HEADER LIGASE 29-JAN-25 9I6A
TITLE CRYSTAL STRUCTURE OF HUMAN CDC20 BOUND TO SYNTHETIC D-BOX PEPTIDE D7
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CELL DIVISION CYCLE PROTEIN 20 HOMOLOG;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: P55CDC;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: ALA-PRO-0JY-GLY;
COMPND 8 CHAIN: B;
COMPND 9 ENGINEERED: YES;
COMPND 10 OTHER_DETAILS: D-BOX PEPTIDE WITH NON-NATURAL AMINO ACID
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: CDC20;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21;
SOURCE 9 MOL_ID: 2;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 12 ORGANISM_TAXID: 9606
KEYWDS APC/C, DEGRON, D-BOX, LIGASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.EAPEN,C.OKOYE,C.STUBBS,M.SCHIMPL,T.TISCHER,E.J.FISHER,
AUTHOR 2 M.ZACHAROPOULOU,F.FERRER,D.BARFORD,D.SPRING,C.LINDON,C.PHILLIPS,
AUTHOR 3 L.S.ITZHAKI
REVDAT 1 12-FEB-25 9I6A 0
JRNL AUTH R.EAPEN,C.OKOYE,C.STUBBS,M.SCHIMPL,T.TISCHER,E.J.FISHER,
JRNL AUTH 2 M.ZACHAROPOULOU,F.FERRER,D.BARFORD,D.SPRING,C.LINDON,
JRNL AUTH 3 C.PHILLIPS,L.S.ITZHAKI
JRNL TITL DEVELOPMENT OF D-BOX PEPTIDES TO INHIBIT THE ANAPHASE
JRNL TITL 2 PROMOTING COMPLEX/CYCLOSOME
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.92 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3 (20-MAY-2020)
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.24
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 71.8
REMARK 3 NUMBER OF REFLECTIONS : 14966
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.208
REMARK 3 R VALUE (WORKING SET) : 0.207
REMARK 3 FREE R VALUE : 0.231
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170
REMARK 3 FREE R VALUE TEST SET COUNT : 774
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 39
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.57
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 394
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2068
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 372
REMARK 3 BIN R VALUE (WORKING SET) : 0.2066
REMARK 3 BIN FREE R VALUE : 0.2109
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.58
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2365
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 72
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.97
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -3.09080
REMARK 3 B22 (A**2) : 6.37390
REMARK 3 B33 (A**2) : -3.28310
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.90190
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.288
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.193
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.301
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.199
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2429 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3321 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 784 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 411 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2429 ; 10.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 309 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2161 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 1.00
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.20
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.86
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -1.4037 -15.5029 14.7136
REMARK 3 T TENSOR
REMARK 3 T11: -0.1446 T22: 0.0027
REMARK 3 T33: -0.1163 T12: -0.0294
REMARK 3 T13: 0.0058 T23: -0.0117
REMARK 3 L TENSOR
REMARK 3 L11: 1.1271 L22: 0.9059
REMARK 3 L33: 2.9423 L12: -0.2656
REMARK 3 L13: -0.1579 L23: -0.1113
REMARK 3 S TENSOR
REMARK 3 S11: -0.0706 S12: -0.0081 S13: 0.0024
REMARK 3 S21: 0.0257 S22: 0.0269 S23: -0.0325
REMARK 3 S31: 0.0009 S32: 0.0706 S33: 0.0437
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 9I6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-25.
