HEADER CHAPERONE 29-JAN-25 9I5Y TITLE CRYSTAL STRUCTURE OF ADP-BOUND BIP ATPASE DOMAIN IN COMPLEX WITH CDNF TITLE 2 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPLASMIC RETICULUM CHAPERONE BIP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 78 KDA GLUCOSE-REGULATED PROTEIN,GRP-78,BINDING- COMPND 5 IMMUNOGLOBULIN PROTEIN,BIP,HEAT SHOCK PROTEIN 70 FAMILY PROTEIN 5, COMPND 6 HSP70 FAMILY PROTEIN 5,HEAT SHOCK PROTEIN FAMILY A MEMBER 5, COMPND 7 IMMUNOGLOBULIN HEAVY CHAIN-BINDING PROTEIN; COMPND 8 EC: 3.6.4.10; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CEREBRAL DOPAMINE NEUROTROPHIC FACTOR; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: ARMET-LIKE PROTEIN 1,CONSERVED DOPAMINE NEUROTROPHIC FACTOR; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSPA5, GRP78; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ENDOPLASMIC RETICULUM CHAPERONE, NEUROTROPHIC FACTOR, UNFOLDED KEYWDS 2 PROTEIN RESPONSE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR S.FUDO,O.SHPIRONOK,M.SAARMA,T.KAJANDER REVDAT 1 18-FEB-26 9I5Y 0 JRNL AUTH S.FUDO,O.SHPIRONOK,M.SAARMA,T.KAJANDER JRNL TITL MOLECULAR BASIS FOR CDNF FUNCTION IN BIP CHAPERONE CYCLE JRNL TITL 2 REGULATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 68152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.4900 - 4.3900 1.00 2819 152 0.1800 0.1963 REMARK 3 2 4.3800 - 3.4800 1.00 2674 157 0.1472 0.1634 REMARK 3 3 3.4800 - 3.0400 1.00 2643 146 0.1641 0.2024 REMARK 3 4 3.0400 - 2.7600 0.99 2641 126 0.1749 0.1938 REMARK 3 5 2.7600 - 2.5600 0.99 2591 134 0.1682 0.1903 REMARK 3 6 2.5600 - 2.4100 1.00 2594 153 0.1751 0.1907 REMARK 3 7 2.4100 - 2.2900 1.00 2588 146 0.1674 0.2009 REMARK 3 8 2.2900 - 2.1900 1.00 2640 120 0.1681 0.2027 REMARK 3 9 2.1900 - 2.1100 1.00 2613 122 0.1657 0.1948 REMARK 3 10 2.1100 - 2.0400 1.00 2577 145 0.1711 0.1800 REMARK 3 11 2.0400 - 1.9700 1.00 2593 133 0.1715 0.2070 REMARK 3 12 1.9700 - 1.9200 1.00 2580 150 0.1689 0.2008 REMARK 3 13 1.9200 - 1.8700 1.00 2576 138 0.1755 0.1865 REMARK 3 14 1.8700 - 1.8200 1.00 2568 142 0.1712 0.2162 REMARK 3 15 1.8200 - 1.7800 1.00 2567 136 0.1890 0.1962 REMARK 3 16 1.7800 - 1.7400 1.00 2578 133 0.2027 0.2353 REMARK 3 17 1.7400 - 1.7100 1.00 2568 155 0.2149 0.2272 REMARK 3 18 1.7100 - 1.6700 1.00 2569 147 0.2025 0.2259 REMARK 3 19 1.6700 - 1.6400 1.00 2530 152 0.1950 0.2272 REMARK 3 20 1.6400 - 1.6200 1.00 2581 130 0.1947 0.1923 REMARK 3 21 1.6200 - 1.5900 1.00 2554 131 0.2009 0.2137 REMARK 3 22 1.5900 - 1.5700 1.00 2604 119 0.2211 0.2641 REMARK 3 23 1.5700 - 1.5400 0.99 2523 139 0.2515 0.2704 REMARK 3 24 1.5400 - 1.5200 0.96 2488 141 0.2750 0.3127 REMARK 3 25 1.5200 - 1.5000 0.95 2407 139 0.3028 0.3018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3390 REMARK 3 ANGLE : 0.805 4588 REMARK 3 CHIRALITY : 0.074 519 REMARK 3 PLANARITY : 0.009 596 REMARK 3 DIHEDRAL : 8.812 473 