HEADER MEMBRANE PROTEIN 21-JAN-25 9I2L TITLE BTUJ2 - DUF4465 DOMAIN CONTAINING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUF4465 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: LIPOPROTEIN EXPORT SEQUENCE REMOVED, HIS-TAGGED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 ATCC: 29148; SOURCE 5 GENE: BT_1957; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS OUTER MEMBRANE, B12 BINDING, LIPOPROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CLARKE,M.BANASIK,R.PICKERSGILL REVDAT 1 05-MAR-25 9I2L 0 JRNL AUTH R.JUODEIKIS,R.ULRICH,C.CLARKE,M.BANASIK,M.WARREN, JRNL AUTH 2 R.PICKERSGILL JRNL TITL TO BE RELEASED (2024). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.88) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 15635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.823 REMARK 3 FREE R VALUE TEST SET COUNT : 754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4069 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 188 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 0.95100 REMARK 3 B33 (A**2) : -0.53100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.392 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.317 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.605 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4388 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3786 ; 0.003 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6047 ; 2.506 ; 1.846 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8678 ; 1.024 ; 1.779 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 8.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 10 ;11.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 598 ;12.952 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5317 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1127 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 827 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 35 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2168 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.315 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2060 ; 4.751 ; 3.709 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2060 ; 4.751 ; 3.710 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2568 ; 6.917 ; 6.659 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2569 ; 6.918 ; 6.660 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2328 ; 5.311 ; 3.979 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2329 ; 5.310 ; 3.978 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3479 ; 7.806 ; 7.161 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3480 ; 7.805 ; 7.160 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 49 B 303 NULL REMARK 3 1 A 49 A 303 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9I2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1292142273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3-4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.1.7 REMARK 200 DATA SCALING SOFTWARE : STARANISO 2.3.94 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 81.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SHARDS WITH A DISTINCTLY RED COLOR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% W/V PEG, 0.2M SODIUM CITRATE PH REMARK 280 3.