HEADER HYDROLASE 13-FEB-25 9IBQ TITLE STRUCTURE OF BSTEII WITH DNA SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BSTEII; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*CP*TP*AP*CP*AP*TP*TP*GP*GP*TP*TP*AP*CP*CP*T)- COMPND 7 3'); COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*AP*TP*GP*TP*AP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: BSTEIIR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562 KEYWDS RESTRICTION ENDONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RETY,X.G.XI REVDAT 1 04-MAR-26 9IBQ 0 JRNL AUTH S.RETY,X.G.XI JRNL TITL STRUCTURE OF BSTEII WITH DNA SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.2 REMARK 3 NUMBER OF REFLECTIONS : 41922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9400 - 3.5400 0.94 4061 197 0.1525 0.1699 REMARK 3 2 3.5400 - 2.8100 0.97 3991 235 0.1749 0.2401 REMARK 3 3 2.8100 - 2.4500 0.86 3510 207 0.1964 0.2236 REMARK 3 4 2.4500 - 2.2300 0.86 3515 172 0.1885 0.2237 REMARK 3 5 2.2300 - 2.0900 1.00 3564 196 0.2005 0.2288 REMARK 3 6 2.0600 - 1.9500 0.97 3710 190 0.2062 0.2150 REMARK 3 7 1.9500 - 1.8500 0.76 3104 138 0.2188 0.2435 REMARK 3 8 1.8500 - 1.7700 0.80 3235 185 0.2235 0.2501 REMARK 3 9 1.7700 - 1.7000 0.72 2868 155 0.2147 0.2472 REMARK 3 10 1.7000 - 1.6400 0.62 2558 95 0.2208 0.2253 REMARK 3 11 1.6400 - 1.5900 0.53 2122 110 0.2296 0.2572 REMARK 3 12 1.5900 - 1.5400 0.43 1726 80 0.2430 0.3449 REMARK 3 13 1.5400 - 1.5000 0.28 1135 57 0.2650 0.2695 REMARK 3 14 1.5000 - 1.4700 0.13 537 28 0.2615 0.2733 REMARK 3 15 1.4700 - 1.4300 0.06 223 18 0.3280 0.2887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.148 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.948 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2890 REMARK 3 ANGLE : 1.389 3988 REMARK 3 CHIRALITY : 0.091 428 REMARK 3 PLANARITY : 0.012 441 REMARK 3 DIHEDRAL : 18.259 1148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5078 44.7338 -13.3849 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.1668 REMARK 3 T33: 0.2609 T12: 0.0433 REMARK 3 T13: -0.0721 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.4841 L22: 1.4697 REMARK 3 L33: 4.7683 L12: -0.2174 REMARK 3 L13: 2.2148 L23: 0.1951 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: -0.0824 S13: 0.1466 REMARK 3 S21: -0.3858 S22: -0.0062 S23: 0.3361 REMARK 3 S31: -0.3649 S32: -0.6561 S33: -0.0340 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7508 24.8382 10.1744 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.2117 REMARK 3 T33: 0.1411 T12: -0.0137 REMARK 3 T13: 0.0116 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 3.3480 L22: 5.0765 REMARK 3 L33: 1.6377 L12: -3.6294 REMARK 3 L13: 1.7708 L23: -1.4851 REMARK 3 S TENSOR REMARK 3 S11: -0.1054 S12: -0.4030 S13: -0.1817 REMARK 3 S21: 0.3630 S22: -0.0723 S23: 0.1777 REMARK 3 S31: 0.1563 S32: 0.0310 S33: 0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5382 24.8841 2.2679 REMARK 3 T TENSOR REMARK 3 T11: 0.0882 T22: 0.0911 REMARK 3 T33: 0.1251 T12: -0.0021 REMARK 3 T13: -0.0161 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 2.9161 L22: 1.6501 REMARK 3 L33: 1.6604 L12: -0.4293 REMARK 3 L13: 0.1153 L23: 0.2730 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0958 S13: -0.2004 REMARK 3 S21: 0.0698 S22: -0.0214 S23: -0.1091 REMARK 3 S31: 0.0998 S32: 0.0340 S33: -0.0125 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6978 28.5883 -17.6250 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1689 REMARK 3 T33: 0.1569 T12: -0.0406 REMARK 3 T13: 0.0023 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 7.2831 L22: 5.6647 REMARK 3 L33: 7.1011 L12: 0.4512 REMARK 3 L13: 4.0075 L23: 0.7103 REMARK 3 S TENSOR REMARK 3 S11: 0.1263 S12: -0.4468 S13: -0.2473 REMARK 3 S21: 0.2062 S22: -0.1970 S23: 0.3958 REMARK 3 S31: 0.4521 S32: -0.6356 S33: 0.0188 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5987 23.0542 -26.9001 REMARK 3 T TENSOR REMARK 3 T11: 0.3465 T22: 0.2160 REMARK 3 T33: 0.2490 T12: -0.0327 REMARK 3 T13: -0.0645 T23: -0.0677 REMARK 3 L TENSOR REMARK 3 L11: 5.9702 L22: 2.8037 REMARK 3 L33: 4.1659 L12: 0.4284 REMARK 3 L13: 1.2069 L23: 0.7031 REMARK 3 S TENSOR REMARK 3 S11: 0.1275 S12: 0.4468 S13: -1.1284 REMARK 3 S21: -0.2566 S22: -0.0420 S23: 0.1047 REMARK 3 S31: 0.4899 S32: 0.2047 S33: -0.0801 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3926 26.4288 -31.7808 REMARK 3 T TENSOR REMARK 3 T11: 0.3107 T22: 0.2094 REMARK 3 T33: 0.1674 T12: -0.0187 REMARK 3 T13: -0.0377 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 2.4260 L22: 2.7700 REMARK 3 L33: 4.8454 L12: -0.5354 REMARK 3 L13: -0.4694 L23: 1.3157 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: 0.4918 S13: -0.3738 REMARK 3 S21: -0.6899 S22: 0.1256 S23: -0.0859 REMARK 3 S31: 0.0913 S32: 0.1607 S33: -0.1477 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2219 39.3643 -28.4832 REMARK 3 T TENSOR REMARK 3 T11: 0.6095 T22: 0.3543 REMARK 3 T33: 0.2730 T12: -0.0238 REMARK 3 T13: 0.1066 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 0.7468 L22: 2.2398 REMARK 3 L33: 6.7308 L12: 1.3040 REMARK 3 L13: 2.3021 L23: 3.8478 REMARK 3 S TENSOR REMARK 3 S11: -0.3792 S12: 0.4551 S13: -0.2856 REMARK 3 S21: -1.1284 S22: 0.2883 S23: -0.4530 REMARK 3 S31: -0.1871 S32: 0.7421 S33: -0.1402 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2453 40.6771 -28.8415 REMARK 3 T TENSOR REMARK 3 T11: 0.5939 T22: 0.2055 REMARK 3 T33: 0.1397 T12: -0.0688 REMARK 3 T13: 0.0428 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.7083 L22: 0.4238 