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 26:112) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0390 -19.8867 -26.2905 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.0968 REMARK 3 T33: 0.1019 T12: -0.0004 REMARK 3 T13: -0.0145 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.9325 L22: 0.8808 REMARK 3 L33: 0.9328 L12: -0.0020 REMARK 3 L13: 0.0636 L23: -0.0959 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.0241 S13: -0.0224 REMARK 3 S21: -0.0901 S22: -0.0430 S23: 0.0959 REMARK 3 S31: 0.0674 S32: -0.0947 S33: -0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 113:131) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1192 -7.3646 -37.3243 REMARK 3 T TENSOR REMARK 3 T11: 0.2244 T22: 0.1588 REMARK 3 T33: 0.2254 T12: 0.0028 REMARK 3 T13: -0.0293 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1849 L22: 0.1756 REMARK 3 L33: 0.0398 L12: 0.1472 REMARK 3 L13: -0.0835 L23: 0.0518 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: 0.1018 S13: 0.2156 REMARK 3 S21: -0.1961 S22: -0.0900 S23: 0.0508 REMARK 3 S31: -0.1012 S32: -0.0195 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 132:212) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2399 -14.4606 -18.3905 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.1170 REMARK 3 T33: 0.1245 T12: 0.0007 REMARK 3 T13: 0.0114 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.1427 L22: 0.7403 REMARK 3 L33: 0.6647 L12: 0.1045 REMARK 3 L13: 0.2236 L23: -0.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0690 S13: 0.0649 REMARK 3 S21: 0.0258 S22: -0.0324 S23: 0.1165 REMARK 3 S31: -0.0325 S32: -0.1123 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 213:278) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3260 -17.7655 -28.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1096 REMARK 3 T33: 0.0959 T12: 0.0044 REMARK 3 T13: -0.0095 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.5081 L22: 0.4213 REMARK 3 L33: 0.4263 L12: 0.0686 REMARK 3 L13: -0.1251 L23: 0.3800 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: 0.0207 S13: -0.0196 REMARK 3 S21: -0.0206 S22: -0.0141 S23: -0.0495 REMARK 3 S31: -0.0426 S32: -0.0434 S33: -0.0008 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 279:322) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1167 -34.0373 -41.6489 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.1822 REMARK 3 T33: 0.1818 T12: 0.0082 REMARK 3 T13: -0.0182 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.4909 L22: 0.4115 REMARK 3 L33: 0.5001 L12: 0.2754 REMARK 3 L13: 0.0468 L23: 0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: 0.1411 S13: -0.1113 REMARK 3 S21: -0.0208 S22: 0.0572 S23: 0.0447 REMARK 3 S31: 0.0166 S32: -0.1867 S33: 0.0006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 323:371) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9485 -17.8588 -26.3178 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.0888 