HEADER LYASE 18-DEC-24 9HRH TITLE HUMAN HOLO AROMATIC L-AMINO ACID DECARBOXYLASE (AADC) R347Q VARIANT TITLE 2 NATIVE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC-L-AMINO-ACID DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DOPA DECARBOXYLASE; COMPND 5 EC: 4.1.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDC, HCG_1811384, TCAG7.584; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DOPA DECARBOXYLASE, DDC, AROMATIC L-AMINO ACID DECARBOXYLASE, AADC, KEYWDS 2 R347Q VARIANT, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PERDUCA,G.BISELLO,M.BERTOLDI REVDAT 2 01-OCT-25 9HRH 1 JRNL REVDAT 1 14-MAY-25 9HRH 0 JRNL AUTH C.A.CARMONA-CARMONA,G.BISELLO,R.FRANCHINI,G.LUNARDI, JRNL AUTH 2 R.GALAVOTTI,M.PERDUCA,R.P.RIBEIRO,B.D.BELVISO,A.GIORGETTI, JRNL AUTH 3 R.CALIANDRO,P.M.LIEVENS,M.BERTOLDI JRNL TITL THE CRISPR-CAS9 KNOCKOUT DDC SH-SY5Y IN VITRO MODEL FOR AADC JRNL TITL 2 DEFICIENCY PROVIDES INSIGHT INTO THE PATHOGENICITY OF R347Q JRNL TITL 3 AND L353P VARIANTS: A CROSS-SECTIONAL STRUCTURAL AND JRNL TITL 4 FUNCTIONAL ANALYSIS. JRNL REF FEBS J. V. 292 4833 2025 JRNL REFN ISSN 1742-464X JRNL PMID 40318155 JRNL DOI 10.1111/FEBS.70120 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 82221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.6400 - 5.2200 1.00 3018 151 0.1942 0.1853 REMARK 3 2 5.2200 - 4.1500 1.00 2820 139 0.1612 0.1854 REMARK 3 3 4.1400 - 3.6200 1.00 2784 143 0.1719 0.1431 REMARK 3 4 3.6200 - 3.2900 1.00 2742 156 0.1840 0.1933 REMARK 3 5 3.2900 - 3.0500 1.00 2714 148 0.1895 0.1966 REMARK 3 6 3.0500 - 2.8700 1.00 2743 136 0.1869 0.1751 REMARK 3 7 2.8700 - 2.7300 1.00 2700 134 0.1887 0.1975 REMARK 3 8 2.7300 - 2.6100 1.00 2701 142 0.1803 0.1967 REMARK 3 9 2.6100 - 2.5100 1.00 2704 128 0.1840 0.2087 REMARK 3 10 2.5100 - 2.4200 1.00 2694 155 0.1897 0.2018 REMARK 3 11 2.4200 - 2.3500 1.00 2658 157 0.1867 0.2243 REMARK 3 12 2.3500 - 2.2800 1.00 2684 133 0.1927 0.2338 REMARK 3 13 2.2800 - 2.2200 1.00 2674 154 0.1899 0.2292 REMARK 3 14 2.2200 - 2.1700 1.00 2673 149 0.1979 0.1854 REMARK 3 15 2.1700 - 2.1200 1.00 2666 135 0.2078 0.1983 REMARK 3 16 2.1200 - 2.0700 1.00 2636 156 0.2041 0.2266 REMARK 3 17 2.0700 - 2.0300 1.00 2667 138 0.2342 0.2620 REMARK 3 18 2.0300 - 1.9900 1.00 2660 152 0.2304 0.2296 REMARK 3 19 1.9900 - 1.9600 1.00 2636 152 0.2284 0.2254 REMARK 3 20 1.9600 - 1.9200 1.00 2689 120 0.2180 0.2027 REMARK 3 21 1.9200 - 1.8900 1.00 2650 143 0.2369 0.2293 REMARK 3 22 1.8900 - 1.8600 1.00 2661 146 0.2330 0.2347 REMARK 3 23 1.8600 - 1.8400 1.00 2642 126 0.2459 0.2359 REMARK 3 24 1.8400 - 1.8100 1.00 2642 141 0.2550 0.2875 REMARK 3 25 1.8100 - 1.7900 1.00 2662 122 0.2822 0.2898 REMARK 3 26 1.7900 - 1.7600 1.00 2641 141 0.2819 0.2991 REMARK 3 27 1.7600 - 1.7400 1.00 2654 134 0.3231 0.3473 REMARK 3 28 1.7400 - 1.7200 1.00 2653 132 0.3563 0.3582 REMARK 3 29 1.7200 - 1.7000 1.00 2628 162 0.3808 0.4145 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.209 