REMARK 100 THE DEPOSITION ID IS D_1292145041.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-OCT-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14979
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.915
REMARK 200 RESOLUTION RANGE LOW (A) : 45.243
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 71.8
REMARK 200 DATA REDUNDANCY : 5.100
REMARK 200 R MERGE (I) : 0.13200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : 4.90
REMARK 200 R MERGE FOR SHELL (I) : 1.16100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): NULL
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % MPD, 12-14 % PEG 6000, 0.1 M MES
REMARK 280 PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.43450
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 GLN A 3
REMARK 465 PHE A 4
REMARK 465 ALA A 5
REMARK 465 PHE A 6
REMARK 465 GLU A 7
REMARK 465 SER A 8
REMARK 465 ASP A 9
REMARK 465 LEU A 10
REMARK 465 HIS A 11
REMARK 465 SER A 12
REMARK 465 LEU A 13
REMARK 465 LEU A 14
REMARK 465 GLN A 15
REMARK 465 LEU A 16
REMARK 465 ASP A 17
REMARK 465 ALA A 18
REMARK 465 PRO A 19
REMARK 465 ILE A 20
REMARK 465 PRO A 21
REMARK 465 ASN A 22
REMARK 465 ALA A 23
REMARK 465 PRO A 24
REMARK 465 PRO A 25
REMARK 465 ALA A 26
REMARK 465 ARG A 27
REMARK 465 TRP A 28
REMARK 465 GLN A 29
REMARK 465 ARG A 30
REMARK 465 LYS A 31
REMARK 465 ALA A 32
REMARK 465 LYS A 33
REMARK 465 GLU A 34
REMARK 465 ALA A 35
REMARK 465 ALA A 36
REMARK 465 GLY A 37
REMARK 465 PRO A 38
REMARK 465 ALA A 39
REMARK 465 PRO A 40
REMARK 465 SER A 41
REMARK 465 PRO A 42
REMARK 465 MET A 43
REMARK 465 ARG A 44
REMARK 465 ALA A 45
REMARK 465 ALA A 46
REMARK 465 ASN A 47
REMARK 465 ARG A 48
REMARK 465 SER A 49
REMARK 465 HIS A 50
REMARK 465 SER A 51
REMARK 465 ALA A 52
REMARK 465 GLY A 53
REMARK 465 ARG A 54
REMARK 465 THR A 55
REMARK 465 PRO A 56
REMARK 465 GLY A 57
REMARK 465 ARG A 58
REMARK 465 THR A 59
REMARK 465 PRO A 60
REMARK 465 GLY A 61
REMARK 465 LYS A 62
REMARK 465 SER A 63
REMARK 465 SER A 64
REMARK 465 SER A 65
REMARK 465 LYS A 66
REMARK 465 VAL A 67
REMARK 465 GLN A 68
REMARK 465 THR A 69
REMARK 465 THR A 70
REMARK 465 PRO A 71
REMARK 465 SER A 72
REMARK 465 LYS A 73
REMARK 465 PRO A 74
REMARK 465 GLY A 75
REMARK 465 GLY A 76
REMARK 465 ASP A 77
REMARK 465 ARG A 78
REMARK 465 TYR A 79
REMARK 465 ILE A 80
REMARK 465 PRO A 81
REMARK 465 HIS A 82
REMARK 465 ARG A 83
REMARK 465 SER A 84
REMARK 465 ALA A 85
REMARK 465 ALA A 86
REMARK 465 GLN A 87
REMARK 465 MET A 88