REMARK 3 L33: 2.1749 L12: -0.5509 REMARK 3 L13: 0.1052 L23: 0.2050 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: 0.4421 S13: -0.1737 REMARK 3 S21: -1.0937 S22: 0.0940 S23: -0.2992 REMARK 3 S31: -0.2553 S32: -0.1661 S33: -0.0472 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5717 37.4697 -29.2943 REMARK 3 T TENSOR REMARK 3 T11: 0.5049 T22: 0.3267 REMARK 3 T33: 0.3538 T12: 0.0239 REMARK 3 T13: -0.2174 T23: -0.0829 REMARK 3 L TENSOR REMARK 3 L11: 4.6605 L22: 1.2323 REMARK 3 L33: 0.3243 L12: 0.5863 REMARK 3 L13: 0.1047 L23: -0.5541 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: 0.5926 S13: -0.2992 REMARK 3 S21: -1.1049 S22: -0.0623 S23: 0.7413 REMARK 3 S31: -0.2752 S32: -0.5155 S33: 0.0158 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5022 26.0918 -11.4545 REMARK 3 T TENSOR REMARK 3 T11: 0.1830 T22: 0.1080 REMARK 3 T33: 0.1795 T12: 0.0140 REMARK 3 T13: -0.0234 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.4980 L22: 4.3812 REMARK 3 L33: 1.5916 L12: -1.1751 REMARK 3 L13: 0.2810 L23: 0.8224 REMARK 3 S TENSOR REMARK 3 S11: 0.1835 S12: 0.0635 S13: -0.3481 REMARK 3 S21: -0.0885 S22: -0.1076 S23: 0.0728 REMARK 3 S31: 0.3527 S32: -0.0036 S33: 0.0053 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1673 10.5832 -15.9393 REMARK 3 T TENSOR REMARK 3 T11: 0.6590 T22: 0.2659 REMARK 3 T33: 0.6713 T12: 0.1772 REMARK 3 T13: -0.0703 T23: -0.1010 REMARK 3 L TENSOR REMARK 3 L11: 8.8545 L22: 8.6629 REMARK 3 L33: 1.4904 L12: -8.0169 REMARK 3 L13: -0.8180 L23: 0.9510 REMARK 3 S TENSOR REMARK 3 S11: 0.6358 S12: 0.9706 S13: -1.0379 REMARK 3 S21: -0.6762 S22: -0.8235 S23: 0.2793 REMARK 3 S31: 1.5062 S32: 0.0766 S33: 0.2149 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9IBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1292145493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 49.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 1.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 20%, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.36900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.36900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 128 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 595 O HOH A 625 1.87 REMARK 500 O HOH A 401 O HOH A 537 1.93 REMARK 500 O HOH A 470 O HOH A 591 1.94 REMARK 500 OG SER A 50 O HOH A 401 1.98 REMARK 500 NZ LYS A 41 O HOH A 402 2.00 REMARK 500 O6 DG C 18 O HOH C 101 2.05 REMARK 500 OE2 GLU A 212 O HOH A 403 2.08 REMARK 500 O HOH A 608 O HOH A 613 2.11 REMARK 500 OD2 ASP A 29 O HOH A 404 2.11 REMARK 500 O HOH A 455 O HOH A 496 2.12 REMARK 500 O HOH A 456 O HOH A 623 2.14 REMARK 500 O HOH A 591 O HOH A 629 2.15 REMARK 500 NH2 ARG A 134 O HOH A 405 2.16 REMARK 500 O HOH A 588 O HOH A 592 