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.745 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3785 REMARK 3 ANGLE : 0.631 5118 REMARK 3 CHIRALITY : 0.043 555 REMARK 3 PLANARITY : 0.005 654 REMARK 3 DIHEDRAL : 6.669 527 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:714) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8960 -33.6393 -9.2133 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.1164 REMARK 3 T33: 0.1220 T12: -0.0097 REMARK 3 T13: 0.0104 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4991 L22: 0.4463 REMARK 3 L33: 0.5032 L12: -0.0352 REMARK 3 L13: 0.0346 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: -0.0254 S13: -0.0758 REMARK 3 S21: 0.0559 S22: -0.0085 S23: -0.0343 REMARK 3 S31: 0.0703 S32: -0.0077 S33: 0.0331 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9HRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1292142963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 72.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 40% PEG 200, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.95067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 145.90133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.42600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 182.37667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.47533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.95067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 145.90133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 182.37667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 109.42600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.47533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.47533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 921 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1022 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1042 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1050 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1051 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 323 REMARK 465 GLY A 324 REMARK 465 ALA A 325 REMARK 465 PHE A 326 REMARK 465 ARG A 327 REMARK 465 LEU A 328 REMARK 465 ASP A 329 REMARK 465 PRO A 330 REMARK 465 THR A 331 REMARK 465 TYR A 332 REMARK 465 LEU A 333 REMARK 465 LYS A 334 REMARK 465 HIS A 335 REMARK 465 SER A 336 REMARK 465 HIS A 337 REMARK 465 GLN A 338 REMARK 465 ASP A 339 REMARK 465 SER A 340 REMARK 465 GLY A 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 149 O HOH A 701 2.00 REMARK 500 O HOH A 902 O HOH A 910 2.12 REMARK 500 O HOH A 818 O HOH A 1005 2.16 REMARK 500 O HOH A 789 O HOH A 926 2.18 REMARK 500 O HOH A 1005 O HOH A 1016 2.19 REMARK 500 OD1 ASP A 55 O HOH A 702 2.19 REMARK 500 O HOH A 739 O HOH A 820 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 902 O HOH A 902 10554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 79 -114.58 50.68 REMARK 500 SER A 108 97.52 174.14 REMARK 500 LLP A 303 -64.49 -93.48 REMARK 500 CYS A 311 101.02 -164.13 REMARK 500 LEU A 406 -143.87 -117.33 REMARK 500 ARG A 441 -123.23 57.61 REMARK 500 CYS A 451 -56.92 -122.