REMARK 465 GLU A 89
REMARK 465 VAL A 90
REMARK 465 ALA A 91
REMARK 465 SER A 92
REMARK 465 PHE A 93
REMARK 465 LEU A 94
REMARK 465 LEU A 95
REMARK 465 SER A 96
REMARK 465 LYS A 97
REMARK 465 GLU A 98
REMARK 465 ASN A 99
REMARK 465 GLN A 100
REMARK 465 PRO A 101
REMARK 465 GLU A 102
REMARK 465 ASN A 103
REMARK 465 SER A 104
REMARK 465 GLN A 105
REMARK 465 THR A 106
REMARK 465 PRO A 107
REMARK 465 THR A 108
REMARK 465 LYS A 109
REMARK 465 LYS A 110
REMARK 465 GLU A 111
REMARK 465 HIS A 112
REMARK 465 GLN A 113
REMARK 465 LYS A 114
REMARK 465 ALA A 115
REMARK 465 TRP A 116
REMARK 465 ALA A 117
REMARK 465 LEU A 118
REMARK 465 ASN A 119
REMARK 465 LEU A 120
REMARK 465 ASN A 121
REMARK 465 GLY A 122
REMARK 465 PHE A 123
REMARK 465 ASP A 124
REMARK 465 VAL A 125
REMARK 465 GLU A 126
REMARK 465 GLU A 127
REMARK 465 ALA A 128
REMARK 465 LYS A 129
REMARK 465 ILE A 130
REMARK 465 LEU A 131
REMARK 465 ARG A 132
REMARK 465 LEU A 133
REMARK 465 SER A 134
REMARK 465 GLY A 135
REMARK 465 LYS A 136
REMARK 465 PRO A 137
REMARK 465 GLN A 138
REMARK 465 ASN A 139
REMARK 465 ALA A 140
REMARK 465 PRO A 141
REMARK 465 GLU A 142
REMARK 465 GLY A 143
REMARK 465 TYR A 144
REMARK 465 GLN A 145
REMARK 465 ASN A 146
REMARK 465 ARG A 147
REMARK 465 LEU A 148
REMARK 465 LYS A 149
REMARK 465 VAL A 150
REMARK 465 LEU A 151
REMARK 465 TYR A 152
REMARK 465 SER A 153
REMARK 465 GLN A 154
REMARK 465 LYS A 155
REMARK 465 ALA A 156
REMARK 465 THR A 157
REMARK 465 PRO A 158
REMARK 465 GLY A 159
REMARK 465 SER A 160
REMARK 465 SER A 161
REMARK 465 ARG A 162
REMARK 465 LYS A 163
REMARK 465 THR A 164
REMARK 465 CYS A 165
REMARK 465 ARG A 166
REMARK 465 TYR A 167
REMARK 465 GLY A 341
REMARK 465 GLU A 342
REMARK 465 GLY A 343
REMARK 465 LEU A 475
REMARK 465 ASP A 476
REMARK 465 PRO A 477
REMARK 465 ALA A 478
REMARK 465 ARG A 479
REMARK 465 ARG A 480
REMARK 465 ARG A 481
REMARK 465 GLU A 482
REMARK 465 ARG A 483
REMARK 465 GLU A 484
REMARK 465 LYS A 485
REMARK 465 ALA A 486
REMARK 465 SER A 487
REMARK 465 ALA A 488
REMARK 465 ALA A 489
REMARK 465 LYS A 490
REMARK 465 SER A 491
REMARK 465 SER A 492
REMARK 465 LEU A 493
REMARK 465 ILE A 494
REMARK 465 HIS A 495
REMARK 465 GLN A 496
REMARK 465 GLY A 497
REMARK 465 ILE A 498
REMARK 465 ARG A 499
REMARK 465 ARG B 1
REMARK 465 ASP B 6
REMARK 465 ILE B 7
REMARK 465 SER B 8
REMARK 465 ASN B 9
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 236 CG CD CE NZ
REMARK 470 GLU A 237 CG CD OE1 OE2