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.87300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.87300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 ARG B 5 REMARK 465 PHE B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 CYS B 11 REMARK 465 LEU B 12 REMARK 465 PHE B 13 REMARK 465 THR B 14 REMARK 465 ALA B 15 REMARK 465 THR B 16 REMARK 465 ALA B 17 REMARK 465 LEU B 18 REMARK 465 PHE B 19 REMARK 465 SER B 20 REMARK 465 GLY B 21 REMARK 465 CYS B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 ASP B 25 REMARK 465 ASP B 26 REMARK 465 ASP B 27 REMARK 465 PHE B 28 REMARK 465 LEU B 29 REMARK 465 MET B 30 REMARK 465 ASP B 31 REMARK 465 PRO B 32 REMARK 465 VAL B 33 REMARK 465 ASP B 34 REMARK 465 SER B 35 REMARK 465 GLY B 36 REMARK 465 THR B 37 REMARK 465 SER B 38 REMARK 465 GLN B 39 REMARK 465 THR B 40 REMARK 465 ARG B 41 REMARK 465 ALA B 42 REMARK 465 VAL B 43 REMARK 465 THR B 44 REMARK 465 ASN B 45 REMARK 465 PRO B 46 REMARK 465 ASP B 47 REMARK 465 GLY B 48 REMARK 465 MET A 0 REMARK 465 LYS A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 CYS A 11 REMARK 465 LEU A 12 REMARK 465 PHE A 13 REMARK 465 THR A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 PHE A 19 REMARK 465 SER A 20 REMARK 465 GLY A 21 REMARK 465 CYS A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 ASP A 25 REMARK 465 ASP A 26 REMARK 465 ASP A 27 REMARK 465 PHE A 28 REMARK 465 LEU A 29 REMARK 465 MET A 30 REMARK 465 ASP A 31 REMARK 465 PRO A 32 REMARK 465 VAL A 33 REMARK 465 ASP A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 465 THR A 37 REMARK 465 SER A 38 REMARK 465 GLN A 39 REMARK 465 THR A 40 REMARK 465 ARG A 41 REMARK 465 ALA A 42 REMARK 465 VAL A 43 REMARK 465 THR A 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 525 O HOH A 526 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 49 CA - CB - OG1 ANGL. DEV. = -14.2 DEGREES REMARK 500 GLY B 64 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 GLU B 146 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 LYS B 152 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG B 245 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 55 CB - CA - C ANGL. DEV. = 15.1 DEGREES REMARK 500 GLY A 64 C - N - CA ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 251 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 251 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 54 -12.68 69.67 REMARK 500 ASN B 87 -86.84 -112.53 REMARK 500 ASN B 118 36.91 -144.86 REMARK 500 SER B 124 111.00 -30.43 REMARK 500 ASN B 151 69.81 26.27 REMARK 500 SER B 157 -120.01 -91.31 REMARK 500 ARG B 241 146.96 -177.84 REMARK 500 PHE A 54 -12.31 68.24 REMARK 500 ASN A 87 -88.88 -114.55 REMARK 500 ASN A 118 39.12 -148.52 REMARK 500 ASN A 122 109.37 -59.24 REMARK 500 SER A 124 108.91 -33.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 241 0.13 SIDE CHAIN REMARK 500 ARG B 245 0.07 SIDE CHAIN REMARK 500 ARG A 245 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 53 O REMARK 620 2 ASP B 55 OD1 78.2 REMARK 620 3 SER B 157 OG 79.4 92.9 REMARK 620 4 ASN B 160 O 106.9 95.4 170.5 REMARK 620 5 ASP B 299 OD1 66.5 143.9 74.2 101.5 REMARK 620 6 ASP B 299 OD2 117.4 164.3 88.8 82.0 51.