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 9HRH A 1 480 UNP Q53Y41 Q53Y41_HUMAN 1 480 SEQADV 9HRH GLN A 347 UNP Q53Y41 ARG 347 ENGINEERED MUTATION SEQRES 1 A 480 MET ASN ALA SER GLU PHE ARG ARG ARG GLY LYS GLU MET SEQRES 2 A 480 VAL ASP TYR VAL ALA ASN TYR MET GLU GLY ILE GLU GLY SEQRES 3 A 480 ARG GLN VAL TYR PRO ASP VAL GLU PRO GLY TYR LEU ARG SEQRES 4 A 480 PRO LEU ILE PRO ALA ALA ALA PRO GLN GLU PRO ASP THR SEQRES 5 A 480 PHE GLU ASP ILE ILE ASN ASP VAL GLU LYS ILE ILE MET SEQRES 6 A 480 PRO GLY VAL THR HIS TRP HIS SER PRO TYR PHE PHE ALA SEQRES 7 A 480 TYR PHE PRO THR ALA SER SER TYR PRO ALA MET LEU ALA SEQRES 8 A 480 ASP MET LEU CYS GLY ALA ILE GLY CYS ILE GLY PHE SER SEQRES 9 A 480 TRP ALA ALA SER PRO ALA CYS THR GLU LEU GLU THR VAL SEQRES 10 A 480 MET MET ASP TRP LEU GLY LYS MET LEU GLU LEU PRO LYS SEQRES 11 A 480 ALA PHE LEU ASN GLU LYS ALA GLY GLU GLY GLY GLY VAL SEQRES 12 A 480 ILE GLN GLY SER ALA SER GLU ALA THR LEU VAL ALA LEU SEQRES 13 A 480 LEU ALA ALA ARG THR LYS VAL ILE HIS ARG LEU GLN ALA SEQRES 14 A 480 ALA SER PRO GLU LEU THR GLN ALA ALA ILE MET GLU LYS SEQRES 15 A 480 LEU VAL ALA TYR SER SER ASP GLN ALA HIS SER SER VAL SEQRES 16 A 480 GLU ARG ALA GLY LEU ILE GLY GLY VAL LYS LEU LYS ALA SEQRES 17 A 480 ILE PRO SER ASP GLY ASN PHE ALA MET ARG ALA SER ALA SEQRES 18 A 480 LEU GLN GLU ALA LEU GLU ARG ASP LYS ALA ALA GLY LEU SEQRES 19 A 480 ILE PRO PHE PHE MET VAL ALA THR LEU GLY THR THR THR SEQRES 20 A 480 CYS CYS SER PHE ASP ASN LEU LEU GLU VAL GLY PRO ILE SEQRES 21 A 480 CYS ASN LYS GLU ASP ILE TRP LEU HIS VAL ASP ALA ALA SEQRES 22 A 480 TYR ALA GLY SER ALA PHE ILE CYS PRO GLU PHE ARG HIS SEQRES 23 A 480 LEU LEU ASN GLY VAL GLU PHE ALA ASP SER PHE ASN PHE SEQRES 24 A 480 ASN PRO HIS LLP TRP LEU LEU VAL ASN PHE ASP CYS SER SEQRES 25 A 480 ALA MET TRP VAL LYS LYS ARG THR ASP LEU THR GLY ALA SEQRES 26 A 480 PHE ARG LEU ASP PRO THR TYR LEU LYS HIS SER HIS GLN SEQRES 27 A 480 ASP SER GLY LEU ILE THR ASP TYR GLN HIS TRP GLN ILE SEQRES 28 A 480 PRO LEU GLY ARG ARG PHE ARG SER LEU LYS MET TRP PHE SEQRES 29 A 480 VAL PHE ARG MET TYR GLY VAL LYS GLY LEU GLN ALA TYR SEQRES 30 A 480 ILE ARG LYS HIS VAL GLN LEU SER HIS GLU PHE GLU SER SEQRES 31 A 480 LEU VAL ARG GLN ASP PRO ARG PHE GLU ILE CYS VAL GLU SEQRES 32 A 480 VAL ILE LEU GLY LEU VAL CYS PHE ARG LEU LYS GLY SER SEQRES 33 A 480 ASN LYS VAL ASN GLU ALA LEU LEU GLN ARG ILE ASN SER SEQRES 34 A 480 ALA LYS LYS ILE HIS LEU VAL PRO CYS HIS LEU ARG ASP SEQRES 35 A 480 LYS PHE VAL LEU ARG PHE ALA ILE CYS SER ARG THR VAL SEQRES 36 A 480 GLU SER ALA HIS VAL GLN ARG ALA TRP GLU HIS ILE LYS SEQRES 37 A 480 GLU LEU ALA ALA ASP VAL LEU ARG ALA GLU ARG GLU MODRES 9HRH LLP A 303 LYS MODIFIED RESIDUE HET LLP A 303 24 HET PG4 A 601 13 HET PG4 A 602 13 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 