ALA A 195 SHEET 8 AA1 8 GLY A 81 GLU A 87 -1 N GLY A 81 O TYR A 102 SHEET 1 AA2 6 VAL A 8 SER A 11 0 SHEET 2 AA2 6 ILE A 36 LYS A 40 1 O VAL A 38 N VAL A 8 SHEET 3 AA2 6 ILE A 296 THR A 300 -1 O ILE A 296 N VAL A 39 SHEET 4 AA2 6 LEU A 235 LEU A 238 -1 N THR A 236 O GLN A 299 SHEET 5 AA2 6 ILE A 331 THR A 340 -1 O VAL A 338 N GLY A 237 SHEET 6 AA2 6 MET A 242 ASP A 245 -1 N MET A 242 O ASN A 334 SHEET 1 AA3 3 THR A 286 VAL A 289 0 SHEET 2 AA3 3 GLY A 276 LYS A 280 -1 N ILE A 279 O VAL A 287 SHEET 3 AA3 3 HIS A 317 ARG A 320 -1 O PHE A 318 N TYR A 278 SHEET 1 AA4 2 GLU A 347 ASP A 349 0 SHEET 2 AA4 2 ILE A 354 THR A 355 -1 O ILE A 354 N VAL A 348 SHEET 1 AA5 8 VAL B 8 SER B 11 0 SHEET 2 AA5 8 ILE B 36 LYS B 40 1 O VAL B 38 N VAL B 8 SHEET 3 AA5 8 ILE B 296 THR B 300 -1 O ILE B 296 N VAL B 39 SHEET 4 AA5 8 LEU B 235 LEU B 238 -1 N THR B 236 O GLN B 299 SHEET 5 AA5 8 ILE B 331 THR B 340 -1 O VAL B 338 N GLY B 237 SHEET 6 AA5 8 LYS B 194 TYR B 200 -1 N TYR B 200 O ARG B 333 SHEET 7 AA5 8 LEU B 97 ASN B 104 -1 N GLY B 99 O HIS B 199 SHEET 8 AA5 8 GLY B 81 LYS B 86 -1 N GLY B 85 O LYS B 98 SHEET 1 AA6 6 VAL B 8 SER B 11 0 SHEET 2 AA6 6 ILE B 36 LYS B 40 1 O VAL B 38 N VAL B 8 SHEET 3 AA6 6 ILE B 296 THR B 300 -1 O ILE B 296 N VAL B 39 SHEET 4 AA6 6 LEU B 235 LEU B 238 -1 N THR B 236 O GLN B 299 SHEET 5 AA6 6 ILE B 331 THR B 340 -1 O VAL B 338 N GLY B 237 SHEET 6 AA6 6 MET B 242 ASP B 245 -1 N VAL B 244 O ALA B 332 SHEET 1 AA7 3 THR B 286 VAL B 289 0 SHEET 2 AA7 3 GLY B 276 LYS B 280 -1 N ILE B 279 O VAL B 287 SHEET 3 AA7 3 HIS B 317 ARG B 320 -1 O ARG B 320 N GLY B 276 SHEET 1 AA8 2 GLU B 347 ASP B 349 0 SHEET 2 AA8 2 ILE B 354 THR B 355 -1 O ILE B 354 N VAL B 348 LINK NE2 HIS A 229 MN MN A 401 1555 1555 2.23 LINK OD1 ASP A 231 MN MN A 401 1555 1555 2.22 LINK NE2 HIS A 317 MN MN A 401 1555 1555 2.24 LINK MN MN A 401 O HOH A 541 1555 1555 2.28 LINK MN MN A 401 O HOH A 745 1555 1555 2.27 LINK MN MN A 401 O HOH A 756 1555 1555 2.23 LINK NE2 HIS B 229 MN MN B 401 1555 1555 2.22 LINK OD1 ASP B 231 MN MN B 401 1555 1555 2.24 LINK NE2 HIS B 317 MN MN B 401 1555 1555 2.25 LINK MN MN B 401 O HOH B 534 1555 1555 2.24 LINK MN MN B 401 O HOH B 744 1555 1555 2.21 LINK MN MN B 401 O HOH B 749 1555 1555 2.24 CRYST1 57.983 108.293 115.732 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008641 0.00000