HEADER LIGASE 19-NOV-24 9HGH TITLE MYD88 PEPTIDE_1 BOUND TO SPOP MATH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECKLE TYPE BTB/POZ PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MYELOID DIFFERENTIATION PRIMARY RESPONSE PROTEIN MYD88; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS UBIQUITINATION, LIGASE, IMMUNE SIGNALLING, DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR L.MAKHLOUF,E.ZEQIRAJ REVDAT 2 23-JUL-25 9HGH 1 JRNL REVDAT 1 23-APR-25 9HGH 0 JRNL AUTH L.MAKHLOUF,M.MISHRA,H.MAKHLOUF,I.MANFIELD,L.BUSINO,E.ZEQIRAJ JRNL TITL SEQUENCE RULES FOR A LONG SPOP-BINDING DEGRON REQUIRED FOR JRNL TITL 2 PROTEIN UBIQUITYLATION. JRNL REF BIOCHEM.J. V. 482 583 2025 JRNL REFN ESSN 1470-8728 JRNL PMID 40178506 JRNL DOI 10.1042/BCJ20253041 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4400 - 3.0200 0.99 2849 138 0.1639 0.2102 REMARK 3 2 3.0200 - 2.3900 1.00 2707 153 0.1807 0.2386 REMARK 3 3 2.3900 - 2.0900 1.00 2709 123 0.1708 0.2508 REMARK 3 4 2.0900 - 1.9000 0.99 2639 133 0.1949 0.2722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.194 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.409 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1243 REMARK 3 ANGLE : 1.132 1670 REMARK 3 CHIRALITY : 0.061 184 REMARK 3 PLANARITY : 0.010 209 REMARK 3 DIHEDRAL : 6.148 163 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2012 9.1369 0.6371 REMARK 3 T TENSOR REMARK 3 T11: 0.0796 T22: 0.1175 REMARK 3 T33: 0.1188 T12: 0.0137 REMARK 3 T13: -0.0112 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 6.2143 L22: 1.5264 REMARK 3 L33: 1.8935 L12: 0.0277 REMARK 3 L13: -1.3164 L23: 0.4905 REMARK 3 S TENSOR REMARK 3 S11: -0.2690 S12: 0.3633 S13: 0.4695 REMARK 3 S21: 0.1009 S22: 0.2290 S23: -0.0515 REMARK 3 S31: 0.0480 S32: 0.0994 S33: 0.0294 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5884 -1.0951 3.0055 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.2279 REMARK 3 T33: 0.2556 T12: 0.0122 REMARK 3 T13: -0.0458 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.1021 L22: 2.9194 REMARK 3 L33: 2.1003 L12: -2.0679 REMARK 3 L13: -0.1961 L23: 1.2664 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: 0.2447 S13: -0.4697 REMARK 3 S21: -0.1031 S22: 0.1130 S23: 0.1072 REMARK 3 S31: 0.5709 S32: 0.0478 S33: 0.1326 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1799 4.1410 -5.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.1120 T22: 0.1095 REMARK 3 T33: 0.0999 T12: 0.0160 REMARK 3 T13: -0.0064 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.7030 L22: 2.2328 REMARK 3 L33: 2.9364 L12: -0.0548 REMARK 3 L13: -0.9905 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.1839 S13: 0.3510 REMARK 3 S21: -0.2320 S22: 0.0918 S23: 0.0991 REMARK 3 S31: -0.0615 S32: -0.0701 S33: -0.0487 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1218 -10.3206 7.7533 REMARK 3 T TENSOR REMARK 3 T11: 0.2306 T22: 0.1901 REMARK 3 T33: 0.1803 T12: -0.0447 REMARK 3 T13: 0.0466 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.0425 L22: 4.9199 REMARK 3 L33: 3.7334 L12: 0.6385 REMARK 3 L13: -0.0293 L23: 1.3920 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: 0.0995 S13: -0.2971 REMARK 3 