data_9I8C # _entry.id 9I8C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9I8C pdb_00009i8c 10.2210/pdb9i8c/pdb WWPDB D_1292145285 ? ? EMDB EMD-52713 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-02-18 ? 2 'EM metadata' 1 0 2026-02-18 ? 3 FSC 1 0 2026-02-18 ? 4 'Half map' 1 0 2026-02-18 1 5 'Half map' 1 0 2026-02-18 2 6 Image 1 0 2026-02-18 ? 7 Mask 1 0 2026-02-18 1 8 'Primary map' 1 0 2026-02-18 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9I8C _pdbx_database_status.recvd_initial_deposition_date 2025-02-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'GBSV1 portal protein without the N-terminal tail' _pdbx_database_related.db_id EMD-52713 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email fred.antson@york.ac.uk _pdbx_contact_author.name_first Fred _pdbx_contact_author.name_last Antson _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4533-3816 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chong, P.J.' 1 0000-0003-0226-8118 'Chechik, M.' 2 0000-0001-8413-4230 'Jenkins, H.' 3 0000-0002-3302-6966 'Greive, S.' 4 0000-0001-6067-2632 'Antson, F.' 5 0000-0002-4533-3816 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'GBSV1 portal protein without the N-terminal tail' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chong, P.J.' 1 0000-0003-0226-8118 primary 'Chechik, M.' 2 0000-0001-8413-4230 primary 'Jenkins, H.' 3 0000-0002-3302-6966 primary 'Greive, S.' 4 0000-0001-6067-2632 primary 'Antson, F.' 5 0000-0002-4533-3816 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Phage portal protein' _entity.formula_weight 38272.805 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKY TADGLIDELVPLTPSKVNFLDTPDGYQVLYGGQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFM SGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFG VPAFLLGIGEFNRDEYNNFINSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEV RDWLGLSPKEGLSELVIL ; _entity_poly.pdbx_seq_one_letter_code_can ;RLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKY TADGLIDELVPLTPSKVNFLDTPDGYQVLYGGQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFM SGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFG VPAFLLGIGEFNRDEYNNFINSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEV RDWLGLSPKEGLSELVIL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 LEU n 1 3 SER n 1 4 ASP n 1 5 ASN n 1 6 PRO n 1 7 GLU n 1 8 VAL n 1 9 ARG n 1 10 MET n 1 11 ALA n 1 12 VAL n 1 13 HIS n 1 14 LYS n 1 15 ILE n 1 16 ALA n 1 17 ASP n 1 18 LEU n 1 19 ILE n 1 20 SER n 1 21 SER n 1 22 MET n 1 23 THR n 1 24 ILE n 1 25 TYR n 1 26 LEU n 1 27 MET n 1 28 GLN n 1 29 ASN n 1 30 THR n 1 31 GLU n 1 32 ASP n 1 33 GLY n 1 34 ASP n 1 35 ILE n 1 36 ARG n 1 37 ILE n 1 38 ARG n 1 39 ASN n 1 40 GLU n 1 41 LEU n 1 42 SER n 1 43 ARG n 1 44 LYS n 1 45 ILE n 1 46 ASP n 1 47 ILE n 1 48 THR n 1 49 PRO n 1 50 TYR n 1 51 SER n 1 52 LEU n 1 53 MET n 1 54 THR n 1 55 ARG n 1 56 LYS n 1 57 SER n 1 58 TRP n 1 59 MET n 1 60 TYR n 1 61 ASN n 1 62 ILE n 1 63 VAL n 1 64 TYR n 1 65 THR n 1 66 MET n 1 67 LEU n 1 68 LEU n 1 69 ASP n 1 70 GLY n 1 71 GLU n 1 72 GLY n 1 73 ASN n 1 74 SER n 1 75 VAL n 1 76 VAL n 1 77 PHE n 1 78 PRO n 1 79 LYS n 1 80 TYR n 1 81 THR n 1 82 ALA n 1 83 ASP n 1 84 GLY n 1 85 LEU n 1 86 ILE n 1 87 ASP n 1 88 GLU n 1 89 LEU n 1 90 VAL n 1 91 PRO n 1 92 LEU n 1 93 THR n 1 94 PRO n 1 95 SER n 1 96 LYS n 1 97 VAL n 1 98 ASN n 1 99 PHE n 1 