PG4 2(C8 H18 O5) FORMUL 4 HOH *353(H2 O) HELIX 1 AA1 ASN A 2 GLY A 23 1 22 HELIX 2 AA2 ILE A 24 ARG A 27 5 4 HELIX 3 AA3 LEU A 38 ILE A 42 5 5 HELIX 4 AA4 THR A 52 ILE A 63 1 12 HELIX 5 AA5 ILE A 64 VAL A 68 5 5 HELIX 6 AA6 SER A 85 GLY A 99 1 15 HELIX 7 AA7 SER A 108 LEU A 126 1 19 HELIX 8 AA8 PRO A 129 LEU A 133 5 5 HELIX 9 AA9 SER A 147 SER A 171 1 25 HELIX 10 AB1 THR A 175 GLU A 181 1 7 HELIX 11 AB2 HIS A 192 GLY A 203 1 12 HELIX 12 AB3 ARG A 218 ALA A 232 1 15 HELIX 13 AB4 ASN A 253 ASP A 265 1 13 HELIX 14 AB5 TYR A 274 CYS A 281 5 8 HELIX 15 AB6 PHE A 284 ASN A 289 5 6 HELIX 16 AB7 GLY A 290 ALA A 294 5 5 HELIX 17 AB8 ASN A 300 LEU A 305 1 6 HELIX 18 AB9 LYS A 318 LEU A 322 5 5 HELIX 19 AC1 ARG A 358 ARG A 393 1 36 HELIX 20 AC2 SER A 416 LYS A 431 1 16 HELIX 21 AC3 GLU A 456 GLU A 480 1 25 SHEET 1 AA1 7 GLY A 141 GLN A 145 0 SHEET 2 AA1 7 SER A 312 VAL A 316 -1 O SER A 312 N GLN A 145 SHEET 3 AA1 7 SER A 296 PHE A 299 -1 N PHE A 297 O TRP A 315 SHEET 4 AA1 7 TRP A 267 ASP A 271 1 N VAL A 270 O SER A 296 SHEET 5 AA1 7 ILE A 235 THR A 242 1 N MET A 239 O HIS A 269 SHEET 6 AA1 7 LEU A 183 SER A 188 1 N TYR A 186 O VAL A 240 SHEET 7 AA1 7 LYS A 205 ILE A 209 1 O ILE A 209 N SER A 187 SHEET 1 AA2 4 PHE A 398 ILE A 400 0 SHEET 2 AA2 4 LEU A 408 LEU A 413 -1 O ARG A 412 N GLU A 399 SHEET 3 AA2 4 LYS A 443 ALA A 449 -1 O LEU A 446 N PHE A 411 SHEET 4 AA2 4 PRO A 437 LEU A 440 -1 N CYS A 438 O VAL A 445 LINK C HIS A 302 N LLP A 303 1555 1555 1.33 LINK C LLP A 303 N TRP A 304 1555 1555 1.33 CISPEP 1 PHE A 309 ASP A 310 0 6.50 CRYST1 107.270 107.270 218.852 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009322 0.005382 0.000000 0.00000 SCALE2 0.000000 0.010764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004569 0.00000 CONECT 2313 2336 CONECT 2321 2322 2329 CONECT 2322 2321 2323 2324 CONECT 2323 2322 CONECT 2324 2322 2325 2326 CONECT 2325 2324 CONECT 2326 2324 2327 2328 CONECT 2327 2326 2342 CONECT 2328 2326 2329 2330 CONECT 2329 2321 2328 CONECT 2330 2328 2331 CONECT 2331 2330 2332 CONECT 2332 2331 2333 2334 2335 CONECT 2333 2332 CONECT 2334 2332 CONECT 2335 2332 CONECT 2336 2313 2337 CONECT 2337 2336 2338 2343 CONECT 2338 2337 2339 CONECT 2339 2338 2340 CONECT 2340 2339 2341 CONECT 2341 2340 2342 CONECT 2342 2327 2341 CONECT 2343 2337 2344 2345 CONECT 2344 2343 CONECT 2345 2343 CONECT 3672 3673 CONECT 3673 3672 3674 CONECT 3674 3673 3675 CONECT 3675 3674 3676 CONECT 3676 3675 3677 CONECT 3677 3676 3678 CONECT 3678 3677 3679 CONECT 3679 3678 3680 CONECT 3680 3679 3681 CONECT 3681 3680 3682 CONECT 3682 3681 3683 CONECT 3683 3682 3684 CONECT 3684 3683 CONECT 3685 3686 CONECT 3686 3685 3687 CONECT 3687 3686 3688 CONECT 3688 3687 3689 CONECT 3689 3688 3690 CONECT 3690 3689 3691 CONECT 3691 3690 3692 CONECT 3692 3691 3693 CONECT 3693 3692 3694 CONECT 3694 3693 3695 CONECT 3695 3694 3696 CONECT 3696 3695 3697 CONECT 3697 3696 MASTER 367 0 3 21 11 0 0 6 4032 1 52 37 END