HEADER HYDROLASE 15-JAN-25 9I0S TITLE STRUCTURE OF RECQL-ADP COMPLEX FROM BOS TAURUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.4.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: DOMESTIC CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: RECQL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS HELICASE DNA G-QUADRUPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.Y.SONG,N.N.LIU,X.AI,S.RETY,X.G.XI REVDAT 1 01-OCT-25 9I0S 0 JRNL AUTH Z.Y.SONG,X.ZHANG,X.AI,L.Y.HUANG,X.M.HOU,P.FOSSE,N.N.LIU, JRNL AUTH 2 O.MAUFFRET,S.RETY,X.G.XI JRNL TITL STRUCTURAL MECHANISM OF RECQ1 HELICASE IN UNFOLDING JRNL TITL 2 G-QUADRUPLEXES COMPARED WITH DUPLEX DNA. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 40966504 JRNL DOI 10.1093/NAR/GKAF877 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.4800 - 6.3000 1.00 2982 183 0.1796 0.1996 REMARK 3 2 6.3000 - 5.0000 1.00 2869 133 0.2135 0.2251 REMARK 3 3 5.0000 - 4.3700 1.00 2855 148 0.1899 0.2234 REMARK 3 4 4.3700 - 3.9700 1.00 2792 131 0.2030 0.2208 REMARK 3 5 3.9700 - 3.6900 1.00 2810 148 0.2290 0.2784 REMARK 3 6 3.6900 - 3.4700 1.00 2807 137 0.2595 0.2855 REMARK 3 7 3.4700 - 3.3000 1.00 2778 152 0.2701 0.2993 REMARK 3 8 3.3000 - 3.1500 1.00 2775 145 0.2856 0.3474 REMARK 3 9 3.1500 - 3.0300 1.00 2750 159 0.3019 0.3165 REMARK 3 10 3.0300 - 2.9300 1.00 2773 130 0.3337 0.4009 REMARK 3 11 2.9300 - 2.8300 1.00 2758 155 0.3488 0.4060 REMARK 3 12 2.8300 - 2.7500 1.00 2746 117 0.3253 0.3225 REMARK 3 13 2.7500 - 2.6800 1.00 2820 133 0.3134 0.3626 REMARK 3 14 2.6800 - 2.6200 1.00 2715 137 0.3218 0.3862 REMARK 3 15 2.6200 - 2.5600 1.00 2780 135 0.3312 0.3529 REMARK 3 16 2.5600 - 2.5000 1.00 2730 128 0.3341 0.3272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.348 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.791 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8708 REMARK 3 ANGLE : 0.770 11754 REMARK 3 CHIRALITY : 0.050 1296 REMARK 3 PLANARITY : 0.005 1480 REMARK 3 DIHEDRAL : 17.821 3303 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4360 -20.4916 11.1231 REMARK 3 T TENSOR REMARK 3 T11: 0.7259 T22: 0.4446 REMARK 3 T33: 0.3337 T12: 0.0003 REMARK 3 T13: -0.0537 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 1.5265 L22: 3.7506 REMARK 3 L33: 6.7094 L12: -0.2441 REMARK 3 L13: -0.2838 L23: -2.5359 REMARK 3 S TENSOR REMARK 3 S11: 0.0650 S12: 0.0955 S13: 0.0866 REMARK 3 S21: -0.0691 S22: -0.1681 S23: -0.0517 REMARK 3 S31: -0.8122 S32: 0.0299 S33: 0.0877 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6902 -27.4084 43.1896 REMARK 3 T TENSOR REMARK 3 T11: 0.3531 T22: 0.3928 REMARK 3 T33: 0.4100 T12: 0.0815 REMARK 3 T13: 0.0699 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.1894 L22: 1.7205 REMARK 3 L33: 3.5366 L12: 0.1156 REMARK 3 L13: 0.2441 L23: 0.4769 