REMARK 3 T33: 0.1212 T12: -0.0135 REMARK 3 T13: 0.0074 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5316 L22: 0.1463 REMARK 3 L33: 0.2485 L12: -0.0908 REMARK 3 L13: 0.3335 L23: 0.2851 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0281 S13: 0.0296 REMARK 3 S21: -0.0629 S22: 0.0044 S23: -0.0495 REMARK 3 S31: -0.0674 S32: 0.0132 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 372:405) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8524 -21.3047 -15.3086 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.0946 REMARK 3 T33: 0.1213 T12: 0.0010 REMARK 3 T13: -0.0091 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.5232 L22: 0.0952 REMARK 3 L33: 0.3222 L12: 0.2358 REMARK 3 L13: 0.3754 L23: 0.1317 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.0830 S13: -0.1016 REMARK 3 S21: 0.0659 S22: -0.0044 S23: -0.0454 REMARK 3 S31: 0.0693 S32: 0.0050 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 112:117) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8051 4.3871 -2.2735 REMARK 3 T TENSOR REMARK 3 T11: 0.4188 T22: 0.4210 REMARK 3 T33: 0.6385 T12: -0.0746 REMARK 3 T13: 0.1046 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 0.0047 L22: 0.0046 REMARK 3 L33: 0.0113 L12: 0.0079 REMARK 3 L13: 0.0083 L23: 0.0103 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0886 S13: -0.0698 REMARK 3 S21: 0.0683 S22: -0.0526 S23: -0.2389 REMARK 3 S31: -0.0678 S32: 0.0240 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 118:123) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5119 -0.8977 3.6581 REMARK 3 T TENSOR REMARK 3 T11: 0.2984 T22: 0.3786 REMARK 3 T33: 0.3137 T12: 0.0430 REMARK 3 T13: -0.1285 T23: -0.3420 REMARK 3 L TENSOR REMARK 3 L11: 0.2089 L22: 0.0331 REMARK 3 L33: 0.1234 L12: 0.0801 REMARK 3 L13: -0.1454 L23: -0.0699 REMARK 3 S TENSOR REMARK 3 S11: -0.3057 S12: -0.1907 S13: 0.3996 REMARK 3 S21: 0.4031 S22: -0.1101 S23: -0.2472 REMARK 3 S31: -0.3458 S32: 0.3386 S33: -0.1468 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 124:129) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3259 -0.0182 8.5199 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.5876 REMARK 3 T33: 0.0473 T12: 0.1362 REMARK 3 T13: -0.0245 T23: -0.1737 REMARK 3 L TENSOR REMARK 3 L11: 0.0095 L22: 0.0037 REMARK 3 L33: 0.0067 L12: 0.0123 REMARK 3 L13: -0.0056 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.1726 S12: -0.3347 S13: 0.0186 REMARK 3 S21: 0.2658 S22: 0.0733 S23: -0.2359 REMARK 3 S31: 0.2746 S32: -0.0970 S33: 0.0639 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 130:135) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7328 -7.4370 1.7266 REMARK 3 T TENSOR REMARK 3 T11: 0.4007 T22: 0.4067 REMARK 3 T33: 0.2909 T12: 0.0051 REMARK 3 T13: 0.0624 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.0126 L22: -0.0028 REMARK 3 L33: 0.0301 L12: -0.0248 REMARK 3 L13: 