REMARK 470 LYS A 412 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 203 -108.04 57.90
REMARK 500 SER A 266 -37.15 -173.89
REMARK 500 SER A 278 -128.55 61.97
REMARK 500 GLN A 355 48.72 -106.22
REMARK 500
REMARK 500 REMARK: NULL
DBREF 9I6A A 1 499 UNP Q12834 CDC20_HUMAN 1 499
DBREF 9I6A B 1 9 PDB 9I6A 9I6A 1 9
SEQRES 1 A 499 MET ALA GLN PHE ALA PHE GLU SER ASP LEU HIS SER LEU
SEQRES 2 A 499 LEU GLN LEU ASP ALA PRO ILE PRO ASN ALA PRO PRO ALA
SEQRES 3 A 499 ARG TRP GLN ARG LYS ALA LYS GLU ALA ALA GLY PRO ALA
SEQRES 4 A 499 PRO SER PRO MET ARG ALA ALA ASN ARG SER HIS SER ALA
SEQRES 5 A 499 GLY ARG THR PRO GLY ARG THR PRO GLY LYS SER SER SER
SEQRES 6 A 499 LYS VAL GLN THR THR PRO SER LYS PRO GLY GLY ASP ARG
SEQRES 7 A 499 TYR ILE PRO HIS ARG SER ALA ALA GLN MET GLU VAL ALA
SEQRES 8 A 499 SER PHE LEU LEU SER LYS GLU ASN GLN PRO GLU ASN SER
SEQRES 9 A 499 GLN THR PRO THR LYS LYS GLU HIS GLN LYS ALA TRP ALA
SEQRES 10 A 499 LEU ASN LEU ASN GLY PHE ASP VAL GLU GLU ALA LYS ILE
SEQRES 11 A 499 LEU ARG LEU SER GLY LYS PRO GLN ASN ALA PRO GLU GLY
SEQRES 12 A 499 TYR GLN ASN ARG LEU LYS VAL LEU TYR SER GLN LYS ALA
SEQRES 13 A 499 THR PRO GLY SER SER ARG LYS THR CYS ARG TYR ILE PRO
SEQRES 14 A 499 SER LEU PRO ASP ARG ILE LEU ASP ALA PRO GLU ILE ARG
SEQRES 15 A 499 ASN ASP TYR TYR LEU ASN LEU VAL ASP TRP SER SER GLY
SEQRES 16 A 499 ASN VAL LEU ALA VAL ALA LEU ASP ASN SER VAL TYR LEU
SEQRES 17 A 499 TRP SER ALA SER SER GLY ASP ILE LEU GLN LEU LEU GLN
SEQRES 18 A 499 MET GLU GLN PRO GLY GLU TYR ILE SER SER VAL ALA TRP
SEQRES 19 A 499 ILE LYS GLU GLY ASN TYR LEU ALA VAL GLY THR SER SER
SEQRES 20 A 499 ALA GLU VAL GLN LEU TRP ASP VAL GLN GLN GLN LYS ARG
SEQRES 21 A 499 LEU ARG ASN MET THR SER HIS SER ALA ARG VAL GLY SER
SEQRES 22 A 499 LEU SER TRP ASN SER TYR ILE LEU SER SER GLY SER ARG
SEQRES 23 A 499 SER GLY HIS ILE HIS HIS HIS ASP VAL ARG VAL ALA GLU
SEQRES 24 A 499 HIS HIS VAL ALA THR LEU SER GLY HIS SER GLN GLU VAL
SEQRES 25 A 499 CYS GLY LEU ARG TRP ALA PRO ASP GLY ARG HIS LEU ALA
SEQRES 26 A 499 SER GLY GLY ASN ASP ASN LEU VAL ASN VAL TRP PRO SER
SEQRES 27 A 499 ALA PRO GLY GLU GLY GLY TRP VAL PRO LEU GLN THR PHE
SEQRES 28 A 499 THR GLN HIS GLN GLY ALA VAL LYS ALA VAL ALA TRP CYS
SEQRES 29 A 499 PRO TRP GLN SER ASN VAL LEU ALA THR GLY GLY GLY THR
SEQRES 30 A 499 SER ASP ARG HIS ILE ARG ILE TRP ASN VAL CYS SER GLY
SEQRES 31 A 499 ALA CYS LEU SER ALA VAL ASP ALA HIS SER GLN VAL CYS
SEQRES 32 A 499 SER ILE LEU TRP SER PRO HIS TYR LYS GLU LEU ILE SER