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.2130 S13: 0.0720 REMARK 3 S21: -0.2488 S22: -0.0057 S23: -0.2702 REMARK 3 S31: 0.1827 S32: 0.4113 S33: -0.0418 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1953 11.4455 41.0643 REMARK 3 T TENSOR REMARK 3 T11: 0.3329 T22: 0.3865 REMARK 3 T33: 0.4848 T12: -0.0779 REMARK 3 T13: 0.0297 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.6129 L22: 2.8264 REMARK 3 L33: 0.9730 L12: -2.2880 REMARK 3 L13: -0.0146 L23: -0.4881 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.0200 S13: 0.1525 REMARK 3 S21: -0.0985 S22: -0.1168 S23: -0.2721 REMARK 3 S31: 0.0180 S32: 0.0378 S33: -0.1232 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 286 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2966 17.4849 11.9494 REMARK 3 T TENSOR REMARK 3 T11: 0.9188 T22: 0.4756 REMARK 3 T33: 0.4136 T12: 0.1349 REMARK 3 T13: 0.1016 T23: 0.0915 REMARK 3 L TENSOR REMARK 3 L11: 1.6387 L22: 4.0856 REMARK 3 L33: 3.0040 L12: -0.3572 REMARK 3 L13: 0.4813 L23: -0.1435 REMARK 3 S TENSOR REMARK 3 S11: 0.3646 S12: 0.4028 S13: 0.0311 REMARK 3 S21: -1.3676 S22: -0.2665 S23: -0.2010 REMARK 3 S31: 0.4170 S32: 0.1083 S33: -0.2380 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 63 through 69 or REMARK 3 resid 71 through 79 or resid 81 through REMARK 3 152 or resid 154 through 179 or resid 181 REMARK 3 through 182 or resid 184 through 198 or REMARK 3 resid 200 through 205 or resid 207 REMARK 3 through 259 or resid 261 through 266 or REMARK 3 resid 268 through 271 or resid 274 REMARK 3 through 280 or resid 282 through 301 or REMARK 3 resid 303 through 305 or resid 307 REMARK 3 through 312 or resid 314 through 323 or REMARK 3 resid 325 through 354 or resid 356 REMARK 3 through 410 or resid 412 through 437 or REMARK 3 resid 439 through 459 or resid 462 REMARK 3 through 463 or resid 470 through 472 or REMARK 3 resid 474 through 479 or resid 482 REMARK 3 through 485 or resid 487 through 493 or REMARK 3 resid 495 through 497 or resid 499 REMARK 3 through 508 or resid 510 through 525 or REMARK 3 resid 531 through 591 or resid 1001 REMARK 3 through 1594)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 63 through 69 or REMARK 3 resid 71 through 79 or resid 81 through REMARK 3 152 or resid 154 through 179 or resid 181 REMARK 3 through 182 or resid 184 through 198 or REMARK 3 resid 200 through 205 or resid 207 REMARK 3 through 259 or resid 261 through 266 or REMARK 3 resid 268 through 271 or resid 274 REMARK 3 through 280 or resid 282 through 301 or REMARK 3 resid 303 through 305 or resid 307 REMARK 3 through 312 or resid 314 through 323 or REMARK 3 resid 325 through 354 or resid 356 REMARK 3 through 410 or resid 412 through 437 or REMARK 3 resid 439 through 459 or resid 462 REMARK 3 through 463 or resid 470 through 472 or REMARK 3 resid 474 through 