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 53 O REMARK 620 2 ASP A 55 OD2 90.5 REMARK 620 3 SER A 157 O 157.3 73.7 REMARK 620 4 SER A 157 OG 90.3 62.2 68.1 REMARK 620 5 ASN A 160 O 114.9 135.6 87.6 145.4 REMARK 620 6 ASP A 299 OD1 66.3 130.0 111.5 73.7 94.2 REMARK 620 7 ASP A 299 OD2 114.3 134.2 69.6 78.9 69.3 48.4 REMARK 620 N 1 2 3 4 5 6 DBREF 9I2L B 0 304 UNP Q8A6C7 Q8A6C7_BACTN 1 305 DBREF 9I2L A 0 304 UNP Q8A6C7 Q8A6C7_BACTN 1 305 SEQRES 1 B 305 MET LYS ARG LYS LEU ARG PHE LEU ALA GLY ALA CYS LEU SEQRES 2 B 305 PHE THR ALA THR ALA LEU PHE SER GLY CYS SER SER ASP SEQRES 3 B 305 ASP ASP PHE LEU MET ASP PRO VAL ASP SER GLY THR SER SEQRES 4 B 305 GLN THR ARG ALA VAL THR ASN PRO ASP GLY THR LEU THR SEQRES 5 B 305 ILE THR PHE ASP ASP PHE ASP PRO GLY MET LEU ALA GLY SEQRES 6 B 305 PRO THR SER ALA GLY GLU ASN LEU TYR SER TYR GLN GLY SEQRES 7 B 305 TYR PRO GLN VAL THR THR ILE TYR ASP ASN THR PRO GLU SEQRES 8 B 305 GLU TYR LEU PHE LEU SER MET PHE ASN THR VAL GLY GLY SEQRES 9 B 305 SER THR GLU TYR SER SER GLY GLY ILE ALA LEU SER ASN SEQRES 10 B 305 TRP ASN ILE ARG SER ASN GLN SER GLY ASN THR GLY ASP SEQRES 11 B 305 TRP TRP TYR SER TYR LEU ASN GLN CYS SER VAL TYR ASN SEQRES 12 B 305 THR ALA VAL GLU ALA GLU GLY GLN ASN LYS GLU ALA GLY SEQRES 13 B 305 HIS SER GLY SER ASN PHE GLY VAL VAL TYR GLY TYR VAL SEQRES 14 B 305 ASP ALA TYR ASN GLN ALA TRP MET ALA LYS PRO GLU PHE SEQRES 15 B 305 TYR PHE ASN VAL PRO ARG LYS LEU VAL GLY LEU TRP ILE SEQRES 16 B 305 CYS ASN THR SER TYR THR TYR GLY VAL ILE THR TYR GLY SEQRES 17 B 305 ASN GLN PHE GLY SER THR GLY VAL ALA THR PRO LEU LYS SEQRES 18 B 305 GLU MET LYS GLY TYR PHE GLN VAL ASN LEU GLU CYS TYR SEQRES 19 B 305 ASP VAL ASN GLY GLY LEU ILE ARG THR TYR LYS ARG LEU SEQRES 20 B 305 LEU ALA ASP TYR ARG ASN GLY GLN GLN GLN VAL ASP PRO SEQRES 21 B 305 ILE THR THR TRP ASP TYR TRP GLU ILE ASN ALA GLU GLY SEQRES 22 B 305 VAL GLN SER VAL LYS PHE ASN PHE GLU GLY SER ASP SER SEQRES 23 B 305 GLY ALA TYR GLY LEU ASN THR PRO ALA TYR ILE CYS ILE SEQRES 24 B 305 ASP ASP ILE THR ILE GLN SEQRES 1 A 305 MET LYS ARG LYS LEU ARG PHE LEU ALA GLY ALA CYS LEU SEQRES 2 A 305 PHE THR ALA THR ALA LEU PHE SER GLY CYS SER SER ASP SEQRES 3 A 305 ASP ASP PHE LEU MET ASP PRO VAL ASP SER GLY THR SER SEQRES 4 A 305 GLN THR ARG ALA VAL THR ASN PRO ASP GLY THR LEU THR SEQRES 5 A 305 ILE THR PHE ASP ASP PHE ASP PRO GLY MET LEU ALA GLY SEQRES 6 A 305 PRO THR SER ALA GLY GLU ASN LEU TYR SER TYR GLN GLY SEQRES 7 A 305 TYR PRO GLN VAL THR THR ILE TYR ASP ASN THR PRO GLU SEQRES 8 A 305 GLU TYR LEU PHE LEU SER MET PHE ASN THR VAL GLY GLY SEQRES 9 A 305 SER THR GLU TYR SER SER GLY GLY ILE ALA LEU SER ASN SEQRES 10 A 305 TRP ASN ILE ARG SER ASN GLN SER GLY ASN THR GLY ASP SEQRES 11 A 305 TRP TRP TYR SER TYR LEU ASN GLN CYS SER VAL TYR ASN SEQRES 12 A 305 THR ALA VAL GLU ALA GLU GLY GLN ASN LYS GLU ALA GLY SEQRES 13 A 305 HIS SER GLY SER ASN PHE GLY VAL VAL TYR GLY TYR VAL SEQRES 14 A 305 ASP ALA TYR ASN GLN ALA TRP MET ALA LYS PRO GLU PHE SEQRES 15 A 305 TYR PHE ASN VAL PRO ARG LYS LEU VAL GLY LEU TRP ILE SEQRES 16 A 305 CYS ASN THR SER TYR THR TYR GLY VAL ILE THR TYR GLY SEQRES 17 A 305 ASN GLN PHE GLY SER THR GLY VAL ALA THR PRO LEU LYS SEQRES 18 A 305 GLU MET LYS GLY TYR PHE GLN VAL ASN LEU GLU CYS TYR SEQRES 19 A 305 ASP VAL ASN GLY GLY LEU ILE ARG THR TYR LYS ARG LEU SEQRES 20 A 305 LEU ALA ASP TYR ARG ASN GLY GLN GLN GLN VAL ASP PRO SEQRES 21 A 305 ILE THR THR