S21: 0.3115 S22: -0.0088 S23: 0.3914 REMARK 3 S31: 0.6299 S32: -0.0425 S33: 0.0491 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1119 -1.0790 -6.4492 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.1259 REMARK 3 T33: 0.1140 T12: -0.0184 REMARK 3 T13: 0.0001 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.5901 L22: 1.2560 REMARK 3 L33: 4.1220 L12: -0.3852 REMARK 3 L13: -1.8548 L23: 0.1797 REMARK 3 S TENSOR REMARK 3 S11: 0.1164 S12: 0.0943 S13: -0.0474 REMARK 3 S21: -0.2442 S22: 0.0537 S23: -0.1355 REMARK 3 S31: 0.2286 S32: 0.1547 S33: -0.0516 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0960 2.2128 4.0595 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.1058 REMARK 3 T33: 0.0944 T12: 0.0136 REMARK 3 T13: -0.0084 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 4.3847 L22: 1.3494 REMARK 3 L33: 3.3720 L12: -0.9777 REMARK 3 L13: -2.8275 L23: 1.0563 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: -0.3217 S13: 0.1816 REMARK 3 S21: 0.0728 S22: 0.1612 S23: -0.1999 REMARK 3 S31: 0.2223 S32: 0.4065 S33: -0.1659 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4349 9.8296 15.0165 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.1980 REMARK 3 T33: 0.2237 T12: 0.0425 REMARK 3 T13: -0.0417 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 4.3784 L22: 6.1108 REMARK 3 L33: 1.4735 L12: -3.1113 REMARK 3 L13: 1.0340 L23: 0.0728 REMARK 3 S TENSOR REMARK 3 S11: -0.2393 S12: -0.3796 S13: 0.8469 REMARK 3 S21: 0.4108 S22: -0.0460 S23: 0.0974 REMARK 3 S31: -0.2901 S32: -0.1644 S33: 0.0395 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7903 -4.3121 3.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.0684 REMARK 3 T33: 0.1009 T12: 0.0118 REMARK 3 T13: 0.0041 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.6649 L22: 1.5636 REMARK 3 L33: 2.4058 L12: 0.0351 REMARK 3 L13: -0.3773 L23: -0.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.1690 S13: -0.1310 REMARK 3 S21: 0.0697 S22: 0.0334 S23: -0.0643 REMARK 3 S31: 0.2424 S32: 0.2295 S33: 0.0095 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7792 0.6977 16.8152 REMARK 3 T TENSOR REMARK 3 T11: 0.2955 T22: 0.2837 REMARK 3 T33: 0.1977 T12: -0.0316 REMARK 3 T13: 0.0183 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.8910 L22: 5.2208 REMARK 3 L33: 6.7679 L12: 1.1735 REMARK 3 L13: 0.5593 L23: 3.3950 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: -0.1207 S13: -0.3179 REMARK 3 S21: 0.1515 S22: 0.0107 S23: 0.6418 REMARK 3 S31: 0.0151 S32: -0.4325 S33: 0.0889 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0522 7.5483 6.2075 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.0846 REMARK 3 T33: 0.0999 T12: -0.0213 REMARK 3 T13: -0.0107 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.2009 L22: 1.3675 REMARK 3 L33: 1.8245 L12: -0.3345 REMARK 3 L13: -1.3910 L23: 0.6212 REMARK 3 S TENSOR REMARK 3 S11: 0.1444 S12: -0.1099 S13: 0.4701 REMARK 3 S21: 0.0411 S22: -0.0221 S23: 0.0598 REMARK 3 S31: -0.0919 S32: -0.0703 S33: 0.0121 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1643 -9.2850 9.