HEADER RNA BINDING PROTEIN 15-JAN-25 9I0V TITLE CRYSTAL STRUCTURE OF DASR IN COMPLEX WITH A SYNTHETIC DASR-BINDING RNA TITLE 2 APTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REPRESSOR DASR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: A SELEX-DERIVED ARTIFICIAL RNA APTAMER; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 GENE: DASR, SCO5231, SC7E4.28C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS BACTERIAL REPRESSOR GNTR-HUTC FAMILY MEMBER SYNTHETIC RNA APTAMER KEYWDS 2 SELEX-DERIVED APTAMER, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.MULLER,B.SUESS REVDAT 1 28-JAN-26 9I0V 0 JRNL AUTH Y.A.MULLER,B.SUESS JRNL TITL CRYSTAL STRUCTURE OF DASR IN COMPLEX WITH A SYNTHETIC JRNL TITL 2 DASR-BINDING RNA APTAMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 54.3 REMARK 3 NUMBER OF REFLECTIONS : 31562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.410 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3100 - 4.8700 0.99 4030 235 0.1736 0.2567 REMARK 3 2 4.8700 - 3.8700 0.90 3532 243 0.1501 0.1891 REMARK 3 3 3.8700 - 3.3800 0.73 2809 220 0.1962 0.2272 REMARK 3 4 3.3800 - 3.0700 0.99 3841 272 0.2245 0.2664 REMARK 3 5 3.0700 - 2.8500 0.94 3584 281 0.2693 0.3435 REMARK 3 6 2.8500 - 2.7000 0.81 2830 174 0.2797 0.2545 REMARK 3 7 2.6400 - 2.5500 0.64 1706 119 0.2905 0.3856 REMARK 3 8 2.5500 - 2.4400 0.55 2147 109 0.2897 0.3725 REMARK 3 9 2.4400 - 2.3400 0.47 1792 154 0.2968 0.3302 REMARK 3 10 2.3400 - 2.2800 0.42 1290 77 0.2949 0.3430 REMARK 3 11 2.2200 - 2.1900 0.35 534 41 0.2788 0.2399 REMARK 3 12 2.1900 - 2.1300 0.27 1035 78 0.2757 0.3275 REMARK 3 13 2.1300 - 2.1000 0.21 399 19 0.2748 0.3249 REMARK 3 14 2.0400 - 2.0200 0.01 11 0 0.2854 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.293 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5292 REMARK 3 ANGLE : 0.648 7474 REMARK 3 CHIRALITY : 0.037 914 REMARK 3 PLANARITY : 0.006 722 REMARK 3 DIHEDRAL : 19.906 2448 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 18 THROUGH 102) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8428 -8.2306 42.3121 REMARK 3 T TENSOR REMARK 3 T11: 0.2828 T22: 0.2357 REMARK 3 T33: 0.1997 T12: -0.0070 REMARK 3 T13: 0.0105 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 4.8554 L22: 1.1904 REMARK 3 L33: 1.8504 L12: -0.8264 REMARK 3 L13: 2.1407 L23: -0.3349 REMARK 3 S TENSOR REMARK 3 S11: -0.1433 S12: -0.0609 S13: -0.2540 REMARK 3 S21: 0.1085 S22: 0.0942 S23: 0.1747 REMARK 3 S31: -0.1358 S32: 0.0189 S33: 0.0529 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 103 THROUGH 252) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1622 1.7249 21.3046 REMARK 3 T TENSOR REMARK 3 T11: 0.3187 T22: 0.2217 REMARK 3 T33: 0.2552 T12: -0.0368 REMARK 3 T13: -0.0394 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.2127 L22: 2.2612 REMARK 3 L33: 3.0145 L12: -1.1329 REMARK 3 L13: 0.9069 L23: -0.3764 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: 0.0566 S13: 0.0357 REMARK 3 S21: 0.0041 S22: 0.0757 S23: 0.1051 REMARK 3 S31: -0.0014 S32: -0.1893 S33: -0.1302 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 18 THROUGH 102) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2871 -12.9004 8.8652 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.3983 