100 LEU n 1 101 ASP n 1 102 THR n 1 103 PRO n 1 104 ASP n 1 105 GLY n 1 106 TYR n 1 107 GLN n 1 108 VAL n 1 109 LEU n 1 110 TYR n 1 111 GLY n 1 112 GLY n 1 113 GLN n 1 114 THR n 1 115 PHE n 1 116 ASN n 1 117 TYR n 1 118 ASP n 1 119 GLU n 1 120 VAL n 1 121 LEU n 1 122 HIS n 1 123 PHE n 1 124 ILE n 1 125 TYR n 1 126 ASN n 1 127 PRO n 1 128 ASP n 1 129 PRO n 1 130 GLU n 1 131 ARG n 1 132 PRO n 1 133 TYR n 1 134 ILE n 1 135 GLY n 1 136 ARG n 1 137 GLY n 1 138 TYR n 1 139 ARG n 1 140 VAL n 1 141 VAL n 1 142 LEU n 1 143 LYS n 1 144 ASP n 1 145 ILE n 1 146 ALA n 1 147 ASP n 1 148 ASN n 1 149 LEU n 1 150 LYS n 1 151 GLN n 1 152 ALA n 1 153 THR n 1 154 ALA n 1 155 THR n 1 156 LYS n 1 157 LYS n 1 158 SER n 1 159 PHE n 1 160 MET n 1 161 SER n 1 162 GLY n 1 163 LYS n 1 164 TYR n 1 165 MET n 1 166 PRO n 1 167 SER n 1 168 LEU n 1 169 ILE n 1 170 VAL n 1 171 LYS n 1 172 VAL n 1 173 ASP n 1 174 ALA n 1 175 ALA n 1 176 THR n 1 177 ALA n 1 178 GLU n 1 179 LEU n 1 180 SER n 1 181 SER n 1 182 GLU n 1 183 GLU n 1 184 GLY n 1 185 ARG n 1 186 ASN n 1 187 ALA n 1 188 VAL n 1 189 PHE n 1 190 LYS n 1 191 LYS n 1 192 TYR n 1 193 LEU n 1 194 GLN n 1 195 ALA n 1 196 THR n 1 197 GLU n 1 198 ALA n 1 199 GLY n 1 200 GLN n 1 201 PRO n 1 202 TRP n 1 203 ILE n 1 204 ILE n 1 205 PRO n 1 206 ALA n 1 207 GLU n 1 208 LEU n 1 209 LEU n 1 210 GLU n 1 211 VAL n 1 212 GLU n 1 213 GLN n 1 214 VAL n 1 215 LYS n 1 216 PRO n 1 217 LEU n 1 218 SER n 1 219 LEU n 1 220 LYS n 1 221 ASP n 1 222 ILE n 1 223 ALA n 1 224 ILE n 1 225 ASN n 1 226 GLU n 1 227 ALA n 1 228 VAL n 1 229 GLU n 1 230 LEU n 1 231 ASP n 1 232 LYS n 1 233 ARG n 1 234 THR n 1 235 VAL n 1 236 ALA n 1 237 GLY n 1 238 MET n 1 239 PHE n 1 240 GLY n 1 241 VAL n 1 242 PRO n 1 243 ALA n 1 244 PHE n 1 245 LEU n 1 246 LEU n 1 247 GLY n 1 248 ILE n 1 249 GLY n 1 250 GLU n 1 251 PHE n 1 252 ASN n 1 253 ARG n 1 254 ASP n 1 255 GLU n 1 256 TYR n 1 257 ASN n 1 258 ASN n 1 259 PHE n 1 260 ILE n 1 261 ASN n 1 262 SER n 1 263 THR n 1 264 ILE n 1 265 LEU n 1 266 PRO n 1 267 ILE n 1 268 ALA n 1 269 LYS n 1 270 GLY n 1 271 ILE n 1 272 GLU n 1 273 GLN n 1 274 GLU n 1 275 LEU n 1 276 THR n 1 277 ARG n 1 278 LYS n 1 279 LEU n 1 280 LEU n 1 281 ILE n 1 282 SER n 1 283 PRO n 1 284 ASP n 1 285 LEU n 1 286 TYR n 1 287 PHE n 1 288 LYS n 1 289 PHE n 1 290 ASN n 1 291 PRO n 1 292 ARG n 1 293 SER n 1 294 LEU n 1 295 TYR n 1 296 ALA n 1 297 TYR n 1 298 ASP n 1 299 LEU n 1 300 LYS n 1 301 GLU n 1 302 LEU n 1 303 ALA n 1 304 GLU n 1 305 VAL n 1 306 GLY n 1 307 SER n 1 308 ASN n 1 309 MET n 1 310 TYR n 1 311 VAL n 1 312 ARG n 1 313 GLY n 1 314 ILE n 1 315 MET n 1 316 GLU n 1 317 GLY n 1 318 ASN n 1 319 GLU n 1 320 VAL n 1 321 ARG n 1 322 ASP n 1 323 TRP n 1 324 LEU n 1 325 GLY n 1 326 LEU n 1 327 SER n 1 328 PRO n 1 329 LYS n 1 330 GLU n 1 331 GLY n 1 332 LEU n 1 333 SER n 1 334 GLU n 1 335 LEU n 1 336 VAL n 1 337 ILE n 1 338 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 338 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus phage GBSV1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 365048 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 41 41 ARG ARG A . n A 1 2 LEU 2 42 42 LEU LEU A . n A 1 3 SER 3 43 43 SER SER A . n A 1 4 ASP 4 44 44 ASP ASP A . n A 1 5 ASN 5 45 45 ASN ASN A . n A 1 6 PRO 6 46 46 PRO PRO A . n A 1 7 GLU 7 47 47 GLU GLU A . n A 1 8 VAL 8 48 48 VAL VAL A . n A 1 9 ARG 9 49 49 ARG