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.2414 T22: 0.1872 REMARK 3 T33: 0.1454 T12: -0.0606 REMARK 3 T13: -0.0415 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.5652 L22: 2.0149 REMARK 3 L33: 1.5073 L12: -0.2829 REMARK 3 L13: -0.3689 L23: 0.3514 REMARK 3 S TENSOR REMARK 3 S11: -0.1658 S12: -0.0962 S13: -0.3087 REMARK 3 S21: 0.0013 S22: 0.1076 S23: 0.0035 REMARK 3 S31: 0.5610 S32: -0.5941 S33: 0.0203 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9HGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1292141590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 33.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% W/V PEG 1000, 12.5% W/V PEG REMARK 280 3350, 12.5% V/V MPD, 0.03 M DIETHYLENEGLYCOL, 0.03 M REMARK 280 TRIETHYLENEGLYCOL, 0.03 M TETRAETHYLENEGLYCOL, 0.03 M REMARK 280 PENTAETHYLENEGLYCOL, 0.1 M BICINE/TRIZMA BASE PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 166 REMARK 465 ALA B 125 REMARK 465 THR B 141 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 GLN A 165 CG CD OE1 NE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 ARG B 140 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 93 115.85 -161.88 REMARK 500 GLN A 120 -53.68 76.21 REMARK 500 LYS A 135 65.09 -117.14 REMARK 500 SER B 137 87.55 -46.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 9HGH A 28 166 UNP D6RDG8 D6RDG8_HUMAN 28 166 DBREF 9HGH B 125 141 UNP Q99836 MYD88_HUMAN 125 141 SEQADV 9HGH ALA A 27 UNP D6RDG8 EXPRESSION TAG SEQRES 1 A 140 ALA LYS VAL VAL LYS PHE SER TYR MET TRP THR ILE ASN SEQRES 2 A 140 ASN PHE SER PHE CYS ARG GLU GLU MET GLY GLU VAL ILE SEQRES 3 A 140 LYS SER SER THR PHE SER SER GLY ALA ASN ASP LYS LEU SEQRES 4 A 140 LYS TRP CYS LEU ARG VAL ASN PRO LYS GLY LEU ASP GLU SEQRES 5 A 140 GLU SER LYS ASP TYR LEU SER LEU TYR LEU LEU LEU VAL SEQRES 6 A 140 SER CYS PRO LYS SER GLU VAL ARG ALA LYS PHE LYS PHE SEQRES 7 A 140 SER ILE LEU ASN ALA LYS GLY GLU GLU THR LYS ALA MET SEQRES 8 A 140 GLU SER GLN ARG ALA TYR ARG PHE VAL GLN GLY LYS ASP SEQRES 9 A 140 TRP GLY PHE LYS LYS PHE ILE ARG ARG ASP PHE LEU LEU SEQRES 10 A 140 ASP GLU ALA ASN GLY LEU LEU PRO ASP ASP LYS LEU THR SEQRES 11 A 140 LEU PHE CYS GLU VAL SER VAL VAL GLN ASP SEQRES 1 B 17 ALA GLU LYS PRO LEU GLN VAL ALA ALA VAL ASP SER SER SEQRES 2 B 17 VAL PRO ARG THR FORMUL 3 HOH *121(H2 O) HELIX 1 AA1 ASN A 40 CYS A 44 5 5 HELIX 2 AA2 ASP A 77 LYS A 81 5 5 HELIX 3 AA3 ARG A 139 ASP A 144 1 6 HELIX 4 AA4 GLU A 145 GLY A 148 5 4 HELIX 5 AA5 LEU A 150 LYS A 154 5 5 SHEET 1 AA1 4 VAL A 29 ILE A 38 0 SHEET 2 AA1 4 LEU A 155 VAL A 164 -1 O LEU A 155 N ILE A 38 SHEET 3 AA1 4 VAL A 98 LEU A 107 -1 N ARG A 99 O VAL A 164 SHEET 4 AA1 4 GLU A 113 GLU A 118 -1 O THR A 114 N ILE A 106 SHEET 1 AA2 4 VAL A 29 ILE A 38 0 SHEET 2 AA2 4 LEU A 155 VAL A 164 -1 O LEU A 155 N ILE A 38 SHEET 3 AA2 4 VAL A 98 LEU A 107 -1 N ARG A 99 O VAL A 164 SHEET 4 AA2 4 TYR A 123 PHE A 125 -1 O PHE A 125 N VAL A 98 SHEET 1 AA3 4 ILE A 52 LYS A 53 0 SHEET 2 AA3 4 LYS A 66 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 AA3 4 TYR A 83 SER A 92 -1 O LEU A 89 N CYS A 68 SHEET 4 AA3 4 ASP A 130 ARG A 138 -1 O TRP A 131 N LEU A 88 CRYST1 40.000 57.290 60.970 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016402 0.00000 MASTER 405 0 0 5 12 0 0 6 1340 2 0 13 END