REMARK 3 T33: 0.3307 T12: 0.0044 REMARK 3 T13: -0.0980 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.4294 L22: 1.6536 REMARK 3 L33: 6.2713 L12: 1.0412 REMARK 3 L13: -1.9269 L23: -0.5892 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.2895 S13: 0.1537 REMARK 3 S21: -0.1562 S22: 0.2381 S23: 0.2432 REMARK 3 S31: 0.0669 S32: 0.3509 S33: -0.2367 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 103 THROUGH 252) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9129 -23.0326 38.9969 REMARK 3 T TENSOR REMARK 3 T11: 0.3278 T22: 0.2156 REMARK 3 T33: 0.2813 T12: 0.0405 REMARK 3 T13: -0.0362 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.0931 L22: 1.9917 REMARK 3 L33: 3.3935 L12: 0.6821 REMARK 3 L13: -0.0054 L23: -1.4450 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: -0.0412 S13: -0.0912 REMARK 3 S21: 0.0031 S22: 0.1045 S23: 0.1792 REMARK 3 S31: 0.0390 S32: -0.1061 S33: -0.0640 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 32) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2466 -8.6660 37.1782 REMARK 3 T TENSOR REMARK 3 T11: 0.4655 T22: 0.8856 REMARK 3 T33: 0.6771 T12: -0.1097 REMARK 3 T13: 0.2176 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 3.2637 L22: 3.0421 REMARK 3 L33: 3.0952 L12: -0.3916 REMARK 3 L13: 0.8999 L23: 0.3881 REMARK 3 S TENSOR REMARK 3 S11: 0.2785 S12: 0.4496 S13: 0.1646 REMARK 3 S21: -0.7781 S22: -0.3576 S23: -1.2336 REMARK 3 S31: 0.0548 S32: 1.3750 S33: -0.0991 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 32) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3895 -11.2197 -2.8318 REMARK 3 T TENSOR REMARK 3 T11: 0.7196 T22: 1.7428 REMARK 3 T33: 1.0285 T12: 0.0670 REMARK 3 T13: 0.0921 T23: -0.3048 REMARK 3 L TENSOR REMARK 3 L11: 2.4914 L22: 3.9303 REMARK 3 L33: 3.6201 L12: 0.6115 REMARK 3 L13: -1.7101 L23: -0.9714 REMARK 3 S TENSOR REMARK 3 S11: -0.1790 S12: 0.8216 S13: -0.5071 REMARK 3 S21: -0.8700 S22: 0.0389 S23: -1.4684 REMARK 3 S31: 0.0020 S32: 2.0241 S33: 0.0803 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 24 through 25 or REMARK 3 resid 27 through 99 or resid 101 through REMARK 3 249)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 24 through 25 or REMARK 3 resid 27 through 99 or resid 101 through REMARK 3 249)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9I0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1292144665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31574 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 42.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 54.3 REMARK 200 DATA REDUNDANCY : 6.850 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 12.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.77 REMARK 200 R MERGE FOR SHELL (I) : 0.88800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.106 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M POTASSIUM BROMIDE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2,000, 30% V/V ETHYLENE REMARK 280 GLYCOL. (HAMPTON RESEARCH INDEX SCREEN SOLUTION 96 + HAMPTON REMARK 280 RESEARCH ADDITIVE SCREEN SOLUTION 61; RATIO 10:1), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.66350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ASP A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 