ARG A . n A 1 10 MET 10 50 50 MET MET A . n A 1 11 ALA 11 51 51 ALA ALA A . n A 1 12 VAL 12 52 52 VAL VAL A . n A 1 13 HIS 13 53 53 HIS HIS A . n A 1 14 LYS 14 54 54 LYS LYS A . n A 1 15 ILE 15 55 55 ILE ILE A . n A 1 16 ALA 16 56 56 ALA ALA A . n A 1 17 ASP 17 57 57 ASP ASP A . n A 1 18 LEU 18 58 58 LEU LEU A . n A 1 19 ILE 19 59 59 ILE ILE A . n A 1 20 SER 20 60 60 SER SER A . n A 1 21 SER 21 61 61 SER SER A . n A 1 22 MET 22 62 62 MET MET A . n A 1 23 THR 23 63 63 THR THR A . n A 1 24 ILE 24 64 64 ILE ILE A . n A 1 25 TYR 25 65 65 TYR TYR A . n A 1 26 LEU 26 66 66 LEU LEU A . n A 1 27 MET 27 67 67 MET MET A . n A 1 28 GLN 28 68 68 GLN GLN A . n A 1 29 ASN 29 69 69 ASN ASN A . n A 1 30 THR 30 70 70 THR THR A . n A 1 31 GLU 31 71 71 GLU GLU A . n A 1 32 ASP 32 72 72 ASP ASP A . n A 1 33 GLY 33 73 73 GLY GLY A . n A 1 34 ASP 34 74 74 ASP ASP A . n A 1 35 ILE 35 75 75 ILE ILE A . n A 1 36 ARG 36 76 76 ARG ARG A . n A 1 37 ILE 37 77 77 ILE ILE A . n A 1 38 ARG 38 78 78 ARG ARG A . n A 1 39 ASN 39 79 79 ASN ASN A . n A 1 40 GLU 40 80 80 GLU GLU A . n A 1 41 LEU 41 81 81 LEU LEU A . n A 1 42 SER 42 82 82 SER SER A . n A 1 43 ARG 43 83 83 ARG ARG A . n A 1 44 LYS 44 84 84 LYS LYS A . n A 1 45 ILE 45 85 85 ILE ILE A . n A 1 46 ASP 46 86 86 ASP ASP A . n A 1 47 ILE 47 87 87 ILE ILE A . n A 1 48 THR 48 88 88 THR THR A . n A 1 49 PRO 49 89 89 PRO PRO A . n A 1 50 TYR 50 90 90 TYR TYR A . n A 1 51 SER 51 91 91 SER SER A . n A 1 52 LEU 52 92 92 LEU LEU A . n A 1 53 MET 53 93 93 MET MET A . n A 1 54 THR 54 94 94 THR THR A . n A 1 55 ARG 55 95 95 ARG ARG A . n A 1 56 LYS 56 96 96 LYS LYS A . n A 1 57 SER 57 97 97 SER SER A . n A 1 58 TRP 58 98 98 TRP TRP A . n A 1 59 MET 59 99 99 MET MET A . n A 1 60 TYR 60 100 100 TYR TYR A . n A 1 61 ASN 61 101 101 ASN ASN A . n A 1 62 ILE 62 102 102 ILE ILE A . n A 1 63 VAL 63 103 103 VAL VAL A . n A 1 64 TYR 64 104 104 TYR TYR A . n A 1 65 THR 65 105 105 THR THR A . n A 1 66 MET 66 106 106 MET MET A . n A 1 67 LEU 67 107 107 LEU LEU A . n A 1 68 LEU 68 108 108 LEU LEU A . n A 1 69 ASP 69 109 109 ASP ASP A . n A 1 70 GLY 70 110 110 GLY GLY A . n A 1 71 GLU 71 111 111 GLU GLU A . n A 1 72 GLY 72 112 112 GLY GLY A . n A 1 73 ASN 73 113 113 ASN ASN A . n A 1 74 SER 74 114 114 SER SER A . n A 1 75 VAL 75 115 115 VAL VAL A . n A 1 76 VAL 76 116 116 VAL VAL A . n A 1 77 PHE 77 117 117 PHE PHE A . n A 1 78 PRO 78 118 118 PRO PRO A . n A 1 79 LYS 79 119 119 LYS LYS A . n A 1 80 TYR 80 120 120 TYR TYR A . n A 1 81 THR 81 121 121 THR THR A . n A 1 82 ALA 82 122 122 ALA ALA A . n A 1 83 ASP 83 123 123 ASP ASP A . n A 1 84 GLY 84 124 124 GLY GLY A . n A 1 85 LEU 85 125 125 LEU LEU A . n A 1 86 ILE 86 126 126 ILE ILE A . n A 1 87 ASP 87 127 127 ASP ASP A . n A 1 88 GLU 88 128 128 GLU GLU A . n A 1 89 LEU 89 129 129 LEU LEU A . n A 1 90 VAL 90 130 130 VAL VAL A . n A 1 91 PRO 91 131 131 PRO PRO A . n A 1 92 LEU 92 132 132 LEU LEU A . n A 1 93 THR 93 133 133 THR THR A . n A 1 94 PRO 94 134 134 PRO PRO A . n A 1 95 SER 95 135 135 SER SER A . n A 1 96 LYS 96 136 136 LYS LYS A . n A 1 97 VAL 97 137 137 VAL VAL A . n A 1 98 ASN 98 138 138 ASN ASN A . n A 1 99 PHE 99 139 139 PHE PHE A . n A 1 100 LEU 100 140 140 LEU LEU A . n A 1 101 ASP 101 141 141 ASP ASP A . n A 1 102 THR 102 142 142 THR THR A . n A 1 103 PRO 103 143 143 PRO PRO A . n A 1 104 ASP 104 144 144 ASP ASP A . n A 1 105 GLY 105 145 145 