0.0199 L23: 0.0108 REMARK 3 S TENSOR REMARK 3 S11: -0.0831 S12: -0.5761 S13: -0.3324 REMARK 3 S21: 0.5215 S22: 0.0192 S23: -0.1757 REMARK 3 S31: 0.5160 S32: -0.4226 S33: 0.0022 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 136:145) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1230 -1.7758 -4.3427 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.1704 REMARK 3 T33: 0.1763 T12: 0.0075 REMARK 3 T13: 0.0184 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 0.0141 L22: 0.0199 REMARK 3 L33: 0.0482 L12: -0.0289 REMARK 3 L13: -0.0472 L23: -0.0343 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.0748 S13: 0.0692 REMARK 3 S21: -0.2323 S22: 0.1244 S23: -0.0962 REMARK 3 S31: -0.1788 S32: -0.0583 S33: 0.0049 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 146:153) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9973 5.6325 3.7384 REMARK 3 T TENSOR REMARK 3 T11: 0.3645 T22: 0.3181 REMARK 3 T33: 0.2978 T12: 0.0453 REMARK 3 T13: -0.0035 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 0.0513 L22: 0.0504 REMARK 3 L33: 0.0447 L12: -0.0115 REMARK 3 L13: -0.0291 L23: -0.0196 REMARK 3 S TENSOR REMARK 3 S11: -0.3282 S12: -0.0529 S13: 0.0941 REMARK 3 S21: -0.3339 S22: -0.0306 S23: -0.1013 REMARK 3 S31: -0.3241 S32: -0.2108 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9I5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1292142964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967697 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68155 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 51.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 1.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 5.5, 100 MM NACL, REMARK 280 25% (W/V) PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.31500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.31500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 25 REMARK 465 LYS B 101 REMARK 465 TYR B 102 REMARK 465 GLU B 103 REMARK 465 LYS B 104 REMARK 465 THR B 105 REMARK 465 LEU B 106 REMARK 465 ASP B 107 REMARK 465 LEU B 108 REMARK 465 ALA B 109 REMARK 465 SER B 110 REMARK 465 VAL B 111 REMARK 465 ALA B 154 REMARK 465 THR B 155 REMARK 465 HIS B 156 REMARK 465 PRO B 157 REMARK 465 LYS B 158 REMARK 465 THR B 159 REMARK 465 GLU B 160 REMARK 465 LEU B 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LYS A 272 CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 112 CG OD1 OD2 REMARK 470 ARG B 114 NE CZ NH1 NH2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 124 16.04 59.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 181 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O1B REMARK 620 2 PO4 A 502 O3 101.6 REMARK 620 3 HOH A 604 O 170.7 87.5 REMARK 620 4 HOH A 623 O 83.9 95.2 97.4 REMARK 620 5 HOH A 715 O 95.1 86.7 83.3 178.0 REMARK 620 6 HOH A 730 O 91.3 165.2 79.4 93.4 84.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9H0C RELATED DB: PDB DBREF 9I5Y A 26 405 UNP P11021 BIP_HUMAN 26 405 DBREF 9I5Y B 101 161 UNP Q49AH0 CDNF_HUMAN 127 187 SEQADV 9I5Y SER A 25 UNP P11021 EXPRESSION TAG SEQRES 1 A 381 SER ASP VAL GLY THR VAL VAL GLY ILE ASP LEU GLY THR SEQRES 2 A 381 THR TYR SER CYS VAL GLY VAL PHE LYS ASN GLY ARG VAL SEQRES 3 A 381 GLU ILE ILE ALA ASN ASP GLN GLY ASN ARG ILE THR PRO SEQRES 4 A 381 SER TYR VAL ALA PHE THR PRO GLU GLY GLU ARG LEU ILE SEQRES 5 A 381 GLY ASP ALA ALA LYS ASN GLN LEU THR SER ASN PRO GLU SEQRES 6 A 381 ASN THR VAL PHE ASP ALA LYS ARG LEU ILE GLY ARG THR SEQRES 7 A 381 TRP ASN ASP PRO SER VAL GLN GLN ASP ILE LYS PHE LEU SEQRES 8 A 381 PRO PHE LYS VAL VAL GLU LYS LYS THR LYS PRO TYR ILE SEQRES 9 A 381 GLN VAL ASP ILE GLY GLY GLY GLN THR LYS THR PHE ALA SEQRES 10 A 381 PRO GLU GLU ILE SER ALA MET VAL LEU THR LYS MET LYS SEQRES 11 A 381 GLU THR ALA GLU ALA TYR LEU GLY LYS LYS VAL THR HIS SEQRES 12 A 381 ALA VAL VAL THR VAL PRO ALA TYR PHE ASN ASP ALA GLN SEQRES 13 A 381 ARG GLN ALA THR LYS ASP ALA GLY THR ILE ALA GLY LEU SEQRES 14 A 381 ASN VAL MET ARG ILE ILE ASN GLU PRO THR ALA ALA ALA SEQRES 15 A 381 ILE ALA TYR GLY LEU ASP LYS ARG GLU GLY GLU LYS ASN SEQRES 16 A 381 ILE LEU VAL PHE ASP LEU GLY GLY GLY THR PHE ASP VAL SEQRES 17 A 381 SER LEU LEU THR ILE ASP ASN GLY VAL PHE GLU VAL VAL SEQRES 18 A 381 ALA THR ASN GLY ASP THR HIS LEU GLY GLY GLU ASP PHE SEQRES 19 A 381 ASP GLN ARG VAL MET GLU HIS PHE ILE LYS LEU TYR LYS SEQRES 20 A 381 LYS LYS THR GLY LYS ASP VAL ARG LYS ASP ASN ARG ALA SEQRES 21 A 381 VAL GLN LYS LEU ARG ARG GLU VAL GLU LYS ALA LYS ARG SEQRES 22 A 381 ALA LEU SER SER GLN HIS GLN ALA ARG ILE GLU ILE GLU SEQRES 23 A 381 SER PHE TYR GLU GLY GLU ASP PHE SER GLU THR LEU THR SEQRES 24 A 381 ARG ALA LYS PHE GLU GLU LEU ASN MET ASP LEU PHE ARG SEQRES 25 A 381 SER THR MET LYS PRO VAL GLN LYS VAL LEU GLU ASP SER SEQRES 26 A 381 ASP LEU LYS LYS SER ASP ILE ASP GLU ILE VAL LEU VAL SEQRES 27 A 381 GLY GLY SER THR ARG ILE PRO LYS ILE GLN GLN LEU VAL SEQRES 28 A 381 LYS GLU PHE PHE ASN GLY LYS GLU PRO SER ARG GLY ILE SEQRES 29 A 381 ASN PRO ASP GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN SEQRES 30 A 381 ALA GLY VAL LEU SEQRES 1 B 61 LYS TYR GLU LYS THR LEU ASP LEU ALA SER VAL ASP LEU SEQRES 2 B 61 ARG LYS MET ARG VAL ALA GLU LEU LYS GLN ILE LEU HIS SEQRES 3 B 61 SER TRP GLY GLU GLU CYS ARG ALA CYS ALA GLU LYS THR SEQRES 4 B 61 ASP TYR VAL ASN LEU ILE GLN GLU LEU ALA PRO LYS TYR SEQRES 5 B 61 ALA ALA THR HIS PRO LYS THR GLU LEU HET ADP A 501 27 HET PO4 A 502 5 HET MG A 503 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 PO4 O4 P 3- FORMUL 5 MG MG 2+ FORMUL 6 HOH *542(H2 O) HELIX 1 AA1 GLY A 77 GLN A 83 1 7 HELIX 2 AA2 ASN A 87 THR A 91 5 5 HELIX 3 AA3 ASP A 94 LEU A 98 5 5 HELIX 4 AA4 ASP A 105 ILE A 112 1 8 HELIX 5 AA5 ALA A 141 GLY A 162 1 22 HELIX 6 AA6 ASN A 177 ALA A 191 1 15 HELIX 7 AA7 GLU