VAL A 16 REMARK 465 ARG A 17 REMARK 465 GLN A 253 REMARK 465 ASP A 254 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 ASP B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 ALA B 8 REMARK 465 GLU B 9 REMARK 465 ASN B 10 REMARK 465 GLU B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 VAL B 16 REMARK 465 ARG B 17 REMARK 465 GLN B 253 REMARK 465 ASP B 254 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H42 C D 4 O6 G D 29 1.57 REMARK 500 OE1 GLU A 47 HH11 ARG A 58 1.59 REMARK 500 OE1 GLU B 47 HH11 ARG B 58 1.60 REMARK 500 NH2 ARG B 58 O6 G D 11 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 142 OE2 GLU B 108 1565 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G C 1 P G C 1 OP3 -0.147 REMARK 500 G D 1 P G D 1 OP3 -0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 -77.70 -58.75 REMARK 500 ARG A 20 46.94 77.24 REMARK 500 THR A 210 -166.61 -109.57 REMARK 500 ALA B 19 -94.39 65.71 REMARK 500 THR B 210 -167.52 -111.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 9I0V A 1 254 UNP Q9K492 DASR_STRCO 1 254 DBREF 9I0V B 1 254 UNP Q9K492 DASR_STRCO 1 254 DBREF 9I0V C 1 32 PDB 9I0V 9I0V 1 32 DBREF 9I0V D 1 32 PDB 9I0V 9I0V 1 32 SEQRES 1 A 254 MET SER THR ASP VAL SER SER ALA GLU ASN GLU GLY GLY SEQRES 2 A 254 ALA THR VAL ARG THR ALA ARG VAL PRO LYS TYR TYR ARG SEQRES 3 A 254 LEU LYS LYS HIS LEU LEU ASP MET THR ARG THR GLN THR SEQRES 4 A 254 PRO GLY THR PRO VAL PRO PRO GLU ARG THR LEU ALA ALA SEQRES 5 A 254 GLU PHE ASP THR SER ARG THR THR VAL ARG GLN ALA LEU SEQRES 6 A 254 GLN GLU LEU VAL VAL GLU GLY ARG LEU GLU ARG ILE GLN SEQRES 7 A 254 GLY LYS GLY THR PHE VAL ALA LYS PRO LYS VAL SER GLN SEQRES 8 A 254 ALA LEU GLN LEU THR SER TYR THR GLU ASP MET ARG ALA SEQRES 9 A 254 GLN GLY LEU GLU PRO THR SER GLN LEU LEU ASP ILE GLY SEQRES 10 A 254 TYR ILE THR ALA ASP ASP ARG LEU ALA GLY LEU LEU ASP SEQRES 11 A 254 ILE THR ALA GLY GLY ARG VAL LEU ARG ILE GLU ARG LEU SEQRES 12 A 254 ARG MET ALA ASN GLY GLU PRO MET ALA ILE GLU THR THR SEQRES 13 A 254 HIS LEU SER ALA LYS ARG PHE PRO ALA LEU ARG ARG SER SEQRES 14 A 254 LEU VAL LYS TYR THR SER LEU TYR THR ALA LEU ALA GLU SEQRES 15 A 254 VAL TYR ASP VAL HIS LEU ALA GLU ALA GLU GLU THR ILE SEQRES 16 A 254 GLU THR SER LEU ALA THR PRO ARG GLU ALA GLY LEU LEU SEQRES 17 A 254 GLY THR ASP VAL GLY LEU PRO MET LEU MET LEU SER ARG SEQRES 18 A 254 HIS SER GLN ASP ARG THR GLY GLN PRO VAL GLU TRP VAL SEQRES 19 A 254 ARG SER VAL TYR ARG GLY ASP ARG TYR LYS PHE VAL ALA SEQRES 20 A 254 ARG LEU LYS ARG PRO GLN ASP SEQRES 1 B 254 MET SER THR ASP VAL SER SER ALA GLU ASN GLU GLY GLY SEQRES 2 B 254 ALA THR VAL ARG THR ALA ARG VAL PRO LYS TYR TYR ARG SEQRES 3 B 254 LEU LYS LYS HIS LEU LEU ASP MET THR ARG THR GLN THR SEQRES 4 B 254 PRO GLY THR PRO VAL PRO PRO GLU ARG THR LEU ALA ALA SEQRES 5 B 254 GLU PHE ASP THR SER ARG THR THR VAL ARG GLN ALA LEU SEQRES 6 B 254 GLN GLU LEU VAL VAL GLU GLY ARG LEU GLU ARG ILE GLN SEQRES 7 B 254 GLY LYS GLY THR PHE VAL ALA LYS PRO LYS VAL SER GLN SEQRES 8 B 254 ALA LEU GLN LEU THR SER TYR THR GLU ASP MET ARG ALA SEQRES 9 B 254 GLN GLY LEU GLU PRO THR SER GLN LEU LEU ASP ILE GLY SEQRES 10 B 254 TYR ILE THR ALA ASP ASP ARG LEU ALA GLY LEU LEU ASP SEQRES 11 B 254 ILE THR ALA GLY GLY ARG VAL LEU ARG ILE GLU