GLY GLY A . n A 1 106 TYR 106 146 146 TYR TYR A . n A 1 107 GLN 107 147 147 GLN GLN A . n A 1 108 VAL 108 148 148 VAL VAL A . n A 1 109 LEU 109 149 149 LEU LEU A . n A 1 110 TYR 110 150 150 TYR TYR A . n A 1 111 GLY 111 151 151 GLY GLY A . n A 1 112 GLY 112 152 152 GLY GLY A . n A 1 113 GLN 113 153 153 GLN GLN A . n A 1 114 THR 114 154 154 THR THR A . n A 1 115 PHE 115 155 155 PHE PHE A . n A 1 116 ASN 116 156 156 ASN ASN A . n A 1 117 TYR 117 157 157 TYR TYR A . n A 1 118 ASP 118 158 158 ASP ASP A . n A 1 119 GLU 119 159 159 GLU GLU A . n A 1 120 VAL 120 160 160 VAL VAL A . n A 1 121 LEU 121 161 161 LEU LEU A . n A 1 122 HIS 122 162 162 HIS HIS A . n A 1 123 PHE 123 163 163 PHE PHE A . n A 1 124 ILE 124 164 164 ILE ILE A . n A 1 125 TYR 125 165 165 TYR TYR A . n A 1 126 ASN 126 166 166 ASN ASN A . n A 1 127 PRO 127 167 167 PRO PRO A . n A 1 128 ASP 128 168 168 ASP ASP A . n A 1 129 PRO 129 169 169 PRO PRO A . n A 1 130 GLU 130 170 170 GLU GLU A . n A 1 131 ARG 131 171 171 ARG ARG A . n A 1 132 PRO 132 172 172 PRO PRO A . n A 1 133 TYR 133 173 173 TYR TYR A . n A 1 134 ILE 134 174 174 ILE ILE A . n A 1 135 GLY 135 175 175 GLY GLY A . n A 1 136 ARG 136 176 176 ARG ARG A . n A 1 137 GLY 137 177 177 GLY GLY A . n A 1 138 TYR 138 178 178 TYR TYR A . n A 1 139 ARG 139 179 179 ARG ARG A . n A 1 140 VAL 140 180 180 VAL VAL A . n A 1 141 VAL 141 181 181 VAL VAL A . n A 1 142 LEU 142 182 182 LEU LEU A . n A 1 143 LYS 143 183 183 LYS LYS A . n A 1 144 ASP 144 184 184 ASP ASP A . n A 1 145 ILE 145 185 185 ILE ILE A . n A 1 146 ALA 146 186 186 ALA ALA A . n A 1 147 ASP 147 187 187 ASP ASP A . n A 1 148 ASN 148 188 188 ASN ASN A . n A 1 149 LEU 149 189 189 LEU LEU A . n A 1 150 LYS 150 190 190 LYS LYS A . n A 1 151 GLN 151 191 191 GLN GLN A . n A 1 152 ALA 152 192 192 ALA ALA A . n A 1 153 THR 153 193 193 THR THR A . n A 1 154 ALA 154 194 194 ALA ALA A . n A 1 155 THR 155 195 195 THR THR A . n A 1 156 LYS 156 196 196 LYS LYS A . n A 1 157 LYS 157 197 197 LYS LYS A . n A 1 158 SER 158 198 198 SER SER A . n A 1 159 PHE 159 199 199 PHE PHE A . n A 1 160 MET 160 200 200 MET MET A . n A 1 161 SER 161 201 201 SER SER A . n A 1 162 GLY 162 202 202 GLY GLY A . n A 1 163 LYS 163 203 203 LYS LYS A . n A 1 164 TYR 164 204 204 TYR TYR A . n A 1 165 MET 165 205 205 MET MET A . n A 1 166 PRO 166 206 206 PRO PRO A . n A 1 167 SER 167 207 207 SER SER A . n A 1 168 LEU 168 208 208 LEU LEU A . n A 1 169 ILE 169 209 209 ILE ILE A . n A 1 170 VAL 170 210 210 VAL VAL A . n A 1 171 LYS 171 211 211 LYS LYS A . n A 1 172 VAL 172 212 212 VAL VAL A . n A 1 173 ASP 173 213 213 ASP ASP A . n A 1 174 ALA 174 214 214 ALA ALA A . n A 1 175 ALA 175 215 215 ALA ALA A . n A 1 176 THR 176 216 216 THR THR A . n A 1 177 ALA 177 217 217 ALA ALA A . n A 1 178 GLU 178 218 218 GLU GLU A . n A 1 179 LEU 179 219 219 LEU LEU A . n A 1 180 SER 180 220 220 SER SER A . n A 1 181 SER 181 221 221 SER SER A . n A 1 182 GLU 182 222 222 GLU GLU A . n A 1 183 GLU 183 223 223 GLU GLU A . n A 1 184 GLY 184 224 224 GLY GLY A . n A 1 185 ARG 185 225 225 ARG ARG A . n A 1 186 ASN 186 226 226 ASN ASN A . n A 1 187 ALA 187 227 227 ALA ALA A . n A 1 188 VAL 188 228 228 VAL VAL A . n A 1 189 PHE 189 229 229 PHE PHE A . n A 1 190 LYS 190 230 230 LYS LYS A . n A 1 191 LYS 191 231 231 LYS LYS A . n A 1 192 TYR 192 232 232 TYR TYR A . n A 1 193 LEU 193 233 233 LEU LEU A . n A 1 194 