TRP ASP TYR TRP GLU ILE ASN ALA GLU GLY SEQRES 22 A 305 VAL GLN SER VAL LYS PHE ASN PHE GLU GLY SER ASP SER SEQRES 23 A 305 GLY ALA TYR GLY LEU ASN THR PRO ALA TYR ILE CYS ILE SEQRES 24 A 305 ASP ASP ILE THR ILE GLN HET CNC B 401 178 HET CA B 402 1 HET CNC A 401 178 HET CA A 402 1 HETNAM CNC CYANOCOBALAMIN HETNAM CA CALCIUM ION FORMUL 3 CNC 2(C63 H89 CO N14 O14 P 2+) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *53(H2 O) HELIX 1 AA1 ASP B 58 LEU B 62 5 5 HELIX 2 AA2 GLY B 69 TYR B 73 5 5 HELIX 3 AA3 TYR B 107 GLY B 110 5 4 HELIX 4 AA4 ASP B 129 GLN B 137 5 9 HELIX 5 AA5 THR B 197 GLY B 207 1 11 HELIX 6 AA6 ASP A 58 LEU A 62 5 5 HELIX 7 AA7 GLY A 69 TYR A 73 5 5 HELIX 8 AA8 TYR A 107 GLY A 110 5 4 HELIX 9 AA9 ASP A 129 GLN A 137 5 9 HELIX 10 AB1 THR A 197 GLY A 207 1 11 SHEET 1 AA1 5 LEU B 50 ILE B 52 0 SHEET 2 AA1 5 TYR B 295 GLN B 304 -1 O ILE B 301 N ILE B 52 SHEET 3 AA1 5 GLU B 180 CYS B 195 -1 N GLY B 191 O THR B 302 SHEET 4 AA1 5 PHE B 161 TYR B 165 0 SHEET 5 AA1 5 GLY B 111 SER B 115 -1 N ALA B 113 O VAL B 163 SHEET 1 AA2 7 THR B 83 TYR B 85 0 SHEET 2 AA2 7 PHE B 94 MET B 97 -1 O SER B 96 N ILE B 84 SHEET 3 AA2 7 GLU B 180 CYS B 195 -1 O TYR B 182 N LEU B 95 SHEET 4 AA2 7 TYR B 295 GLN B 304 -1 O THR B 302 N GLY B 191 SHEET 5 AA2 7 ASP B 264 GLY B 282 0 SHEET 6 AA2 7 TYR B 225 TYR B 233 -1 N GLU B 231 O LYS B 277 SHEET 7 AA2 7 LEU B 239 ASP B 249 -1 O TYR B 243 N LEU B 230 SHEET 1 AA3 2 THR B 100 VAL B 101 0 SHEET 2 AA3 2 SER B 104 THR B 105 -1 O SER B 104 N VAL B 101 SHEET 1 AA4 2 ASN B 208 PHE B 210 0 SHEET 2 AA4 2 GLY B 214 ALA B 216 -1 O ALA B 216 N ASN B 208 SHEET 1 AA5 2 SER B 285 GLY B 286 0 SHEET 2 AA5 2 GLY B 289 LEU B 290 -1 O GLY B 289 N GLY B 286 SHEET 1 AA6 5 LEU A 50 ILE A 52 0 SHEET 2 AA6 5 TYR A 295 ILE A 303 -1 O ILE A 301 N ILE A 52 SHEET 3 AA6 5 GLU A 180 CYS A 195 -1 N GLY A 191 O THR A 302 SHEET 4 AA6 5 PHE A 161 TYR A 165 0 SHEET 5 AA6 5 GLY A 111 SER A 115 -1 N ALA A 113 O VAL A 163 SHEET 1 AA7 7 THR A 83 TYR A 85 0 SHEET 2 AA7 7 PHE A 94 MET A 97 -1 O SER A 96 N ILE A 84 SHEET 3 AA7 7 GLU A 180 CYS A 195 -1 O TYR A 182 N LEU A 95 SHEET 4 AA7 7 TYR A 295 ILE A 303 -1 O THR A 302 N GLY A 191 SHEET 5 AA7 7 ASP A 264 GLY A 282 0 SHEET 6 AA7 7 TYR A 225 TYR A 233 -1 N TYR A 233 O SER A 275 SHEET 7 AA7 7 LEU A 239 ASP A 249 -1 O ILE A 240 N CYS A 232 SHEET 1 AA8 2 THR A 100 VAL A 101 0 SHEET 2 AA8 2 SER A 104 THR A 105 -1 O SER A 104 N VAL A 101 SHEET 1 AA9 2 ASN A 208 PHE A 210 0 SHEET 2 AA9 2 GLY A 214 ALA A 216 -1 O ALA A 216 N ASN A 208 SHEET 1 AB1 2 SER A 285 GLY A 286 0 SHEET 2 AB1 2 GLY A 289 LEU A 290 -1 O GLY A 289 N GLY A 286 LINK O THR B 53 CA CA B 402 1555 1555 2.33 LINK OD1 ASP B 55 CA CA B 402 1555 1555 2.44 LINK OG SER B 157 CA CA B 402 1555 1555 2.02 LINK O ASN B 160 CA CA B 402 1555 1555 2.03 LINK OD1 ASP B 299 CA CA B 402 1555 1555 2.70 LINK OD2 ASP B 299 CA CA B 402 1555 1555 2.33 LINK O THR A 53 CA CA A 402 1555 1555 1.98 LINK OD2 ASP A 55 CA CA A 402 1555 1555 3.13 LINK O SER A 157 CA CA A 402 1555 1555 2.55 LINK OG SER A 157 CA CA A 402 1555 1555 2.05 LINK O ASN A 160 CA CA A 402 1555 1555 2.23 LINK OD1 ASP A 299 CA CA A 402 1555 1555 2.74 LINK OD2 ASP A 299 CA CA A 402 1555 1555 2.76 CRYST1 83.746 97.980 70.472 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014190 0.00000