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 558 O HOH A 614 2565 1.50 REMARK 500 O HOH A 600 O HOH A 630 4455 1.69 REMARK 500 O HOH A 606 O HOH A 614 2565 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 1 P DC D 1 OP3 -0.117 REMARK 500 DT D 10 P DT D 10 O5' -0.070 REMARK 500 DA D 12 C5 DA D 12 N7 -0.047 REMARK 500 DA C 16 P DA C 16 OP3 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 4 O5' - P - OP2 ANGL. DEV. = -6.3 DEGREES REMARK 500 DC D 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 10 OP1 - P - OP2 ANGL. DEV. = 9.1 DEGREES REMARK 500 DT D 10 O5' - P - OP2 ANGL. DEV. = -11.9 DEGREES REMARK 500 DC D 13 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 79 76.82 -150.47 REMARK 500 THR A 216 -3.42 74.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 642 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 ASP A 184 OD1 94.8 REMARK 620 3 HOH A 440 O 99.7 165.5 REMARK 620 4 HOH A 528 O 89.8 100.3 79.1 REMARK 620 5 HOH A 544 O 175.6 84.5 81.0 86.0 REMARK 620 6 DG D 9 OP1 88.0 85.6 95.6 173.9 96.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD1 REMARK 620 2 ASP A 184 OD2 44.7 REMARK 620 3 HOH A 428 O 103.3 58.6 REMARK 620 4 HOH A 472 O 86.8 68.1 65.3 REMARK 620 5 HOH A 495 O 61.0 75.4 102.1 142.7 REMARK 620 6 HOH A 616 O 154.8 110.2 51.7 79.6 121.6 REMARK 620 7 DG D 9 OP1 69.7 104.8 142.8 77.6 105.2 126.6 REMARK 620 N 1 2 3 4 5 6 DBREF 9IBQ A 1 288 UNP E5Q8U2 E5Q8U2_GEOSE 1 288 DBREF 9IBQ D 1 15 PDB 9IBQ 9IBQ 1 15 DBREF 9IBQ C 16 21 PDB 9IBQ 9IBQ 16 21 SEQRES 1 A 288 MET ILE LYS ASN PHE ARG ASP TYR GLN ARG VAL ALA ALA SEQRES 2 A 288 LYS TYR ILE THR PHE ILE GLU SER GLU PHE TYR PRO ASP SEQRES 3 A 288 TYR LEU ASP ASN ALA ARG PHE LEU TYR GLY GLU VAL LEU SEQRES 4 A 288 ASN LYS PHE TYR GLU LEU VAL ASN SER SER SER SER SER SEQRES 5 A 288 ILE GLU LEU LEU GLU ASN ILE SER LYS THR LYS ASP PRO SEQRES 6 A 288 VAL ARG THR GLN LEU LEU ARG ILE PHE ARG LYS TYR VAL SEQRES 7 A 288 SER PRO ASP THR SER VAL GLU MET LEU LYS ARG LYS GLN SEQRES 8 A 288 ARG ILE PRO ASP ILE ILE LYS GLU PHE GLY THR ARG PHE SEQRES 9 A 288 ARG ASP ILE LYS ILE VAL ARG GLN LYS ILE ALA THR ARG SEQRES 10 A 288 ASN HIS PRO ASP GLU THR ILE MET ALA LEU LEU TYR GLU SEQRES 11 A 288 TYR LYS ASP ARG GLY LYS LYS GLY TYR GLU LEU THR ASP SEQRES 12 A 288 ALA PHE PHE THR TRP PHE GLU GLN LYS PHE PRO ASN TYR SEQRES 13 A 288 GLU ILE ILE GLY PRO ARG GLY ALA GLY LYS ASP ILE LEU SEQRES 14 A 288 LEU ASN GLU VAL LEU PRO GLY PHE PRO SER LYS ILE PRO SEQRES 15 A 288 ALA ASP PHE LEU ILE TYR ARG ARG SER ASP LYS THR PRO SEQRES 16 A 288 ILE VAL VAL GLY PHE ALA ARG TYR ASP SER ASP ARG GLY SEQRES 17 A 288 GLY ALA GLN GLU ASP ASP ARG THR GLY GLY ASN ARG ASP SEQRES 18 A 288 LYS ILE THR GLU ILE LYS LYS TYR ALA ALA GLU HIS ASN SEQRES 19 A 288 ILE PRO LEU LYS ILE LEU PHE LEU ASN ASP GLY PRO GLY SEQRES 20 A 288 LEU LEU LEU GLY SER MET TRP ASN ASP TYR SER ALA LEU SEQRES 21 A 288 GLU ASP TYR GLY GLU GLY CYS VAL MET VAL CYS THR LEU SEQRES 22 A 288 LYS MET LEU GLU GLU ARG PHE THR ILE ASP TRP LEU GLU SEQRES 23 A 288 ASN LEU SEQRES 1 D 15 DC DT DA DC DA DT DT DG DG DT DT DA DC SEQRES 2 D 15 DC DT SEQRES 1 C 6 DA DT DG DT DA DG HET CA A 301 1 HET CA A 302 1 HETNAM CA CALCIUM ION FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *282(H2 O) HELIX 1 AA1 ASN A 4 ILE A 16 5 13 HELIX 2 AA2 TYR A 27 SER A 49 1 23 HELIX 3 AA3 SER A 51 LYS A 61 1 11 HELIX 4 AA4 PRO A 65 SER A 79 1 15 HELIX 5 AA5 SER A 83 LYS A 88 1 6 HELIX 6 AA6 ARG A 89 GLN A 91 5 3 HELIX 7 AA7 ARG A 92 GLY A 101 1 10 HELIX 8 AA8 THR A 102 PHE A 104 5 3 HELIX 9 AA9 ASP A 106 ALA A 115 1 10 HELIX 10 AB1 ASP A 121 GLU A 130 1 10 HELIX 11 AB2 GLY A 135 PHE A 153 1 19 HELIX 12 AB3 LEU A 170 LEU A 174 1 5 HELIX 13 AB4 GLY A 209 ASP A 213 5 5 HELIX 14 AB5 ASP A 214 ASN A 219 1 6 HELIX 15 AB6 ASN A 219 HIS A 233 1 15 HELIX 16 AB7 GLY A 245 LEU A 250 5 6 HELIX 17 AB8 SER A 252 GLU A 265 1 14 HELIX 18 AB9 THR A 272 LYS A 274 5 3 HELIX 19 AC1 MET A 275 PHE A 280 1 6 HELIX 20 AC2 THR A 281 ASN A 287 1 7 SHEET 1 AA1 5 TYR A 156 ILE A 159 0 SHEET 2 AA1 5 PHE A 185 ARG A 189 -1 O TYR A 188 N GLU A 157 SHEET 3 AA1 5 THR A 194 TYR A 203 -1 O ILE A 196 N ILE A 187 SHEET 4 AA1 5 LYS A 238 ASP A 244 1 O LEU A 240 N VAL A 198 SHEET 5 AA1 5 VAL A 268 CYS A 271 1 O MET A 269 N PHE A 241 SHEET 1 AA2 2 ILE A 168 LEU A 169 0 SHEET 2 AA2 2 PRO A 182 ALA A 183 -1 O ALA A 183 N ILE A 168 LINK OD1 ASP A 167 CA CA A 301 1555 1555 2.33 LINK OD1 ASP A 184 CA CA A 301 1555 1555 2.30 LINK OD1 ASP A 184 CA CA A 302 1555 1555 2.70 LINK OD2 ASP A 184 CA CA A 302 1555 1555 2.99 LINK CA CA A 301 O HOH A 440 1555 1555 2.48 LINK CA CA A 301 O HOH A 528 1555 1555 2.42 LINK CA CA A 301 O HOH A 544 1555 1555 2.16 LINK CA CA A 301 OP1 DG D 9 1555 1555 2.28 LINK CA CA A 302 O HOH A 428 1555 1555 2.49 LINK CA CA A 302 O HOH A 472 1555 1555 2.10 LINK CA CA A 302 O HOH A 495 1555 1555 2.84 LINK CA CA A 302 O HOH A 616 1555 1555 2.63 LINK CA CA A 302 OP1 DG D 9 1555 1555 2.75 CISPEP 1 TYR A 24 PRO A 25 0 1.31 CISPEP 2 ASP A 64 PRO A 65 0 4.63 CISPEP 3 HIS A 119 PRO A 120 0 -2.77 CISPEP 4 ASP A 213 ASP A 214 0 -10.42 CRYST1 69.719 74.738 66.450 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015049 0.00000 CONECT 1393 2792 CONECT 1521 2792 2793 CONECT 1522 2793 CONECT 2523 2792 2793 CONECT 2792 1393 1521 2523 2833 CONECT 2792 2921 2937 CONECT 2793 1521 1522 2523 2821 CONECT 2793 2865 2888 3009 CONECT 2821 2793 CONECT 2833 2792 CONECT 2865 2793 CONECT 2888 2793 CONECT 2921 2792 CONECT 2937 2792 CONECT 3009 2793 MASTER 531 0 2 20 7 0 0 6 3072 3 15 26 END