GLN 194 234 234 GLN GLN A . n A 1 195 ALA 195 235 235 ALA ALA A . n A 1 196 THR 196 236 236 THR THR A . n A 1 197 GLU 197 237 237 GLU GLU A . n A 1 198 ALA 198 238 238 ALA ALA A . n A 1 199 GLY 199 239 239 GLY GLY A . n A 1 200 GLN 200 240 240 GLN GLN A . n A 1 201 PRO 201 241 241 PRO PRO A . n A 1 202 TRP 202 242 242 TRP TRP A . n A 1 203 ILE 203 243 243 ILE ILE A . n A 1 204 ILE 204 244 244 ILE ILE A . n A 1 205 PRO 205 245 245 PRO PRO A . n A 1 206 ALA 206 246 246 ALA ALA A . n A 1 207 GLU 207 247 247 GLU GLU A . n A 1 208 LEU 208 248 248 LEU LEU A . n A 1 209 LEU 209 249 249 LEU LEU A . n A 1 210 GLU 210 250 250 GLU GLU A . n A 1 211 VAL 211 251 251 VAL VAL A . n A 1 212 GLU 212 252 252 GLU GLU A . n A 1 213 GLN 213 253 253 GLN GLN A . n A 1 214 VAL 214 254 254 VAL VAL A . n A 1 215 LYS 215 255 255 LYS LYS A . n A 1 216 PRO 216 256 256 PRO PRO A . n A 1 217 LEU 217 257 257 LEU LEU A . n A 1 218 SER 218 258 258 SER SER A . n A 1 219 LEU 219 259 259 LEU LEU A . n A 1 220 LYS 220 260 260 LYS LYS A . n A 1 221 ASP 221 261 261 ASP ASP A . n A 1 222 ILE 222 262 262 ILE ILE A . n A 1 223 ALA 223 263 263 ALA ALA A . n A 1 224 ILE 224 264 264 ILE ILE A . n A 1 225 ASN 225 265 265 ASN ASN A . n A 1 226 GLU 226 266 266 GLU GLU A . n A 1 227 ALA 227 267 267 ALA ALA A . n A 1 228 VAL 228 268 268 VAL VAL A . n A 1 229 GLU 229 269 269 GLU GLU A . n A 1 230 LEU 230 270 270 LEU LEU A . n A 1 231 ASP 231 271 271 ASP ASP A . n A 1 232 LYS 232 272 272 LYS LYS A . n A 1 233 ARG 233 273 273 ARG ARG A . n A 1 234 THR 234 274 274 THR THR A . n A 1 235 VAL 235 275 275 VAL VAL A . n A 1 236 ALA 236 276 276 ALA ALA A . n A 1 237 GLY 237 277 277 GLY GLY A . n A 1 238 MET 238 278 278 MET MET A . n A 1 239 PHE 239 279 279 PHE PHE A . n A 1 240 GLY 240 280 280 GLY GLY A . n A 1 241 VAL 241 281 281 VAL VAL A . n A 1 242 PRO 242 282 282 PRO PRO A . n A 1 243 ALA 243 283 283 ALA ALA A . n A 1 244 PHE 244 284 284 PHE PHE A . n A 1 245 LEU 245 285 285 LEU LEU A . n A 1 246 LEU 246 286 286 LEU LEU A . n A 1 247 GLY 247 287 287 GLY GLY A . n A 1 248 ILE 248 288 288 ILE ILE A . n A 1 249 GLY 249 289 289 GLY GLY A . n A 1 250 GLU 250 290 290 GLU GLU A . n A 1 251 PHE 251 291 291 PHE PHE A . n A 1 252 ASN 252 292 292 ASN ASN A . n A 1 253 ARG 253 293 293 ARG ARG A . n A 1 254 ASP 254 294 294 ASP ASP A . n A 1 255 GLU 255 295 295 GLU GLU A . n A 1 256 TYR 256 296 296 TYR TYR A . n A 1 257 ASN 257 297 297 ASN ASN A . n A 1 258 ASN 258 298 298 ASN ASN A . n A 1 259 PHE 259 299 299 PHE PHE A . n A 1 260 ILE 260 300 300 ILE ILE A . n A 1 261 ASN 261 301 301 ASN ASN A . n A 1 262 SER 262 302 302 SER SER A . n A 1 263 THR 263 303 303 THR THR A . n A 1 264 ILE 264 304 304 ILE ILE A . n A 1 265 LEU 265 305 305 LEU LEU A . n A 1 266 PRO 266 306 306 PRO PRO A . n A 1 267 ILE 267 307 307 ILE ILE A . n A 1 268 ALA 268 308 308 ALA ALA A . n A 1 269 LYS 269 309 309 LYS LYS A . n A 1 270 GLY 270 310 310 GLY GLY A . n A 1 271 ILE 271 311 311 ILE ILE A . n A 1 272 GLU 272 312 312 GLU GLU A . n A 1 273 GLN 273 313 313 GLN GLN A . n A 1 274 GLU 274 314 314 GLU GLU A . n A 1 275 LEU 275 315 315 LEU LEU A . n A 1 276 THR 276 316 316 THR THR A . n A 1 277 ARG 277 317 317 ARG ARG A . n A 1 278 LYS 278 318 318 LYS LYS A . n A 1 279 LEU 279 319 319 LEU LEU A . n A 1 280 LEU 280 320 320 LEU LEU A . n A 1 281 ILE 281 321 321 ILE ILE A . n A 1 282 SER 282 322 322 SER SER