479 or resid 482 REMARK 3 through 485 or resid 487 through 493 or REMARK 3 resid 495 through 497 or resid 499 REMARK 3 through 508 or resid 510 through 525 or REMARK 3 resid 531 through 591 or resid 1001 REMARK 3 through 1594)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9I0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1292144659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47036 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.21400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 3.11800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL 20MM KCL 100MM DTT 1MM, PH REMARK 280 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.57650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.95850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.95850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.57650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 226 NZ LYS A 236 2.16 REMARK 500 O HOH A 1122 O HOH A 1131 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 349 NH2 ARG B 589 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 95 -3.13 74.90 REMARK 500 VAL B 86 -58.86 -120.85 REMARK 500 LEU B 95 -3.16 74.85 REMARK 500 ASP B 230 31.40 -98.81 REMARK 500 ASP B 463 -3.13 74.65 REMARK 500 ASN B 507 -3.24 74.69 REMARK 500 LEU B 515 -3.61 75.09 REMARK 500 LEU B 532 59.02 -93.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 272 LYS A 273 -103.98 REMARK 500 LEU B 515 ILE B 516 140.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 453 SG REMARK 620 2 CYS A 471 SG 102.8 REMARK 620 3 CYS A 475 SG 115.0 119.3 REMARK 620 4 CYS A 478 SG 101.6 112.8 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A1002 O2B REMARK 620 2 HOH A1104 O 59.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 453 SG REMARK 620 2 CYS B 471 SG 106.7 REMARK 620 3 CYS B 475 SG 114.4 115.9 REMARK 620 4 CYS B 478 SG 104.0 112.3 103.0 REMARK 620 N 1 2 3 DBREF 9I0S A 63 592 UNP A0JN36 A0JN36_BOVIN 63 592 DBREF 9I0S B 63 592 UNP A0JN36 A0JN36_BOVIN 63 592 SEQADV 9I0S MET A 62 UNP A0JN36 INITIATING METHIONINE SEQADV 9I0S MET B 62 UNP A0JN36 INITIATING METHIONINE SEQRES 1 A 531 MET SER SER PRO ALA SER TRP ASN LYS GLU ASP PHE PRO SEQRES 2 A 531 TRP SER GLY LYS VAL LYS ASP VAL LEU GLN ASN VAL PHE SEQRES 3 A 531 LYS LEU GLN LYS PHE ARG PRO LEU GLN LEU GLU THR ILE SEQRES 4 A 531 ASN VAL THR MET SER GLY LYS GLU VAL PHE LEU VAL MET SEQRES 5 A 531 PRO THR GLY GLY GLY LYS SER LEU CYS TYR GLN LEU PRO SEQRES 6 A 531 ALA LEU CYS SER ASP GLY PHE THR LEU VAL ILE CYS PRO SEQRES 7 A 531 LEU ILE SER LEU MET GLU ASP GLN LEU MET VAL LEU LYS SEQRES 8 A 531 GLN LEU GLY ILE SER ALA THR MET LEU ASN ALA SER SER SEQRES 9 A 531 PRO LYS GLU HIS VAL LYS TRP VAL HIS ALA GLU MET VAL SEQRES 10 A 531 ASN LYS ASN SER LYS LEU LYS LEU ILE TYR VAL THR PRO SEQRES 11 A 531 GLU