A 201 TYR A 209 1 9 HELIX 8 AA8 GLY A 210 ARG A 214 5 5 HELIX 9 AA9 GLY A 254 GLY A 275 1 22 HELIX 10 AB1 ASP A 281 LEU A 299 1 19 HELIX 11 AB2 ARG A 324 THR A 338 1 15 HELIX 12 AB3 THR A 338 SER A 349 1 12 HELIX 13 AB4 LYS A 352 ILE A 356 5 5 HELIX 14 AB5 GLY A 363 ARG A 367 5 5 HELIX 15 AB6 ILE A 368 PHE A 379 1 12 HELIX 16 AB7 GLU A 392 GLY A 403 1 12 HELIX 17 AB8 VAL A 404 LEU A 405 5 2 HELIX 18 AB9 ASP B 112 MET B 116 5 5 HELIX 19 AC1 ARG B 117 TRP B 128 1 12 HELIX 20 AC2 GLU B 137 ALA B 153 1 17 SHEET 1 AA1 3 ARG A 49 ILE A 52 0 SHEET 2 AA1 3 TYR A 39 LYS A 46 -1 N LYS A 46 O ARG A 49 SHEET 3 AA1 3 THR A 62 PRO A 63 -1 O THR A 62 N SER A 40 SHEET 1 AA2 5 ARG A 49 ILE A 52 0 SHEET 2 AA2 5 TYR A 39 LYS A 46 -1 N LYS A 46 O ARG A 49 SHEET 3 AA2 5 VAL A 30 ASP A 34 -1 N ASP A 34 O CYS A 41 SHEET 4 AA2 5 HIS A 167 VAL A 172 1 O VAL A 169 N ILE A 33 SHEET 5 AA2 5 ASN A 194 ASN A 200 1 O ASN A 194 N ALA A 168 SHEET 1 AA3 2 VAL A 66 PHE A 68 0 SHEET 2 AA3 2 ARG A 74 ILE A 76 -1 O LEU A 75 N ALA A 67 SHEET 1 AA4 3 LYS A 118 LYS A 122 0 SHEET 2 AA4 3 LYS A 125 ASP A 131 -1 O LYS A 125 N LYS A 122 SHEET 3 AA4 3 THR A 137 PHE A 140 -1 O PHE A 140 N ILE A 128 SHEET 1 AA5 4 VAL A 241 ASP A 250 0 SHEET 2 AA5 4 PHE A 230 ASP A 238 -1 N LEU A 234 O ALA A 246 SHEET 3 AA5 4 LYS A 218 LEU A 225 -1 N ILE A 220 O LEU A 235 SHEET 4 AA5 4 GLU A 358 VAL A 362 1 O VAL A 362 N PHE A 223 SHEET 1 AA6 2 GLN A 304 TYR A 313 0 SHEET 2 AA6 2 GLU A 316 THR A 323 -1 O GLU A 320 N ILE A 307 SSBOND 1 CYS B 132 CYS B 135 1555 1555 2.03 LINK O1B ADP A 501 MG MG A 503 1555 1555 2.24 LINK O3 PO4 A 502 MG MG A 503 1555 1555 2.21 LINK MG MG A 503 O HOH A 604 1555 1555 2.15 LINK MG MG A 503 O HOH A 623 1555 1555 2.14 LINK MG MG A 503 O HOH A 715 1555 1555 2.13 LINK MG MG A 503 O HOH A 730 1555 1555 2.46 CRYST1 50.630 80.940 102.990 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019751 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009710 0.00000 CONECT 3136 3158 CONECT 3158 3136 CONECT 3305 3306 3307 3308 3312 CONECT 3306 3305 3337 CONECT 3307 3305 CONECT 3308 3305 CONECT 3309 3310 3311 3312 3313 CONECT 3310 3309 CONECT 3311 3309 CONECT 3312 3305 3309 CONECT 3313 3309 3314 CONECT 3314 3313 3315 CONECT 3315 3314 3316 3317 CONECT 3316 3315 3321 CONECT 3317 3315 3318 3319 CONECT 3318 3317 CONECT 3319 3317 3320 3321 CONECT 3320 3319 CONECT 3321 3316 3319 3322 CONECT 3322 3321 3323 3331 CONECT 3323 3322 3324 CONECT 3324 3323 3325 CONECT 3325 3324 3326 3331 CONECT 3326 3325 3327 3328 CONECT 3327 3326 CONECT 3328 3326 3329 CONECT 3329 3328 3330 CONECT 3330 3329 3331 CONECT 3331 3322 3325 3330 CONECT 3332 3333 3334 3335 3336 CONECT 3333 3332 CONECT 3334 3332 CONECT 3335 3332 3337 CONECT 3336 3332 CONECT 3337 3306 3335 3341 3360 CONECT 3337 3452 3467 CONECT 3341 3337 CONECT 3360 3337 CONECT 3452 3337 CONECT 3467 3337 MASTER 500 0 3 20 19 0 0 6 3840 2 40 35 END