A . n A 1 283 PRO 283 323 323 PRO PRO A . n A 1 284 ASP 284 324 324 ASP ASP A . n A 1 285 LEU 285 325 325 LEU LEU A . n A 1 286 TYR 286 326 326 TYR TYR A . n A 1 287 PHE 287 327 327 PHE PHE A . n A 1 288 LYS 288 328 328 LYS LYS A . n A 1 289 PHE 289 329 329 PHE PHE A . n A 1 290 ASN 290 330 330 ASN ASN A . n A 1 291 PRO 291 331 331 PRO PRO A . n A 1 292 ARG 292 332 332 ARG ARG A . n A 1 293 SER 293 333 333 SER SER A . n A 1 294 LEU 294 334 334 LEU LEU A . n A 1 295 TYR 295 335 335 TYR TYR A . n A 1 296 ALA 296 336 336 ALA ALA A . n A 1 297 TYR 297 337 337 TYR TYR A . n A 1 298 ASP 298 338 338 ASP ASP A . n A 1 299 LEU 299 339 339 LEU LEU A . n A 1 300 LYS 300 340 340 LYS LYS A . n A 1 301 GLU 301 341 341 GLU GLU A . n A 1 302 LEU 302 342 342 LEU LEU A . n A 1 303 ALA 303 343 343 ALA ALA A . n A 1 304 GLU 304 344 344 GLU GLU A . n A 1 305 VAL 305 345 345 VAL VAL A . n A 1 306 GLY 306 346 346 GLY GLY A . n A 1 307 SER 307 347 347 SER SER A . n A 1 308 ASN 308 348 348 ASN ASN A . n A 1 309 MET 309 349 349 MET MET A . n A 1 310 TYR 310 350 350 TYR TYR A . n A 1 311 VAL 311 351 351 VAL VAL A . n A 1 312 ARG 312 352 352 ARG ARG A . n A 1 313 GLY 313 353 353 GLY GLY A . n A 1 314 ILE 314 354 354 ILE ILE A . n A 1 315 MET 315 355 355 MET MET A . n A 1 316 GLU 316 356 356 GLU GLU A . n A 1 317 GLY 317 357 357 GLY GLY A . n A 1 318 ASN 318 358 358 ASN ASN A . n A 1 319 GLU 319 359 359 GLU GLU A . n A 1 320 VAL 320 360 360 VAL VAL A . n A 1 321 ARG 321 361 361 ARG ARG A . n A 1 322 ASP 322 362 362 ASP ASP A . n A 1 323 TRP 323 363 363 TRP TRP A . n A 1 324 LEU 324 364 364 LEU LEU A . n A 1 325 GLY 325 365 365 GLY GLY A . n A 1 326 LEU 326 366 366 LEU LEU A . n A 1 327 SER 327 367 367 SER SER A . n A 1 328 PRO 328 368 368 PRO PRO A . n A 1 329 LYS 329 369 369 LYS LYS A . n A 1 330 GLU 330 370 370 GLU GLU A . n A 1 331 GLY 331 371 371 GLY GLY A . n A 1 332 LEU 332 372 372 LEU LEU A . n A 1 333 SER 333 373 373 SER SER A . n A 1 334 GLU 334 374 374 GLU GLU A . n A 1 335 LEU 335 375 375 LEU LEU A . n A 1 336 VAL 336 376 376 VAL VAL A . n A 1 337 ILE 337 377 377 ILE ILE A . n A 1 338 LEU 338 378 378 LEU LEU A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9I8C _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9I8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9I8C _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9I8C _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 8247 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.621 ? 11178 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.959 ? 1116 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.041 ? 1254 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 1440 ? f_plane_restr ? ? # _struct.entry_id 9I8C _struct.title 'GBSV1 portal protein without the N-terminal tail' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9I8C _struct_keywords.text 'GBSV1, Portal protein, Geobacillus phage GSBV1, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0H263_9CAUD _struct_ref.pdbx_db_accession Q0H263 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKY TADGLIDELVPLTPSKVNFLDTPDGYQVLYGGQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFM SGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFG VPAFLLGIGEFNRDEYNNFINSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEV RDWLGLSPKEGLSELVIL ; _struct_ref.pdbx_align_begin 41 