LYS ILE ALA LYS SER LYS MET PHE MET SER ARG LEU SEQRES 12 A 531 GLU LYS ALA TYR GLU ALA ARG ARG PHE THR ARG ILE ALA SEQRES 13 A 531 VAL ASP GLU VAL HIS CYS CYS SER GLN TRP GLY HIS ASP SEQRES 14 A 531 PHE ARG PRO ASP TYR LYS ALA LEU GLY ILE LEU LYS ARG SEQRES 15 A 531 GLN PHE PRO ASN ALA SER LEU ILE GLY LEU THR ALA THR SEQRES 16 A 531 ALA THR SER HIS VAL LEU LYS ASP ALA GLN LYS ILE LEU SEQRES 17 A 531 CYS VAL GLU LYS CYS PHE THR PHE THR ALA SER PHE ASN SEQRES 18 A 531 ARG PRO ASN LEU TYR TYR GLU VAL ARG GLN LYS PRO SER SEQRES 19 A 531 ASN THR GLU ASP PHE ILE GLU ASP ILE VAL LYS LEU ILE SEQRES 20 A 531 ASN GLY ARG TYR LYS GLY GLN SER GLY ILE ILE TYR CYS SEQRES 21 A 531 PHE SER GLN LYS ASP SER GLU GLN VAL THR ILE SER LEU SEQRES 22 A 531 GLN LYS LEU GLY ILE PRO ALA GLY ALA TYR HIS ALA ASN SEQRES 23 A 531 MET GLU PRO GLU ASP LYS THR LYS VAL HIS ARG ARG TRP SEQRES 24 A 531 ALA ALA ASN GLU ILE GLN VAL VAL VAL ALA THR VAL ALA SEQRES 25 A 531 PHE GLY MET GLY ILE ASP LYS PRO ASP VAL ARG PHE VAL SEQRES 26 A 531 ILE HIS HIS SER MET SER LYS SER MET GLU ASN TYR TYR SEQRES 27 A 531 GLN GLU SER GLY ARG ALA GLY ARG ASP ASP MET LYS ALA SEQRES 28 A 531 ASP CYS ILE LEU TYR TYR GLY PHE GLY ASP ILE PHE ARG SEQRES 29 A 531 ILE SER SER MET VAL VAL MET GLU ASN VAL GLY GLN GLN SEQRES 30 A 531 LYS LEU TYR GLU MET VAL SER TYR CYS GLN ASN ILE ASN SEQRES 31 A 531 LYS CYS ARG ARG VAL LEU ILE ALA GLN HIS PHE ASP GLU SEQRES 32 A 531 VAL TRP SER PRO GLU ALA CYS ASN LYS MET CYS ASP ASN SEQRES 33 A 531 CYS CYS LYS GLU ILE SER PHE GLU ARG LYS ASN VAL THR SEQRES 34 A 531 ALA TYR CYS ARG ASP LEU ILE LYS ILE LEU LYS GLN ALA SEQRES 35 A 531 GLU ASP LEU ASN GLU LYS LEU THR PRO LEU LYS LEU ILE SEQRES 36 A 531 ASP SER TRP MET GLY LYS GLY ALA SER LYS LEU ARG VAL SEQRES 37 A 531 ALA GLY LEU ALA PRO PRO THR LEU PRO ARG GLU ASP LEU SEQRES 38 A 531 GLU LYS ILE ILE ALA HIS PHE LEU ILE GLN GLN TYR LEU SEQRES 39 A 531 LYS GLU ASP TYR SER PHE THR ALA TYR ALA THR ILE SER SEQRES 40 A 531 TYR LEU LYS VAL GLY PRO LYS ALA ASN LEU LEU ASN ASN SEQRES 41 A 531 GLU ALA HIS VAL ILE THR MET ARG VAL LYS LYS SEQRES 1 B 531 MET SER SER PRO ALA SER TRP ASN LYS GLU ASP PHE PRO SEQRES 2 B 531 TRP SER GLY LYS VAL LYS ASP VAL LEU GLN ASN VAL PHE SEQRES 3 B 531 LYS LEU GLN LYS PHE ARG PRO LEU GLN LEU GLU THR ILE SEQRES 4 B 531 ASN VAL THR MET SER GLY LYS GLU VAL PHE LEU VAL MET SEQRES 5 B 531 PRO THR GLY GLY GLY LYS SER LEU CYS TYR GLN LEU PRO SEQRES 6 B 531 ALA LEU CYS SER ASP GLY PHE THR LEU VAL ILE CYS PRO SEQRES 7 B 531 LEU ILE SER LEU MET GLU ASP GLN LEU MET VAL LEU LYS SEQRES 8 B 531 GLN LEU GLY ILE SER ALA THR MET LEU ASN ALA SER SER SEQRES 9 B 531 PRO LYS GLU HIS VAL LYS TRP VAL HIS ALA GLU MET VAL SEQRES 10 B 531 ASN LYS ASN SER LYS LEU LYS LEU ILE TYR VAL THR PRO SEQRES 11 B 531 GLU LYS ILE ALA LYS SER LYS MET PHE MET SER ARG LEU SEQRES 12 B 531 GLU LYS ALA TYR GLU ALA ARG ARG PHE THR ARG ILE ALA SEQRES 13 B 531 VAL ASP GLU VAL HIS CYS CYS SER GLN TRP GLY HIS ASP SEQRES 14 B 531 PHE ARG PRO ASP TYR LYS ALA LEU GLY ILE LEU LYS ARG SEQRES 15 B 531 GLN PHE PRO ASN ALA SER LEU ILE GLY LEU THR ALA THR SEQRES 16 B 531 ALA THR SER HIS VAL LEU LYS ASP ALA GLN LYS ILE LEU SEQRES 17 B 531 CYS VAL GLU LYS CYS PHE THR PHE THR ALA SER PHE ASN SEQRES 18 B 531 ARG PRO ASN LEU TYR TYR GLU VAL ARG GLN LYS PRO SER SEQRES 19 B 531 ASN THR GLU ASP PHE ILE GLU ASP ILE VAL LYS LEU ILE SEQRES 20 B 531 ASN GLY ARG TYR LYS GLY GLN SER GLY ILE ILE TYR CYS SEQRES 21 B 531 PHE SER GLN LYS ASP SER GLU GLN VAL THR ILE SER LEU SEQRES 22 B 531 GLN LYS LEU GLY ILE PRO ALA GLY ALA TYR HIS ALA ASN SEQRES 23 B 531 MET GLU PRO GLU ASP LYS THR LYS VAL HIS ARG ARG TRP SEQRES 24 B 531 ALA ALA ASN GLU ILE GLN VAL VAL VAL ALA THR VAL ALA SEQRES 25 B 531 PHE GLY MET GLY ILE ASP LYS PRO ASP VAL ARG PHE VAL SEQRES 26 B 531 ILE HIS HIS SER MET SER LYS SER MET GLU ASN TYR TYR SEQRES 27 B 531 GLN GLU SER GLY ARG ALA GLY ARG ASP ASP MET LYS ALA SEQRES 28 B 531 ASP CYS ILE LEU TYR TYR GLY PHE GLY ASP ILE PHE ARG SEQRES 29 B 531 ILE SER SER MET VAL VAL MET GLU ASN VAL GLY GLN GLN SEQRES 30 B 531 LYS LEU TYR GLU MET VAL SER TYR CYS GLN ASN ILE ASN SEQRES 31 B 531 LYS CYS ARG ARG VAL LEU ILE ALA GLN HIS PHE ASP GLU SEQRES 32 B 531 VAL TRP SER PRO GLU ALA CYS ASN LYS MET CYS ASP ASN SEQRES 33 B 531 CYS CYS LYS GLU ILE SER PHE GLU ARG LYS ASN VAL THR SEQRES 34 B 531 ALA TYR CYS ARG ASP LEU ILE LYS ILE LEU LYS GLN ALA SEQRES 35 B 531 GLU ASP LEU ASN GLU LYS LEU THR PRO LEU LYS LEU ILE SEQRES 36 B 531 ASP SER TRP MET GLY LYS GLY ALA SER LYS LEU ARG VAL SEQRES 37 B 531 ALA GLY LEU ALA PRO PRO THR LEU PRO ARG GLU ASP LEU SEQRES 38 B 531 GLU LYS ILE ILE ALA HIS PHE LEU ILE GLN GLN TYR LEU SEQRES 39 B 531 LYS GLU ASP TYR SER PHE THR ALA TYR ALA THR ILE SER SEQRES 40 B 531 TYR LEU LYS VAL GLY PRO LYS ALA ASN LEU LEU ASN ASN SEQRES 41 B 531 GLU ALA HIS VAL ILE THR MET ARG VAL LYS LYS HET ZN A1001 1 HET ADP A1002 27 HET MG A1003 1 HET PO4 A1004 5 HET ZN B1001 1 HET ADP B1002 27 HET MG B1003 1 HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 MG 2(MG 2+) FORMUL 6 PO4 O4 P 3- FORMUL 10 HOH *62(H2 O) HELIX 1 AA1 PRO A 65 ASN A 69 5 5 HELIX 2 AA2 TRP A 75 VAL A 86 1 12 HELIX 3 AA3 LEU A 95 SER A 105 1 11 HELIX 4 AA4 SER A 120 SER A 130 1 11 HELIX 5 AA5 LEU A 140 LEU A 154 1 15 HELIX 6 AA6 PRO A 166 ASN A 179 1 14 HELIX 7 AA7 PRO A 191 LYS A 196 1 6 HELIX 8 AA8 SER A 197 ALA A 210 1 14 HELIX 9 AA9 VAL A 221 SER A 225 5 5 HELIX 10 AB1 ARG A 232 LEU A 238 5 7 HELIX 11 AB2 GLY A 239 PHE A 245 1 7 HELIX 12 AB3 THR A 258 LEU A 269 1 12 HELIX 13 AB4 ASN A 296 TYR A 312 1 17 HELIX 14 AB5 SER A 323 LEU A 337 1 15 HELIX 15 AB6 GLU A 349 ALA A 362 1 14 HELIX 16 AB7 SER A 394 GLY A 403 1 10 HELIX 17 AB8 GLY A 419 VAL A 430 1 12 HELIX 18 AB9 VAL A 435 ASN A 449 1 15 HELIX 19 AC1 CYS A 453 GLN A 460 1 8 HELIX 20 AC2 CYS A 475 LYS A 480 1 6 HELIX 21 AC3 VAL A 489 LEU A 506 1 18 HELIX 22 AC4 THR A 511 GLY A 521 1 11 HELIX 23 AC5 ALA A 524 ARG A 528 5 5 HELIX 24 AC6 PRO A 538 GLN A 552 1 15 HELIX 25 AC7 PRO A 574 ASN A 581 5 8 HELIX 26 AC8 SER B 64 ASN B 69 5 6 HELIX 27 AC9 TRP B 75 VAL B 86 1 12 HELIX 28 AD1 LEU B 95 SER B 105 1 11 HELIX 29 AD2 SER B 120 SER B 130 1 11 HELIX 30 AD3 LEU B 140 LEU B 154 1 15 HELIX 31 AD4 PRO B 166 ASN B 179 1 14 HELIX 32 AD5 THR B 190 LYS B 196 1 7 HELIX 33 AD6 SER B 197 ALA B 210 1 14 HELIX 34 AD7 VAL B 221 SER B 225 5 5 HELIX 35 AD8 ARG B 232 LEU B 238 5 7 HELIX 36 AD9 GLY B 239 PHE B 245 1 7 HELIX 37 AE1 THR B 258 LEU B 269 1 12 HELIX 38 AE2 ASN B 296 TYR B 312 1 17 HELIX 39 AE3 SER B 323 LEU B 337 1 15 HELIX 40 AE4 GLU B 349 ALA B 362 1 14 HELIX 41 AE5 SER B 394 GLY B 403 1 10 HELIX 42 AE6 GLY B 419 VAL B 430 1 12 HELIX 43 AE7 VAL B 435 ASN B 449 1 15 HELIX 44 AE8 CYS B 453 PHE B 462 1 10 HELIX 45 AE9 SER B 467 ASN B 472 1 6 HELIX 46 AF1 CYS B 475 LYS B 480 1 6 HELIX 47 AF2 VAL B 489 LEU B 506 1 18 HELIX 48 AF3 ILE B 516 GLY B 521 1 6 HELIX 49 AF4 PRO B 538 GLN B 552 1 15 HELIX 50 AF5 PRO B 574 ASN B 581 5 8 SHEET 1 AA1 7 ALA A 158 LEU A 161 0 SHEET 2 AA1 7 LEU A 186 VAL A 189 1 O TYR A 188 N THR A 159 SHEET 3 AA1 7 PHE A 133 ILE A 137 1 N VAL A 136 O VAL A 189 SHEET 4 AA1 7 PHE A 213 ASP A 219 1 O ALA A 217 N ILE A 137 SHEET 5 AA1 7 SER A 249 THR A 254 1 O SER A 249 N ILE A 216 SHEET 6 AA1 7 VAL A 109 VAL A 112 1 N LEU A 111 O GLY A 252 SHEET 7 AA1 7 PHE A 275 THR A 278 1 O PHE A 277 N PHE A 110 SHEET 1 AA2 6 LEU A 286 GLN A 292 0 SHEET 2 AA2 6 ALA A 412 TYR A 418 1 O LEU A 416 N ARG A 291 SHEET 3 AA2 6 PHE A 385 HIS A 388 1 N HIS A 388 O ILE A 415 SHEET 4 AA2 6 GLY A 317 CYS A 321 1 N ILE A 318 O ILE A 387 SHEET 5 AA2 6 VAL A 367 THR A 371 1 O ALA A 370 N CYS A 321 SHEET 6 AA2 6 ALA A 341 TYR A 344 1 N GLY A 342 O VAL A 367 SHEET 1 AA3 2 PHE A 484 ASN A 488 0 SHEET 2 AA3 2 THR A 587 LYS A 591 -1 O VAL A 590 N GLU A 485 SHEET 1 AA4 2 LEU A 555 PHE A 561 0 SHEET 2 AA4 2 THR A 566 VAL A 572 -1 O TYR A 569 N ASP A 558 SHEET 1 AA5 7 ALA B 158 LEU B 161 0 SHEET 2 AA5 7 LEU B 186 VAL B 189 1 O TYR B 188 N THR B 159 SHEET 3 AA5 7 PHE B 133 ILE B 137 1 N VAL B 136 O VAL B 189 SHEET 4 AA5 7 PHE B 213 ASP B 219 1 O ALA B 217 N ILE B 137 SHEET 5 AA5 7 SER B 249 THR B 254 1 O ILE B 251 N VAL B 218 SHEET 6 AA5 7 GLU B 108 VAL B 112 1 N LEU B 111 O GLY B 252 SHEET 7 AA5 7 CYS B 274 THR B 278 1 O PHE B 277 N VAL B 112 SHEET 1 AA6 6 LEU B 286 GLN B 292 0 SHEET 2 AA6 6 ALA B 412 TYR B 418 1 O CYS B 414 N TYR B 287 SHEET 3 AA6 6 PHE B 385 HIS B 388 1 N HIS B 388 O ILE B 415 SHEET 