ARG LEU SEQRES 12 B 254 ARG MET ALA ASN GLY GLU PRO MET ALA ILE GLU THR THR SEQRES 13 B 254 HIS LEU SER ALA LYS ARG PHE PRO ALA LEU ARG ARG SER SEQRES 14 B 254 LEU VAL LYS TYR THR SER LEU TYR THR ALA LEU ALA GLU SEQRES 15 B 254 VAL TYR ASP VAL HIS LEU ALA GLU ALA GLU GLU THR ILE SEQRES 16 B 254 GLU THR SER LEU ALA THR PRO ARG GLU ALA GLY LEU LEU SEQRES 17 B 254 GLY THR ASP VAL GLY LEU PRO MET LEU MET LEU SER ARG SEQRES 18 B 254 HIS SER GLN ASP ARG THR GLY GLN PRO VAL GLU TRP VAL SEQRES 19 B 254 ARG SER VAL TYR ARG GLY ASP ARG TYR LYS PHE VAL ALA SEQRES 20 B 254 ARG LEU LYS ARG PRO GLN ASP SEQRES 1 C 32 G G C C A C C C G A G A U SEQRES 2 C 32 G C C C A G U G C C C U A SEQRES 3 C 32 G U G G C C SEQRES 1 D 32 G G C C A C C C G A G A U SEQRES 2 D 32 G C C C A G U G C C C U A SEQRES 3 D 32 G U G G C C HET BR A 301 1 HET BR B 301 1 HET BR B 302 1 HET BR C 101 1 HETNAM BR BROMIDE ION FORMUL 5 BR 4(BR 1-) FORMUL 9 HOH *100(H2 O) HELIX 1 AA1 TYR A 24 ARG A 36 1 13 HELIX 2 AA2 PRO A 46 ASP A 55 1 10 HELIX 3 AA3 SER A 57 GLU A 71 1 15 HELIX 4 AA4 SER A 97 GLN A 105 1 9 HELIX 5 AA5 ASP A 122 ASP A 130 1 9 HELIX 6 AA6 ALA A 165 LEU A 170 1 6 HELIX 7 AA7 VAL A 171 TYR A 173 5 3 HELIX 8 AA8 SER A 175 ASP A 185 1 11 HELIX 9 AA9 THR A 201 GLY A 209 1 9 HELIX 10 AB1 TYR B 24 ARG B 36 1 13 HELIX 11 AB2 PRO B 46 ASP B 55 1 10 HELIX 12 AB3 SER B 57 GLU B 71 1 15 HELIX 13 AB4 TYR B 98 GLN B 105 1 8 HELIX 14 AB5 ASP B 122 ASP B 130 1 9 HELIX 15 AB6 ALA B 165 LEU B 170 1 6 HELIX 16 AB7 VAL B 171 TYR B 173 5 3 HELIX 17 AB8 SER B 175 ASP B 185 1 11 HELIX 18 AB9 THR B 201 GLY B 209 1 9 SHEET 1 AA1 2 LEU A 74 ILE A 77 0 SHEET 2 AA1 2 GLY A 81 VAL A 84 -1 O PHE A 83 N GLU A 75 SHEET 1 AA2 8 VAL A 89 ALA A 92 0 SHEET 2 AA2 8 TYR A 243 LEU A 249 1 O LYS A 244 N VAL A 89 SHEET 3 AA2 8 LEU B 188 LEU B 199 -1 O GLU B 193 N ALA A 247 SHEET 4 AA2 8 PRO B 215 ASP B 225 -1 O MET B 216 N SER B 198 SHEET 5 AA2 8 PRO B 230 ARG B 239 -1 O SER B 236 N LEU B 219 SHEET 6 AA2 8 GLU B 149 SER B 159 -1 N MET B 151 O ARG B 239 SHEET 7 AA2 8 ARG B 136 ALA B 146 -1 N ILE B 140 O THR B 156 SHEET 8 AA2 8 PRO B 109 THR B 120 -1 N GLY B 117 O ARG B 139 SHEET 1 AA3 8 PRO A 109 THR A 120 0 SHEET 2 AA3 8 ARG A 136 ALA A 146 -1 O ARG A 139 N GLY A 117 SHEET 3 AA3 8 GLU A 149 SER A 159 -1 O ALA A 152 N ARG A 144 SHEET 4 AA3 8 PRO A 230 ARG A 239 -1 O ARG A 235 N THR A 155 SHEET 5 AA3 8 PRO A 215 ASP A 225 -1 N LEU A 219 O SER A 236 SHEET 6 AA3 8 LEU A 188 LEU A 199 -1 N GLU A 190 O GLN A 224 SHEET 7 AA3 8 TYR B 243 LEU B 249 -1 O PHE B 245 N ILE A 195 SHEET 8 AA3 8 VAL B 89 ALA B 92 1 N VAL B 89 O LYS B 244 SHEET 1 AA4 2 LEU B 74 ILE B 77 0 SHEET 2 AA4 2 GLY B 81 VAL B 84 -1 O PHE B 83 N GLU B 75 CRYST1 78.938 51.327 116.400 90.00 108.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012668 0.000000 0.004297 0.00000 SCALE2 0.000000 0.019483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009072 0.00000 MTRIX1 1 0.751724 0.009751 -0.659406 20.81630 1 MTRIX2 1 0.009833 -0.999945 -0.003577 -21.22703 1 MTRIX3 1 -0.659405 -0.003795 -0.751778 55.08720 1 MTRIX1 2 0.755623 0.075968 -0.650586 21.04814 1 MTRIX2 2 0.080104 -0.996514 -0.023326 -22.61431 1 MTRIX3 2 -0.650090 -0.034489 -0.759074 54.50843 1 MASTER 430 0 4 18 20 0 0 12 5178 4 0 46 END