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9I8C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 338 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q0H263 _struct_ref_seq.db_align_beg 41 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 378 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 41 _struct_ref_seq.pdbx_auth_seq_align_end 378 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.866025 0.500000 0.000000 -47.06208 -0.500000 0.866025 -0.000000 81.51392 -0.000000 0.000000 1.000000 -0.00001 3 'point symmetry operation' ? ? 0.866025 -0.500000 0.000000 81.51398 0.500000 0.866025 -0.000000 -47.06206 0.000000 0.000000 1.000000 -0.00006 4 'point symmetry operation' ? ? 0.500000 -0.866025 0.000000 175.63808 0.866025 0.500000 0.000000 -47.06208 -0.000000 0.000000 1.000000 -0.00001 5 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 257.15199 1.000000 0.000000 0.000000 -0.00001 -0.000000 0.000000 1.000000 -0.00000 6 'point symmetry operation' ? ? -0.500000 -0.866025 0.000000 304.21406 0.866025 -0.500000 0.000000 81.51398 0.000000 0.000000 1.000000 -0.00005 7 'point symmetry operation' ? ? -0.866025 -0.500000 -0.000000 304.21408 0.500000 -0.866025 0.000000 175.63808 -0.000000 0.000000 1.000000 -0.00001 8 'point symmetry operation' ? ? -1.000000 -0.000000 -0.000000 257.15204 0.000000 -1.000000 -0.000000 257.15199 -0.000000 -0.000000 1.000000 0.00001 9 'point symmetry operation' ? ? -0.866025 0.500000 -0.000000 175.63803 -0.500000 -0.866025 0.000000 304.21406 0.000000 0.000000 1.000000 -0.00005 10 'point symmetry operation' ? ? -0.500000 0.866025 -0.000000 81.51392 -0.866025 -0.500000 -0.000000 304.21408 -0.000000 0.000000 1.000000 -0.00001 11 'point symmetry operation' ? ? -0.000000 1.000000 0.000000 0.00000 -1.000000 -0.000000 -0.000000 257.15204 -0.000000 -0.000000 1.000000 0.00001 12 'point symmetry operation' ? ? 0.500000 0.866025 -0.000000 -47.06206 -0.866025 0.500000 -0.000000 175.63804 0.000000 0.000000 1.000000 -0.00006 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 1 ? ASP A 4 ? ARG A 41 ASP A 44 5 ? 4 HELX_P HELX_P2 AA2 ASN A 5 ? MET A 22 ? ASN A 45 MET A 62 1 ? 18 HELX_P HELX_P3 AA3 ASN A 39 ? ILE A 47 ? ASN A 79 ILE A 87 1 ? 9 HELX_P HELX_P4 AA4 THR A 54 ? LEU A 68 ? THR A 94 LEU A 108 1 ? 15 HELX_P HELX_P5 AA5 THR A 93 ? SER A 95 ? THR A 133 SER A 135 5 ? 3 HELX_P HELX_P6 AA6 ASP A 118 ? VAL A 120 ? ASP A 158 VAL A 160 5 ? 3 HELX_P HELX_P7 AA7 LEU A 142 ? SER A 161 ? LEU A 182 SER A 201 1 ? 20 HELX_P HELX_P8 AA8 SER A 181 ? LEU A 193 ? SER A 221 LEU A 233 1 ? 13 HELX_P HELX_P9 AA9 SER A 218 ? ALA A 223 ? SER A 258 ALA A 263 1 ? 6 HELX_P HELX_P10 AB1 ILE A 224 ? GLY A 240 ? ILE A 264 GLY A 280 1 ? 17 HELX_P HELX_P11 AB2 PRO A 242 ? GLY A 247 ? PRO A 282 GLY A 287 5 ? 6 HELX_P HELX_P12 AB3 ASN A 252 ? THR A 263 ? ASN A 292 THR A 303 1 ? 12 HELX_P HELX_P13 AB4 THR A 263 ? LEU A 280 ? THR A 303 LEU A 320 1 ? 18 HELX_P HELX_P14 AB5 PRO A 291 ? TYR A 295 ? PRO A 331 TYR A 335 5 ? 5 HELX_P HELX_P15 AB6 ASP A 298 ? ARG A 312 ? ASP A 338 ARG A 352 1 ? 