SEQRES 33 A 499 GLY HIS GLY PHE ALA GLN ASN GLN LEU VAL ILE TRP LYS
SEQRES 34 A 499 TYR PRO THR MET ALA LYS VAL ALA GLU LEU LYS GLY HIS
SEQRES 35 A 499 THR SER ARG VAL LEU SER LEU THR MET SER PRO ASP GLY
SEQRES 36 A 499 ALA THR VAL ALA SER ALA ALA ALA ASP GLU THR LEU ARG
SEQRES 37 A 499 LEU TRP ARG CYS PHE GLU LEU ASP PRO ALA ARG ARG ARG
SEQRES 38 A 499 GLU ARG GLU LYS ALA SER ALA ALA LYS SER SER LEU ILE
SEQRES 39 A 499 HIS GLN GLY ILE ARG
SEQRES 1 B 9 ARG ALA PRO 0JY GLY ASP ILE SER ASN
HET 0JY B 4 9
HETNAM 0JY 4-METHYL-L-LEUCINE
FORMUL 2 0JY C7 H15 N O2
FORMUL 3 HOH *72(H2 O)
SHEET 1 AA1 4 ARG A 174 ASP A 177 0
SHEET 2 AA1 4 THR A 466 TRP A 470 -1 O LEU A 469 N ARG A 174
SHEET 3 AA1 4 VAL A 458 ALA A 462 -1 N VAL A 458 O TRP A 470
SHEET 4 AA1 4 VAL A 446 MET A 451 -1 N LEU A 447 O ALA A 461
SHEET 1 AA2 4 VAL A 190 TRP A 192 0
SHEET 2 AA2 4 VAL A 197 LEU A 202 -1 O ALA A 199 N ASP A 191
SHEET 3 AA2 4 SER A 205 SER A 210 -1 O TYR A 207 N VAL A 200
SHEET 4 AA2 4 ILE A 216 GLN A 221 -1 O LEU A 217 N LEU A 208
SHEET 1 AA3 4 ILE A 229 TRP A 234 0
SHEET 2 AA3 4 TYR A 240 THR A 245 -1 O ALA A 242 N ALA A 233
SHEET 3 AA3 4 GLU A 249 ASP A 254 -1 O GLN A 251 N VAL A 243
SHEET 4 AA3 4 LYS A 259 THR A 265 -1 O LYS A 259 N ASP A 254
SHEET 1 AA4 4 VAL A 271 ASN A 277 0
SHEET 2 AA4 4 ILE A 280 SER A 285 -1 O SER A 282 N SER A 275
SHEET 3 AA4 4 HIS A 289 ASP A 294 -1 O HIS A 293 N LEU A 281
SHEET 4 AA4 4 HIS A 301 SER A 306 -1 O LEU A 305 N ILE A 290
SHEET 1 AA5 4 VAL A 312 TRP A 317 0
SHEET 2 AA5 4 HIS A 323 GLY A 328 -1 O ALA A 325 N ARG A 316
SHEET 3 AA5 4 VAL A 333 PRO A 337 -1 O TRP A 336 N LEU A 324
SHEET 4 AA5 4 GLN A 349 PHE A 351 -1 O GLN A 349 N VAL A 335
SHEET 1 AA6 4 VAL A 358 TRP A 363 0
SHEET 2 AA6 4 VAL A 370 GLY A 375 -1 O ALA A 372 N ALA A 362
SHEET 3 AA6 4 HIS A 381 ASN A 386 -1 O TRP A 385 N LEU A 371
SHEET 4 AA6 4 CYS A 392 ASP A 397 -1 O VAL A 396 N ILE A 382
SHEET 1 AA7 4 VAL A 402 SER A 408 0
SHEET 2 AA7 4 GLU A 413 HIS A 418 -1 O ILE A 415 N LEU A 406
SHEET 3 AA7 4 LEU A 425 LYS A 429 -1 O TRP A 428 N LEU A 414
SHEET 4 AA7 4 ALA A 434 LEU A 439 -1 O VAL A 436 N ILE A 427
LINK C PRO B 3 N 0JY B 4 1555 1555 1.34
LINK C 0JY B 4 N GLY B 5 1555 1555 1.32
CISPEP 1 PHE A 420 ALA A 421 0 3.81
CISPEP 2 TYR A 430 PRO A 431 0 7.00
CRYST1 35.003 86.869 48.027 90.00 109.60 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.028569 0.000000 0.010173 0.00000
SCALE2 0.000000 0.011512 0.000000 0.00000
SCALE3 0.000000 0.000000 0.022102 0.00000