4 AA6 6 GLY B 317 CYS B 321 1 N ILE B 318 O ILE B 387 SHEET 5 AA6 6 VAL B 367 THR B 371 1 O ALA B 370 N CYS B 321 SHEET 6 AA6 6 ALA B 341 TYR B 344 1 N TYR B 344 O VAL B 369 SHEET 1 AA7 2 PHE B 484 ASN B 488 0 SHEET 2 AA7 2 THR B 587 LYS B 591 -1 O MET B 588 N LYS B 487 SHEET 1 AA8 2 LEU B 555 PHE B 561 0 SHEET 2 AA8 2 THR B 566 VAL B 572 -1 O TYR B 569 N ASP B 558 LINK SG CYS A 453 ZN ZN A1001 1555 1555 2.38 LINK SG CYS A 471 ZN ZN A1001 1555 1555 2.34 LINK SG CYS A 475 ZN ZN A1001 1555 1555 2.34 LINK SG CYS A 478 ZN ZN A1001 1555 1555 2.37 LINK O2B ADP A1002 MG MG A1003 1555 1555 2.39 LINK MG MG A1003 O HOH A1104 1555 1555 2.41 LINK SG CYS B 453 ZN ZN B1001 1555 1555 2.39 LINK SG CYS B 471 ZN ZN B1001 1555 1555 2.35 LINK SG CYS B 475 ZN ZN B1001 1555 1555 2.35 LINK SG CYS B 478 ZN ZN B1001 1555 1555 2.40 LINK O2B ADP B1002 MG MG B1003 1555 1555 2.21 CRYST1 55.153 119.450 201.917 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018131 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004953 0.00000 MTRIX1 1 0.469974 0.310149 -0.826397 12.51116 1 MTRIX2 1 0.311160 -0.934348 -0.173706 1.63351 1 MTRIX3 1 -0.826017 -0.175504 -0.535625 24.01598 1 CONECT 3118 8471 CONECT 3269 8471 CONECT 3300 8471 CONECT 3322 8471 CONECT 7350 8505 CONECT 7501 8505 CONECT 7532 8505 CONECT 7554 8505 CONECT 8471 3118 3269 3300 3322 CONECT 8472 8473 8474 8475 8479 CONECT 8473 8472 CONECT 8474 8472 8499 CONECT 8475 8472 CONECT 8476 8477 8478 8479 8480 CONECT 8477 8476 CONECT 8478 8476 CONECT 8479 8472 8476 CONECT 8480 8476 8481 CONECT 8481 8480 8482 CONECT 8482 8481 8483 8484 CONECT 8483 8482 8488 CONECT 8484 8482 8485 8486 CONECT 8485 8484 CONECT 8486 8484 8487 8488 CONECT 8487 8486 CONECT 8488 8483 8486 8489 CONECT 8489 8488 8490 8498 CONECT 8490 8489 8491 CONECT 8491 8490 8492 CONECT 8492 8491 8493 8498 CONECT 8493 8492 8494 8495 CONECT 8494 8493 CONECT 8495 8493 8496 CONECT 8496 8495 8497 CONECT 8497 8496 8498 CONECT 8498 8489 8492 8497 CONECT 8499 8474 8537 CONECT 8500 8501 8502 8503 8504 CONECT 8501 8500 CONECT 8502 8500 CONECT 8503 8500 CONECT 8504 8500 CONECT 8505 7350 7501 7532 7554 CONECT 8506 8507 8508 8509 8513 CONECT 8507 8506 CONECT 8508 8506 8533 CONECT 8509 8506 CONECT 8510 8511 8512 8513 8514 CONECT 8511 8510 CONECT 8512 8510 CONECT 8513 8506 8510 CONECT 8514 8510 8515 CONECT 8515 8514 8516 CONECT 8516 8515 8517 8518 CONECT 8517 8516 8522 CONECT 8518 8516 8519 8520 CONECT 8519 8518 CONECT 8520 8518 8521 8522 CONECT 8521 8520 CONECT 8522 8517 8520 8523 CONECT 8523 8522 8524 8532 CONECT 8524 8523 8525 CONECT 8525 8524 8526 CONECT 8526 8525 8527 8532 CONECT 8527 8526 8528 8529 CONECT 8528 8527 CONECT 8529 8527 8530 CONECT 8530 8529 8531 CONECT 8531 8530 8532 CONECT 8532 8523 8526 8531 CONECT 8533 8508 CONECT 8537 8499 MASTER 416 0 7 50 34 0 0 9 8591 2 72 82 END