15 HELX_P HELX_P16 AB7 GLU A 316 ? LEU A 324 ? GLU A 356 LEU A 364 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 2 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 34 ? ARG A 36 ? ASP A 74 ARG A 76 AA1 2 ILE A 24 ? ASN A 29 ? ILE A 64 ASN A 69 AA1 3 LEU A 285 ? PHE A 289 ? LEU A 325 PHE A 329 AA2 1 ILE A 86 ? PRO A 91 ? ILE A 126 PRO A 131 AA2 2 ASN A 73 ? TYR A 80 ? ASN A 113 TYR A 120 AA2 3 LEU A 121 ? ILE A 124 ? LEU A 161 ILE A 164 AA3 1 VAL A 97 ? ASP A 101 ? VAL A 137 ASP A 141 AA3 2 TYR A 106 ? TYR A 110 ? TYR A 146 TYR A 150 AA3 3 GLN A 113 ? ASN A 116 ? GLN A 153 ASN A 156 AA4 1 PRO A 127 ? ASP A 128 ? PRO A 167 ASP A 168 AA4 2 ARG A 131 ? GLY A 135 ? ARG A 171 GLY A 175 AA5 1 LEU A 168 ? VAL A 172 ? LEU A 208 VAL A 212 AA5 2 LEU A 209 ? GLN A 213 ? LEU A 249 GLN A 253 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 35 ? O ILE A 75 N GLN A 28 ? N GLN A 68 AA1 2 3 N TYR A 25 ? N TYR A 65 O LYS A 288 ? O LYS A 328 AA2 1 2 O GLU A 88 ? O GLU A 128 N LYS A 79 ? N LYS A 119 AA2 2 3 N VAL A 76 ? N VAL A 116 O LEU A 121 ? O LEU A 161 AA3 1 2 N ASN A 98 ? N ASN A 138 O LEU A 109 ? O LEU A 149 AA3 2 3 N VAL A 108 ? N VAL A 148 O PHE A 115 ? O PHE A 155 AA4 1 2 N ASP A 128 ? N ASP A 168 O ILE A 134 ? O ILE A 174 AA5 1 2 N ILE A 169 ? N ILE A 209 O GLU A 212 ? O GLU A 252 # _pdbx_entry_details.entry_id 9I8C _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 78 ? ? -100.30 73.21 2 1 ASN A 166 ? ? 52.63 73.81 3 1 LEU A 248 ? ? -80.30 -70.33 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9I8C _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 9I8C _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 21727 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'GBSV1 portal protein' _em_entity_assembly.details ;The N-terminal tail (M1-V40) was removed during cloning. The C-terminal end (E379-D406) could not be modelled, so has been omitted from the coordinate file. ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9I8C _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 240000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9I8C _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'Blot time 1s, force -10, wait time 5s' # _em_experiment.entry_id 9I8C _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9I8C _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_admin.current_status REL _em_admin.deposition_date 2025-02-04 _em_admin.deposition_site PDBE _em_admin.entry_id 9I8C _em_admin.last_update 2026-02-18 _em_admin.map_release_date 2026-02-18 _em_admin.title 'GBSV1 portal protein without the N-terminal tail' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 50 mM Tris-HCL 1 Tris 1 0.25 M NaCl 2 'Sodium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 365048 _em_entity_assembly_naturalsource.organism 'Geobacillus phage GBSV1' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 4.81 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 973630 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION 4 'IMAGE ACQUISITION' ? 2 1 ? 1 EPU ? MASKING ? 3 1 1 1 ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4 'LAYERLINE INDEXING' ? 5 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 6 1 1 1 ? ? 'MODEL FITTING' ? 7 1 1 ? Coot 0.9.8.5 OTHER ? 8 1 1 1 ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.21.1_5286 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 4 CLASSIFICATION ? 12 1 ? ? RELION 4 RECONSTRUCTION ? 13 1 ? ? RELION 4 # _em_specimen.concentration 1.3 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' ? 1 'Other private' France ? 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? # _atom_sites.entry_id 9I8C _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #